Wall clock time and date at job start Mon Mar 30 2020 18:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46860 * 235.03512 * 3 2 1 5 5 C 1.53002 * 109.46965 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47300 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00109 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.85127 * 336.19946 * 9 8 6 11 11 C 1.53786 * 113.61017 * 107.50857 * 9 8 6 12 12 C 1.53780 * 87.08292 * 89.11397 * 11 9 8 13 13 H 1.08992 * 113.69153 * 270.87353 * 12 11 9 14 14 N 1.46496 * 113.61445 * 139.97574 * 12 11 9 15 15 C 1.36937 * 119.99686 * 107.49952 * 14 12 11 16 16 H 1.07997 * 120.00523 * 0.02562 * 15 14 12 17 17 C 1.38819 * 120.00029 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99850 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47245 * 60.00264 * 19 17 15 21 21 H 1.48497 * 109.46825 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46823 * 299.99981 * 19 17 15 23 23 C 1.53780 * 113.61267 * 205.00064 * 9 8 6 24 24 H 4.44639 * 5.63339 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46939 * 115.03964 * 3 2 1 26 26 H 1.09004 * 109.47156 * 355.04297 * 3 2 1 27 27 H 1.09000 * 109.47058 * 60.00954 * 4 3 2 28 28 H 1.08987 * 109.47609 * 300.00137 * 4 3 2 29 29 H 1.09004 * 109.46930 * 60.00393 * 5 4 3 30 30 H 1.09000 * 109.47312 * 300.00337 * 5 4 3 31 31 H 0.96995 * 120.00018 * 0.27749 * 8 6 5 32 32 H 1.09002 * 113.60822 * 203.66522 * 11 9 8 33 33 H 1.08998 * 113.61367 * 334.56303 * 11 9 8 34 34 H 0.97000 * 120.00527 * 287.50806 * 14 12 11 35 35 H 0.96998 * 119.99988 * 179.97438 * 18 17 15 36 36 H 1.09001 * 113.61558 * 25.44031 * 23 9 8 37 37 H 1.09003 * 113.61114 * 156.25465 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8275 1.1821 5 6 4.6856 0.8288 1.1818 6 6 5.1876 1.6427 2.3465 7 8 4.3992 2.1695 3.1027 8 7 6.5126 1.7843 2.5484 9 6 7.0006 2.5761 3.6804 10 1 6.2749 3.3122 4.0261 11 6 7.6058 1.7268 4.8106 12 6 8.9512 1.8497 4.0760 13 1 9.1227 1.0627 3.3418 14 7 10.0928 2.0507 4.9718 15 6 10.9865 1.0344 5.1806 16 1 10.8501 0.0849 4.6845 17 6 12.0685 1.2250 6.0290 18 7 12.2351 2.3824 6.6333 19 14 13.2881 -0.1612 6.3132 20 1 13.9093 -0.5466 5.0206 21 1 14.3433 0.2931 7.2541 22 1 12.5808 -1.3320 6.8911 23 6 8.4096 3.1535 3.4663 24 1 -1.0501 0.0000 -0.0003 25 1 3.0092 0.4358 -0.9311 26 1 3.0098 -1.0230 0.0888 27 1 2.7926 0.3924 2.1132 28 1 2.7918 1.8511 1.0933 29 1 5.0484 1.2642 0.2506 30 1 5.0498 -0.1948 1.2704 31 1 7.1431 1.3657 1.9417 32 1 7.5923 2.2202 5.7825 33 1 7.2193 0.7083 4.8464 34 1 10.2155 2.9036 5.4173 35 1 12.9910 2.5154 7.2265 36 1 8.6721 3.2868 2.4168 37 1 8.6154 4.0377 4.0696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713946201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:48 Heat of formation + Delta-G solvation = 31.987593 kcal Electronic energy + Delta-G solvation = -17189.819572 eV Core-core repulsion = 14355.070738 eV Total energy + Delta-G solvation = -2834.748834 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00524 -38.09879 -35.77609 -34.02684 -32.78294 -32.24986 -29.93302 -28.11201 -25.12778 -24.61353 -23.01500 -21.94874 -20.42805 -18.93867 -18.47528 -17.20719 -16.88444 -16.13127 -15.74613 -15.01075 -14.58437 -14.53515 -13.98961 -13.75030 -13.60195 -12.87180 -12.82449 -12.60746 -12.02800 -11.86158 -11.81432 -11.60369 -11.21680 -10.90240 -10.79224 -10.47635 -10.34756 -10.31903 -10.26091 -9.93379 -9.75260 -9.56489 -8.91761 -8.77000 -6.99803 -5.81201 -3.10362 2.54735 2.59675 2.68859 3.25484 3.41155 3.45732 3.46828 4.10950 4.56239 4.61113 4.75364 4.84015 5.03098 5.18533 5.22099 5.25388 5.34742 5.37455 5.44267 5.49409 5.77905 5.85874 5.88005 5.92441 6.05290 6.15360 6.24656 6.31902 6.51794 6.62854 6.69745 7.07971 7.37595 7.61898 7.65198 8.31405 8.37175 9.48240 10.05780 10.40082 11.41022 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.046808 B = 0.003146 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.050320 B = 8898.298273 C = 9245.435293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.184 4.184 3 C -0.015 4.015 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.511 3.489 7 O -0.545 6.545 8 N -0.708 5.708 9 C 0.114 3.886 10 H 0.094 0.906 11 C -0.176 4.176 12 C 0.167 3.833 13 H 0.073 0.927 14 N -0.712 5.712 15 C -0.246 4.246 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.159 4.159 24 H 0.216 0.784 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.400 0.600 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.063 0.937 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 -3.142 -14.195 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.051 4.051 4 C -0.137 4.137 5 C -0.182 4.182 6 C 0.298 3.702 7 O -0.422 6.422 8 N -0.359 5.359 9 C 0.009 3.991 10 H 0.113 0.887 11 C -0.218 4.218 12 C 0.055 3.945 13 H 0.091 0.909 14 N -0.350 5.350 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.199 4.199 24 H 0.233 0.767 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.235 0.765 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.861 -2.908 -13.614 21.865 hybrid contribution 0.882 -0.687 0.116 1.124 sum -15.979 -3.595 -13.498 21.224 Atomic orbital electron populations 1.24912 0.96015 1.01201 1.00999 1.23132 0.94613 1.00290 1.00353 1.18788 0.84831 1.01695 0.99796 1.21270 0.93083 1.01261 0.98098 1.21685 0.97301 1.01420 0.97773 1.20629 0.82327 0.80948 0.86302 1.90700 1.55291 1.48600 1.47635 1.45753 1.06790 1.53203 1.30107 1.21821 0.95465 0.94426 0.87421 0.88745 1.24299 0.99935 0.99355 0.98225 1.21612 0.86642 0.94186 0.92078 0.90864 1.42398 1.25735 1.15125 1.51771 1.19243 1.02741 0.93365 1.22372 0.91179 1.24780 0.99041 0.97110 0.99944 1.69649 1.31697 1.22856 1.33761 0.86255 0.80901 0.81378 0.77566 1.21225 1.21657 1.21225 1.23858 0.94114 1.00685 1.01274 0.76734 0.89460 0.89408 0.90691 0.90761 0.88675 0.88573 0.76531 0.89652 0.92471 0.78006 0.93359 0.91797 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.18 -1.74 13.34 -37.12 -0.50 -2.23 16 3 C -0.01 -0.11 5.70 -29.52 -0.17 -0.27 16 4 C -0.10 -0.89 4.46 -26.73 -0.12 -1.01 16 5 C -0.14 -1.14 5.70 -27.88 -0.16 -1.30 16 6 C 0.51 6.49 7.83 -10.99 -0.09 6.40 16 7 O -0.54 -9.25 15.58 5.55 0.09 -9.16 16 8 N -0.71 -8.70 5.26 -53.01 -0.28 -8.98 16 9 C 0.11 1.72 4.32 -67.11 -0.29 1.43 16 10 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 11 C -0.18 -3.09 7.68 -25.92 -0.20 -3.29 16 12 C 0.17 3.16 4.36 -67.12 -0.29 2.87 16 13 H 0.07 1.34 8.10 -51.93 -0.42 0.91 16 14 N -0.71 -17.51 5.40 -52.64 -0.28 -17.79 16 15 C -0.25 -6.72 9.97 -15.06 -0.15 -6.87 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 19 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.16 -2.49 7.58 -25.92 -0.20 -2.69 16 24 H 0.22 1.14 7.80 -54.09 -0.42 0.72 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 28 H 0.07 0.77 8.10 -51.94 -0.42 0.35 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 3.91 8.70 -40.82 -0.36 3.56 16 32 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.39 10.09 7.92 -40.82 -0.32 9.77 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -33.07 323.31 -7.26 -40.33 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.68 Total: 9.53 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.68 Total: -8.72 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.16 Total: -53.93 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.07 -7.26 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713946201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.320 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds