Wall clock time and date at job start Mon Mar 30 2020 18:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46860 * 235.03512 * 3 2 1 5 5 C 1.53002 * 109.46965 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47300 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00109 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 H 1.08993 * 112.85127 * 336.19946 * 9 8 6 11 11 C 1.53786 * 113.61017 * 107.50857 * 9 8 6 12 12 C 1.53780 * 87.08292 * 89.11397 * 11 9 8 13 13 H 1.08992 * 113.69153 * 270.87353 * 12 11 9 14 14 N 1.46496 * 113.61445 * 139.97574 * 12 11 9 15 15 C 1.36937 * 119.99686 * 107.49952 * 14 12 11 16 16 H 1.07997 * 120.00523 * 0.02562 * 15 14 12 17 17 C 1.38819 * 120.00029 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99850 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47245 * 60.00264 * 19 17 15 21 21 H 1.48497 * 109.46825 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46823 * 299.99981 * 19 17 15 23 23 C 1.53780 * 113.61267 * 205.00064 * 9 8 6 24 24 H 4.44639 * 5.63339 * 179.97438 * 4 1 2 25 25 H 1.09004 * 109.46939 * 115.03964 * 3 2 1 26 26 H 1.09004 * 109.47156 * 355.04297 * 3 2 1 27 27 H 1.09000 * 109.47058 * 60.00954 * 4 3 2 28 28 H 1.08987 * 109.47609 * 300.00137 * 4 3 2 29 29 H 1.09004 * 109.46930 * 60.00393 * 5 4 3 30 30 H 1.09000 * 109.47312 * 300.00337 * 5 4 3 31 31 H 0.96995 * 120.00018 * 0.27749 * 8 6 5 32 32 H 1.09002 * 113.60822 * 203.66522 * 11 9 8 33 33 H 1.08998 * 113.61367 * 334.56303 * 11 9 8 34 34 H 0.97000 * 120.00527 * 287.50806 * 14 12 11 35 35 H 0.96998 * 119.99988 * 179.97438 * 18 17 15 36 36 H 1.09001 * 113.61558 * 25.44031 * 23 9 8 37 37 H 1.09003 * 113.61114 * 156.25465 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8275 1.1821 5 6 4.6856 0.8288 1.1818 6 6 5.1876 1.6427 2.3465 7 8 4.3992 2.1695 3.1027 8 7 6.5126 1.7843 2.5484 9 6 7.0006 2.5761 3.6804 10 1 6.2749 3.3122 4.0261 11 6 7.6058 1.7268 4.8106 12 6 8.9512 1.8497 4.0760 13 1 9.1227 1.0627 3.3418 14 7 10.0928 2.0507 4.9718 15 6 10.9865 1.0344 5.1806 16 1 10.8501 0.0849 4.6845 17 6 12.0685 1.2250 6.0290 18 7 12.2351 2.3824 6.6333 19 14 13.2881 -0.1612 6.3132 20 1 13.9093 -0.5466 5.0206 21 1 14.3433 0.2931 7.2541 22 1 12.5808 -1.3320 6.8911 23 6 8.4096 3.1535 3.4663 24 1 -1.0501 0.0000 -0.0003 25 1 3.0092 0.4358 -0.9311 26 1 3.0098 -1.0230 0.0888 27 1 2.7926 0.3924 2.1132 28 1 2.7918 1.8511 1.0933 29 1 5.0484 1.2642 0.2506 30 1 5.0498 -0.1948 1.2704 31 1 7.1431 1.3657 1.9417 32 1 7.5923 2.2202 5.7825 33 1 7.2193 0.7083 4.8464 34 1 10.2155 2.9036 5.4173 35 1 12.9910 2.5154 7.2265 36 1 8.6721 3.2868 2.4168 37 1 8.6154 4.0377 4.0696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713946201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:48 Heat of formation + Delta-G solvation = 9.764089 kcal Electronic energy + Delta-G solvation = -17190.783255 eV Core-core repulsion = 14355.070738 eV Total energy + Delta-G solvation = -2835.712517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.15743 -39.39206 -36.47439 -35.73165 -34.10751 -33.11021 -31.76545 -28.85445 -26.55775 -26.34674 -24.24643 -23.19497 -21.37080 -20.34539 -19.22016 -19.02766 -17.92570 -17.06802 -16.81663 -16.64079 -15.84075 -15.60956 -15.33561 -15.16956 -14.57579 -14.25716 -13.73415 -13.65376 -13.35554 -13.31048 -13.20759 -12.76335 -12.60578 -12.42528 -12.20593 -11.89834 -11.83017 -11.72301 -11.20119 -11.13839 -10.94443 -10.82892 -10.81862 -9.97457 -8.98353 -7.93929 -5.22602 1.48602 1.51412 1.57404 1.70004 1.86580 1.94754 2.27736 2.57507 3.37408 3.55120 3.72089 3.80498 3.86993 3.97454 4.13109 4.20792 4.33861 4.34647 4.53486 4.71653 4.72526 4.79678 4.84850 4.91746 4.95981 5.14513 5.21898 5.23513 5.24292 5.28887 5.37972 5.51729 5.74742 6.27874 6.65351 6.74344 7.33878 7.34744 8.10969 8.33058 9.29167 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.046808 B = 0.003146 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.050320 B = 8898.298273 C = 9245.435293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.507 3.493 7 O -0.594 6.594 8 N -0.699 5.699 9 C 0.132 3.868 10 H 0.084 0.916 11 C -0.174 4.174 12 C 0.155 3.845 13 H 0.087 0.913 14 N -0.728 5.728 15 C -0.244 4.244 16 H 0.080 0.920 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.973 3.027 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.280 1.280 23 C -0.143 4.143 24 H 0.239 0.761 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.417 0.583 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.373 0.627 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.749 -4.565 -16.533 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.133 4.133 5 C -0.169 4.169 6 C 0.296 3.704 7 O -0.474 6.474 8 N -0.350 5.350 9 C 0.026 3.974 10 H 0.102 0.898 11 C -0.216 4.216 12 C 0.045 3.955 13 H 0.104 0.896 14 N -0.366 5.366 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.271 4.271 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.206 1.206 23 C -0.182 4.182 24 H 0.255 0.745 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.142 0.858 31 H 0.254 0.746 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.205 0.795 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.168 -4.370 -16.020 23.885 hybrid contribution 0.839 -0.243 0.816 1.196 sum -16.329 -4.613 -15.204 22.784 Atomic orbital electron populations 1.25709 0.97125 1.00730 1.00447 1.23877 0.95907 1.00859 1.00953 1.18861 0.83677 1.02463 0.99677 1.21173 0.93946 1.00265 0.97912 1.21722 0.96211 1.02182 0.96813 1.21515 0.81744 0.80359 0.86819 1.90690 1.56427 1.50655 1.49654 1.45659 1.07301 1.52734 1.29351 1.21463 0.94889 0.93704 0.87393 0.89767 1.24154 0.99579 0.99617 0.98262 1.21962 0.85131 0.96551 0.91886 0.89555 1.42613 1.26978 1.14092 1.52876 1.19684 1.02624 0.94120 1.21167 0.90240 1.25604 1.01362 0.99447 1.00664 1.69813 1.32329 1.24923 1.35065 0.85212 0.78427 0.78603 0.77523 1.20017 1.22494 1.20598 1.23663 0.93644 0.98626 1.02293 0.74487 0.87337 0.87636 0.93131 0.92731 0.85258 0.85814 0.74611 0.91621 0.92603 0.79474 0.94084 0.89305 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.63 19.25 74.32 1.43 -2.20 16 2 C -0.22 -3.81 13.34 31.13 0.42 -3.40 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.04 16 4 C -0.09 -1.56 4.46 30.59 0.14 -1.43 16 5 C -0.13 -1.66 5.70 29.85 0.17 -1.49 16 6 C 0.51 11.86 7.83 87.66 0.69 12.55 16 7 O -0.59 -19.97 15.58 -3.04 -0.05 -20.01 16 8 N -0.70 -15.38 5.26 -440.03 -2.32 -17.70 16 9 C 0.13 3.80 4.32 45.52 0.20 4.00 16 10 H 0.08 2.67 7.46 -2.39 -0.02 2.65 16 11 C -0.17 -6.04 7.68 31.12 0.24 -5.80 16 12 C 0.15 5.66 4.36 45.52 0.20 5.86 16 13 H 0.09 2.94 8.10 -2.39 -0.02 2.92 16 14 N -0.73 -35.77 5.40 -320.46 -1.73 -37.50 16 15 C -0.24 -13.22 9.97 84.04 0.84 -12.39 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 18 N -0.97 -59.13 13.06 21.65 0.28 -58.85 16 19 Si 0.97 45.43 29.55 68.60 2.03 47.45 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 C -0.14 -4.22 7.58 31.12 0.24 -3.99 16 24 H 0.24 2.20 7.80 -4.41 -0.03 2.16 16 25 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 28 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 29 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.42 6.57 8.70 -92.71 -0.81 5.76 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.37 19.90 7.92 -92.71 -0.73 19.16 16 35 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 Total: -1.00 -72.97 323.31 2.91 -70.05 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.48 Total: 28.81 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 5.18 Total: -12.26 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -3.76 Total: -114.05 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.01 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -72.97 2.91 -70.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713946201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.819 kcal (2) G-P(sol) polarization free energy of solvation -72.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds