Wall clock time and date at job start Mon Mar 30 2020 18:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47114 * 353.82700 * 3 2 1 5 5 C 1.52999 * 109.46713 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.47033 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46933 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00389 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99914 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00335 * 180.02562 * 9 7 6 11 11 C 1.53493 * 114.20968 * 155.00388 * 10 9 7 12 12 N 1.47058 * 87.98843 * 87.51984 * 11 10 9 13 13 C 1.36939 * 136.05576 * 206.86742 * 12 11 10 14 14 H 1.07999 * 120.00262 * 6.89608 * 13 12 11 15 15 C 1.38820 * 119.99870 * 186.90334 * 13 12 11 16 16 N 1.31623 * 119.99962 * 7.45800 * 15 13 12 17 17 Si 1.86800 * 119.99890 * 187.46108 * 15 13 12 18 18 H 1.48508 * 109.46943 * 94.79809 * 17 15 13 19 19 H 1.48498 * 109.46995 * 214.79830 * 17 15 13 20 20 H 1.48493 * 109.47191 * 334.80093 * 17 15 13 21 21 C 1.47065 * 87.88764 * 27.11926 * 12 11 10 22 22 H 4.44642 * 5.63344 * 179.97438 * 4 1 2 23 23 H 1.08993 * 109.46898 * 233.82213 * 3 2 1 24 24 H 1.09005 * 109.46654 * 113.82251 * 3 2 1 25 25 H 1.09001 * 109.47306 * 60.00544 * 4 3 2 26 26 H 1.08991 * 109.47057 * 299.99486 * 4 3 2 27 27 H 1.08997 * 109.47436 * 59.99849 * 5 4 3 28 28 H 1.09000 * 109.47571 * 299.99926 * 5 4 3 29 29 H 1.08997 * 109.47078 * 59.99697 * 6 5 4 30 30 H 1.09005 * 109.46888 * 299.99639 * 6 5 4 31 31 H 0.97005 * 119.99687 * 0.02562 * 9 7 6 32 32 H 1.09005 * 113.28462 * 21.93385 * 10 9 7 33 33 H 1.09000 * 113.46649 * 332.73137 * 11 10 9 34 34 H 1.09005 * 113.52085 * 202.30922 * 11 10 9 35 35 H 0.96998 * 119.99720 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.46183 * 87.65927 * 21 12 11 37 37 H 1.08992 * 113.47023 * 218.10216 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.4332 0.1551 5 6 4.6866 -1.4325 0.1545 6 6 5.1974 -2.8664 0.3102 7 6 6.7044 -2.8657 0.3089 8 8 7.3103 -1.8213 0.1952 9 7 7.3789 -4.0257 0.4353 10 6 8.8438 -4.0251 0.4346 11 6 9.4741 -5.2220 1.1600 12 7 9.3946 -5.9652 -0.1064 13 6 9.2968 -7.2810 -0.4730 14 1 9.1497 -8.0417 0.2794 15 6 9.3869 -7.6371 -1.8117 16 7 9.7118 -6.7340 -2.7125 17 14 9.0471 -9.3979 -2.3348 18 1 7.6293 -9.5234 -2.7586 19 1 9.9363 -9.7579 -3.4682 20 1 9.3052 -10.3119 -1.1933 21 6 9.4729 -4.6741 -0.8061 22 1 -1.0497 -0.0004 0.0002 23 1 3.0090 0.6074 0.8295 24 1 3.0091 0.4159 -0.9402 25 1 2.7937 -2.0400 -0.6745 26 1 2.7936 -1.8485 1.0952 27 1 5.0501 -0.8257 0.9837 28 1 5.0495 -1.0174 -0.7858 29 1 4.8339 -3.4736 -0.5188 30 1 4.8347 -3.2811 1.2508 31 1 6.8942 -4.8610 0.5266 32 1 9.2744 -3.0610 0.7054 33 1 8.8420 -5.6350 1.9462 34 1 10.4959 -5.0399 1.4931 35 1 9.7743 -6.9827 -3.6480 36 1 10.4944 -4.3452 -0.9972 37 1 8.8398 -4.6212 -1.6917 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714932480.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:52 Heat of formation + Delta-G solvation = 33.000274 kcal Electronic energy + Delta-G solvation = -17396.418059 eV Core-core repulsion = 14561.713138 eV Total energy + Delta-G solvation = -2834.704921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.03886 -39.37399 -36.96031 -34.90968 -34.09915 -33.64178 -30.83444 -29.47422 -26.42018 -26.33605 -24.81592 -22.42967 -21.29372 -20.94602 -18.87281 -18.74397 -17.95597 -17.00530 -16.93500 -16.73427 -15.80524 -15.61772 -15.31662 -15.03452 -14.62430 -14.42478 -14.13014 -13.74204 -13.36478 -13.22524 -12.79926 -12.63658 -12.53366 -12.41590 -12.13168 -12.10148 -11.77915 -11.55444 -11.28092 -11.11247 -10.96097 -10.94134 -10.72121 -9.85664 -8.97037 -7.93082 -5.26423 1.46743 1.48227 1.57465 1.73290 1.91095 1.95855 2.32785 2.46887 3.29991 3.44151 3.52826 3.82048 3.87212 4.04588 4.09787 4.44439 4.47958 4.51941 4.56796 4.68576 4.79169 4.81252 4.86575 4.94205 4.96126 5.13547 5.15804 5.20044 5.24546 5.38299 5.45807 5.49114 5.75140 5.87932 6.71598 6.75028 6.87584 7.36587 7.58423 8.58466 9.25567 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026850 B = 0.003755 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.592533 B = 7455.609854 C = 8117.603630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C -0.018 4.018 4 C -0.104 4.104 5 C -0.098 4.098 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.589 6.589 9 N -0.693 5.693 10 C 0.109 3.891 11 C 0.115 3.885 12 N -0.633 5.633 13 C -0.227 4.227 14 H 0.092 0.908 15 C -0.068 4.068 16 N -0.955 5.955 17 Si 0.981 3.019 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.264 1.264 21 C 0.145 3.855 22 H 0.242 0.758 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.410 0.590 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.247 0.753 36 H 0.021 0.979 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 9.336 8.397 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.172 4.172 7 C 0.297 3.703 8 O -0.470 6.470 9 N -0.342 5.342 10 C 0.002 3.998 11 C -0.011 4.011 12 N -0.360 5.360 13 C -0.355 4.355 14 H 0.109 0.891 15 C -0.261 4.261 16 N -0.604 5.604 17 Si 0.809 3.191 18 H -0.212 1.212 19 H -0.227 1.227 20 H -0.189 1.189 21 C 0.018 3.982 22 H 0.258 0.742 23 H 0.113 0.887 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.246 0.754 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.534 9.770 8.133 19.309 hybrid contribution 0.163 -1.282 -0.867 1.557 sum -14.371 8.488 7.266 18.203 Atomic orbital electron populations 1.25683 0.96948 1.00033 1.00693 1.23739 0.95561 1.01256 1.00998 1.18821 0.84058 0.98521 1.04001 1.21458 0.94001 0.95573 1.03156 1.21268 0.94747 0.94749 1.02820 1.21710 0.88610 1.00548 1.06314 1.21451 0.91802 0.82618 0.74437 1.90642 1.71755 1.32839 1.51733 1.45544 1.05868 1.09983 1.72827 1.22223 0.81542 0.98436 0.97623 1.22879 0.98627 0.89209 0.90388 1.46133 1.85159 1.01326 1.03379 1.19388 1.41368 0.82583 0.92168 0.89058 1.25717 1.02272 1.01895 0.96265 1.70068 1.54705 1.34771 1.00855 0.85020 0.77149 0.79316 0.77574 1.21180 1.22705 1.18855 1.22395 0.96252 0.84560 0.95015 0.74189 0.88706 0.89247 0.91445 0.90627 0.91398 0.92451 0.87753 0.86180 0.75387 0.87744 0.91480 0.92480 0.94402 0.96082 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.47 19.25 74.32 1.43 -2.04 16 2 C -0.22 -3.99 13.34 31.13 0.42 -3.57 16 3 C -0.02 -0.28 5.70 28.79 0.16 -0.11 16 4 C -0.10 -1.63 5.17 30.59 0.16 -1.47 16 5 C -0.10 -1.92 4.50 30.60 0.14 -1.78 16 6 C -0.13 -2.72 5.70 29.85 0.17 -2.55 16 7 C 0.51 15.67 7.83 87.66 0.69 16.36 16 8 O -0.59 -22.44 15.57 -3.02 -0.05 -22.49 16 9 N -0.69 -22.63 5.39 -441.95 -2.38 -25.01 16 10 C 0.11 4.10 4.61 45.47 0.21 4.31 16 11 C 0.11 4.35 8.45 83.18 0.70 5.06 16 12 N -0.63 -31.45 3.76 -738.58 -2.78 -34.23 16 13 C -0.23 -12.30 10.73 84.04 0.90 -11.40 16 14 H 0.09 4.64 7.84 -2.91 -0.02 4.62 16 15 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 16 N -0.96 -58.18 11.86 21.65 0.26 -57.93 16 17 Si 0.98 44.87 29.56 68.60 2.03 46.89 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 C 0.15 7.04 7.02 83.18 0.58 7.62 16 22 H 0.24 2.05 7.80 -4.43 -0.03 2.01 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 28 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.12 1.81 8.14 -2.38 -0.02 1.80 16 31 H 0.41 12.42 8.76 -92.70 -0.81 11.61 16 32 H 0.10 3.81 7.45 -2.38 -0.02 3.80 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.03 1.41 7.63 -2.39 -0.02 1.39 16 Total: -1.00 -71.12 322.54 3.33 -67.78 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.23 Total: 17.93 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.03 Total: 7.05 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -4.90 Total: -117.16 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.12 3.33 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714932480.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.782 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds