Wall clock time and date at job start Mon Mar 30 2020 18:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47042 * 157.37131 * 3 2 1 5 5 C 1.53000 * 109.47281 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47155 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99902 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00207 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00008 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46948 * 174.94227 * 9 8 6 11 11 N 1.46505 * 115.55024 * 80.38544 * 10 9 8 12 12 C 1.36942 * 119.99583 * 65.27855 * 11 10 9 13 13 H 1.08007 * 119.99964 * 354.96284 * 12 11 10 14 14 C 1.38809 * 119.99798 * 174.68484 * 12 11 10 15 15 N 1.31619 * 120.00146 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99839 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47378 * 89.99754 * 16 14 12 18 18 H 1.48498 * 109.47141 * 210.00161 * 16 14 12 19 19 H 1.48500 * 109.47218 * 329.99749 * 16 14 12 20 20 C 1.52999 * 117.50098 * 226.06177 * 10 9 8 21 21 C 1.53002 * 117.49982 * 294.71995 * 10 9 8 22 22 H 4.44647 * 5.63369 * 180.02562 * 4 1 2 23 23 H 1.08993 * 109.47159 * 37.36787 * 3 2 1 24 24 H 1.09001 * 109.47049 * 277.36244 * 3 2 1 25 25 H 1.09001 * 109.47333 * 59.99195 * 4 3 2 26 26 H 1.08998 * 109.47006 * 299.99992 * 4 3 2 27 27 H 1.09002 * 109.47024 * 59.99870 * 5 4 3 28 28 H 1.09002 * 109.46875 * 299.99793 * 5 4 3 29 29 H 0.97001 * 119.99786 * 359.97438 * 8 6 5 30 30 H 1.08994 * 109.47255 * 54.94194 * 9 8 6 31 31 H 1.08999 * 109.46673 * 294.93754 * 9 8 6 32 32 H 0.96998 * 120.00497 * 245.27841 * 11 10 9 33 33 H 0.97000 * 119.99696 * 180.02562 * 15 14 12 34 34 H 1.08998 * 117.49974 * 215.00780 * 20 10 9 35 35 H 1.09000 * 117.49520 * 0.02562 * 20 10 9 36 36 H 1.09000 * 117.49687 * 359.97438 * 21 10 9 37 37 H 1.08995 * 117.49858 * 144.97063 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3324 -0.5550 5 6 4.6854 1.3333 -0.5544 6 6 5.1871 2.6448 -1.1017 7 8 4.3985 3.4947 -1.4576 8 7 6.5120 2.8727 -1.1966 9 6 6.9997 4.1478 -1.7281 10 6 8.5244 4.1992 -1.6116 11 7 9.2624 3.4844 -2.6560 12 6 9.1946 3.9104 -3.9557 13 1 8.5344 4.7219 -4.2243 14 6 9.9787 3.3031 -4.9269 15 7 10.7869 2.3175 -4.5987 16 14 9.8868 3.8847 -6.6997 17 1 10.8858 4.9611 -6.9200 18 1 10.1760 2.7472 -7.6094 19 1 8.5255 4.4081 -6.9790 20 6 9.1479 5.4821 -1.0580 21 6 9.1254 4.2116 -0.2046 22 1 -1.0502 -0.0003 0.0003 23 1 3.0097 -0.8159 -0.6237 24 1 3.0094 -0.1309 1.0192 25 1 2.7916 2.1489 0.0686 26 1 2.7920 1.4640 -1.5742 27 1 5.0495 0.5168 -1.1780 28 1 5.0484 1.2019 0.4649 29 1 7.1427 2.1928 -0.9123 30 1 6.5640 4.9691 -1.1592 31 1 6.7121 4.2386 -2.7755 32 1 9.7990 2.7095 -2.4270 33 1 11.3351 1.8934 -5.2773 34 1 10.1070 5.7944 -1.4710 35 1 8.4717 6.2893 -0.7765 36 1 8.4345 4.1836 0.6380 37 1 10.0696 3.6876 -0.0560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723509249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:53 Heat of formation + Delta-G solvation = 15.190099 kcal Electronic energy + Delta-G solvation = -17482.164097 eV Core-core repulsion = 14646.686869 eV Total energy + Delta-G solvation = -2835.477228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77656 -39.01905 -36.49011 -35.27362 -34.77050 -33.17814 -31.65272 -29.48772 -27.25399 -25.93668 -23.50414 -23.00995 -21.20593 -20.56107 -19.16770 -19.05134 -17.84928 -17.26316 -16.86613 -16.57783 -16.02864 -15.54348 -15.37464 -15.03596 -14.88084 -14.41402 -13.91768 -13.62112 -13.46102 -13.18020 -12.95595 -12.82077 -12.46431 -12.28887 -12.20956 -12.00231 -11.90654 -11.59088 -11.16543 -11.00644 -10.96664 -10.94693 -10.53215 -9.96629 -9.03363 -7.97119 -5.25665 1.45871 1.46392 1.54617 1.74049 1.87122 1.94807 2.30833 2.52488 3.10932 3.37117 3.55407 3.67141 3.83392 3.87594 4.11388 4.20687 4.21132 4.32289 4.54063 4.70205 4.72027 4.82514 4.83848 4.85699 4.95213 5.04664 5.19289 5.22942 5.23305 5.34505 5.39471 5.54335 5.56204 6.26426 6.68986 6.74291 7.32516 7.35811 8.05866 8.29719 9.25231 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.004272 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.004100 B = 6552.904666 C = 7252.280563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.217 4.217 3 C -0.010 4.010 4 C -0.093 4.093 5 C -0.130 4.130 6 C 0.501 3.499 7 O -0.598 6.598 8 N -0.707 5.707 9 C 0.159 3.841 10 C 0.101 3.899 11 N -0.699 5.699 12 C -0.231 4.231 13 H 0.067 0.933 14 C -0.068 4.068 15 N -0.964 5.964 16 Si 0.964 3.036 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.276 1.276 20 C -0.189 4.189 21 C -0.149 4.149 22 H 0.241 0.759 23 H 0.102 0.898 24 H 0.110 0.890 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.115 0.885 28 H 0.130 0.870 29 H 0.412 0.588 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.379 0.621 33 H 0.251 0.749 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 -4.187 13.335 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.217 4.217 3 C -0.047 4.047 4 C -0.131 4.131 5 C -0.169 4.169 6 C 0.290 3.710 7 O -0.480 6.480 8 N -0.357 5.357 9 C 0.032 3.968 10 C 0.009 3.991 11 N -0.337 5.337 12 C -0.362 4.362 13 H 0.085 0.915 14 C -0.260 4.260 15 N -0.614 5.614 16 Si 0.793 3.207 17 H -0.214 1.214 18 H -0.221 1.221 19 H -0.202 1.202 20 C -0.229 4.229 21 C -0.187 4.187 22 H 0.257 0.743 23 H 0.121 0.879 24 H 0.128 0.872 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.133 0.867 28 H 0.148 0.852 29 H 0.248 0.752 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.212 0.788 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.571 -3.501 12.903 18.351 hybrid contribution 0.548 -0.074 -1.296 1.409 sum -12.023 -3.574 11.607 17.089 Atomic orbital electron populations 1.25715 0.97077 1.00163 1.00794 1.23835 0.95836 1.01116 1.00890 1.18841 0.83863 0.97937 1.04033 1.21159 0.93655 0.97032 1.01227 1.21700 0.96445 0.93666 1.05097 1.21497 0.81781 0.90249 0.77502 1.90664 1.56386 1.49135 1.51766 1.45911 1.07086 1.18682 1.64066 1.20911 0.92329 0.86035 0.97513 1.20346 0.89328 0.99263 0.90173 1.41816 1.55882 1.33359 1.02681 1.19394 1.17778 1.13379 0.85691 0.91483 1.25418 0.99396 0.99555 1.01667 1.69777 1.30329 1.27576 1.33726 0.85285 0.77657 0.76920 0.80788 1.21423 1.22078 1.20157 1.23379 1.02651 0.92392 1.04465 1.23143 1.02637 1.00471 0.92446 0.74291 0.87947 0.87195 0.92395 0.93380 0.86681 0.85195 0.75247 0.91255 0.94751 0.78809 0.93975 0.90484 0.87715 0.86251 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.02 19.25 74.32 1.43 -2.59 16 2 C -0.22 -4.38 13.34 31.12 0.42 -3.96 16 3 C -0.01 -0.16 5.70 28.79 0.16 0.00 16 4 C -0.09 -1.90 4.46 30.59 0.14 -1.77 16 5 C -0.13 -2.38 5.70 29.85 0.17 -2.21 16 6 C 0.50 14.77 7.83 87.66 0.69 15.45 16 7 O -0.60 -23.14 15.98 -3.04 -0.05 -23.19 16 8 N -0.71 -20.85 5.51 -463.06 -2.55 -23.41 16 9 C 0.16 5.65 5.73 86.38 0.49 6.14 16 10 C 0.10 3.70 2.15 3.60 0.01 3.71 16 11 N -0.70 -33.05 5.49 -303.32 -1.67 -34.72 16 12 C -0.23 -12.48 9.56 84.03 0.80 -11.67 16 13 H 0.07 3.63 7.77 -2.91 -0.02 3.61 16 14 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 15 N -0.96 -57.02 13.06 21.65 0.28 -56.73 16 16 Si 0.96 46.08 29.55 68.60 2.03 48.11 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 20 C -0.19 -6.17 10.11 30.62 0.31 -5.86 16 21 C -0.15 -4.23 10.14 30.62 0.31 -3.92 16 22 H 0.24 2.58 7.80 -4.41 -0.03 2.55 16 23 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 26 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 27 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.41 10.38 8.48 -92.71 -0.79 9.59 16 30 H 0.07 2.33 7.94 -2.39 -0.02 2.31 16 31 H 0.03 1.49 7.73 -2.39 -0.02 1.47 16 32 H 0.38 19.01 8.04 -92.71 -0.75 18.26 16 33 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.10 2.95 8.08 -2.39 -0.02 2.93 16 36 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -70.54 327.73 2.97 -67.57 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: -0.47 Total: 32.37 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.40 Total: -10.01 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -3.94 Total: -114.86 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.54 2.97 -67.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723509249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.763 kcal (2) G-P(sol) polarization free energy of solvation -70.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds