Wall clock time and date at job start Mon Mar 30 2020 18:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47410 * 2 1 4 4 C 1.47197 * 109.47067 * 120.00319 * 2 1 3 5 5 C 2.64600 * 109.47108 * 120.00219 * 2 1 3 6 6 C 4.07796 * 109.47249 * 120.00160 * 2 1 3 7 7 O 1.21620 * 119.99432 * 173.41980 * 6 5 4 8 8 N 1.34772 * 120.00759 * 353.41308 * 6 5 4 9 9 C 1.46506 * 119.99607 * 5.09619 * 8 6 5 10 10 C 1.46501 * 120.00604 * 185.08908 * 8 6 5 11 11 C 1.53489 * 114.20650 * 244.92133 * 10 8 6 12 12 N 1.47076 * 87.98431 * 220.14705 * 11 10 8 13 13 C 1.36933 * 136.05891 * 207.09008 * 12 11 10 14 14 H 1.08002 * 119.99980 * 354.87727 * 13 12 11 15 15 C 1.38812 * 119.99991 * 174.88329 * 13 12 11 16 16 N 1.31623 * 120.00015 * 184.55062 * 15 13 12 17 17 Si 1.86794 * 120.00032 * 4.55308 * 15 13 12 18 18 H 1.48494 * 109.47260 * 174.36709 * 17 15 13 19 19 H 1.48504 * 109.47190 * 294.36620 * 17 15 13 20 20 H 1.48508 * 109.47328 * 54.36784 * 17 15 13 21 21 C 1.47072 * 87.88196 * 27.34265 * 12 11 10 22 22 H 1.09004 * 109.46466 * 299.99973 * 1 2 3 23 23 H 1.08995 * 109.47027 * 59.99809 * 1 2 3 24 24 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46987 * 240.00092 * 2 1 3 26 26 H 1.08994 * 109.47268 * 180.02562 * 3 2 1 27 27 H 1.09008 * 109.46974 * 300.00338 * 3 2 1 28 28 H 1.09001 * 109.47364 * 59.99758 * 3 2 1 29 29 H 1.08999 * 109.47228 * 269.99847 * 9 8 6 30 30 H 1.09005 * 109.46741 * 29.99809 * 9 8 6 31 31 H 1.08993 * 109.47134 * 149.99614 * 9 8 6 32 32 H 1.08998 * 113.27420 * 17.98618 * 10 8 6 33 33 H 1.09004 * 113.47013 * 105.36885 * 11 10 8 34 34 H 1.08998 * 113.52566 * 334.93050 * 11 10 8 35 35 H 0.96996 * 119.99601 * 5.00171 * 16 15 13 36 36 H 1.08999 * 113.46160 * 87.43822 * 21 12 11 37 37 H 1.08994 * 113.46318 * 217.87876 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0207 -0.6940 1.2018 5 6 2.4120 -1.2474 2.1604 6 6 2.8894 -1.9224 3.3296 7 8 4.0034 -1.6853 3.7563 8 7 2.1045 -2.8204 3.9572 9 6 0.8084 -3.1888 3.3819 10 6 2.5472 -3.4282 5.2145 11 6 2.7891 -4.9416 5.1310 12 7 2.1708 -5.0613 6.4602 13 6 2.2650 -5.9268 7.5171 14 1 2.8717 -6.8164 7.4341 15 6 1.5805 -5.6608 8.6951 16 7 1.7412 -6.4439 9.7408 17 14 0.4314 -4.1916 8.7963 18 1 -0.2758 -4.2053 10.1019 19 1 1.2183 -2.9383 8.6727 20 1 -0.5619 -4.2632 7.6946 21 6 1.4023 -3.8458 6.1519 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 0.0376 -2.5200 3.7649 30 1 0.8558 -3.1047 2.2962 31 1 0.5677 -4.2157 3.6567 32 1 3.3489 -2.8736 5.7021 33 1 3.8448 -5.2124 5.1174 34 1 2.2185 -5.4305 4.3414 35 1 2.3914 -7.1631 9.7126 36 1 0.4656 -4.0450 5.6312 37 1 1.2766 -3.1831 7.0081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723760661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:56 Heat of formation + Delta-G solvation = 80.700634 kcal Electronic energy + Delta-G solvation = -17835.563529 eV Core-core repulsion = 15002.927051 eV Total energy + Delta-G solvation = -2832.636478 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09946 -38.12201 -36.65602 -34.75234 -32.43753 -31.84604 -28.13873 -27.59381 -26.96754 -25.40929 -24.66183 -22.57483 -20.98516 -19.17725 -18.04257 -17.49854 -16.72106 -16.21534 -15.54262 -15.28924 -14.97531 -14.34530 -13.86892 -13.79195 -13.21889 -13.03076 -12.65426 -12.42120 -12.34930 -12.19573 -11.94214 -11.82624 -11.79499 -11.63353 -11.34950 -10.61593 -10.56062 -10.43950 -10.36701 -10.07337 -9.38978 -9.19498 -8.96745 -8.39736 -7.21417 -6.35032 -3.28758 1.53945 2.19462 2.98786 3.37045 3.40694 3.51348 3.62443 3.88902 4.55661 4.58000 4.69819 4.70335 4.79102 5.00804 5.10210 5.16696 5.20957 5.36510 5.39584 5.45461 5.48746 5.57548 5.63077 5.77812 5.80345 5.81486 5.85247 6.10421 6.18598 6.34587 6.39467 6.87024 7.02046 7.13227 7.41604 8.13634 8.19525 8.92962 9.44299 10.27962 11.16504 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.040121 B = 0.004452 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.722619 B = 6287.206666 C = 6533.951586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.011 3.989 3 C -0.147 4.147 4 C -0.090 4.090 5 C -0.207 4.207 6 C 0.628 3.372 7 O -0.525 6.525 8 N -0.590 5.590 9 C 0.076 3.924 10 C 0.103 3.897 11 C 0.112 3.888 12 N -0.620 5.620 13 C -0.303 4.303 14 H 0.085 0.915 15 C -0.023 4.023 16 N -0.932 5.932 17 Si 1.072 2.928 18 H -0.293 1.293 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.083 3.917 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.049 0.951 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 13.219 -20.942 25.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.007 4.007 3 C -0.204 4.204 4 C -0.093 4.093 5 C -0.210 4.210 6 C 0.416 3.584 7 O -0.402 6.402 8 N -0.322 5.322 9 C -0.067 4.067 10 C 0.000 4.000 11 C -0.016 4.016 12 N -0.348 5.348 13 C -0.429 4.429 14 H 0.103 0.897 15 C -0.222 4.222 16 N -0.574 5.574 17 Si 0.905 3.095 18 H -0.221 1.221 19 H -0.219 1.219 20 H -0.216 1.216 21 C -0.043 4.043 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.988 13.886 -19.457 24.419 hybrid contribution 0.977 -0.971 -1.112 1.770 sum -4.012 12.915 -20.569 24.617 Atomic orbital electron populations 1.21849 0.92834 1.02846 1.02819 1.18469 0.96191 0.95217 0.90869 1.21850 1.01866 0.93958 1.02748 1.22554 0.97542 0.95269 0.93886 1.20813 1.01388 1.02077 0.96764 1.14835 0.84258 0.78782 0.80568 1.90850 1.18912 1.64688 1.65792 1.47771 1.19211 1.41245 1.23931 1.21834 0.84342 1.02130 0.98361 1.23653 0.99451 0.94302 0.82632 1.22759 0.98058 0.92038 0.88700 1.45789 1.46172 1.29615 1.13226 1.20154 1.30606 1.02841 0.89315 0.89701 1.25726 1.01795 1.03606 0.91035 1.70916 1.36781 1.20065 1.29600 0.83697 0.76035 0.74801 0.74974 1.22076 1.21851 1.21647 1.23286 0.94441 0.90155 0.96414 0.91923 0.91288 0.91896 0.88181 0.91914 0.91293 0.91955 0.92221 0.91302 0.89894 0.85590 0.92907 0.94201 0.92807 0.93350 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.15 37.16 0.34 -0.49 16 2 C 0.01 0.07 3.30 -93.41 -0.31 -0.23 16 3 C -0.15 -0.93 9.15 37.16 0.34 -0.59 16 4 C -0.09 -1.00 12.56 -37.12 -0.47 -1.47 16 5 C -0.21 -2.92 11.76 -38.84 -0.46 -3.37 16 6 C 0.63 10.66 7.52 -14.34 -0.11 10.55 16 7 O -0.52 -10.73 16.67 5.26 0.09 -10.64 16 8 N -0.59 -9.49 3.11 -176.43 -0.55 -10.04 16 9 C 0.08 0.94 8.95 59.85 0.54 1.48 16 10 C 0.10 1.97 4.50 -67.68 -0.30 1.66 16 11 C 0.11 2.29 8.26 -8.50 -0.07 2.22 16 12 N -0.62 -15.43 3.69 -184.59 -0.68 -16.11 16 13 C -0.30 -8.80 11.09 -15.06 -0.17 -8.97 16 14 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 15 C -0.02 -0.68 5.50 -17.43 -0.10 -0.77 16 16 N -0.93 -29.48 13.70 55.49 0.76 -28.72 16 17 Si 1.07 26.80 25.12 -169.99 -4.27 22.53 16 18 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 19 H -0.29 -6.88 6.28 56.52 0.36 -6.53 16 20 H -0.29 -6.68 6.72 56.52 0.38 -6.30 16 21 C 0.08 1.76 5.30 -8.36 -0.04 1.72 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.71 7.00 -51.93 -0.36 0.35 16 31 H 0.08 1.04 6.21 -51.93 -0.32 0.72 16 32 H 0.13 2.57 7.42 -51.93 -0.39 2.18 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 35 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 36 H 0.05 0.95 6.26 -51.93 -0.32 0.62 16 37 H 0.06 1.37 4.02 -51.93 -0.21 1.16 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -34.15 307.71 -6.25 -40.40 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.43 Total: -3.79 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -0.80 Total: 1.73 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.47 Total: -54.87 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.27 Total: 22.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.15 -6.25 -40.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723760661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.101 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds