Wall clock time and date at job start Mon Mar 30 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46792 * 237.09218 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00011 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00369 * 180.02562 * 6 5 4 9 9 C 1.46505 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.84648 * 25.33209 * 9 8 6 11 11 C 1.53776 * 113.61177 * 156.52864 * 9 8 6 12 12 C 1.53787 * 87.08051 * 139.98153 * 11 9 8 13 13 H 1.08989 * 113.61234 * 89.11321 * 12 11 9 14 14 N 1.46501 * 113.61204 * 219.93703 * 12 11 9 15 15 C 1.36942 * 119.99871 * 204.99770 * 14 12 11 16 16 H 1.08008 * 119.99565 * 359.97438 * 15 14 12 17 17 C 1.38807 * 120.00305 * 179.97438 * 15 14 12 18 18 N 1.31619 * 119.99958 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00088 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47082 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47238 * 120.00175 * 19 17 15 22 22 H 1.48504 * 109.47011 * 240.00372 * 19 17 15 23 23 C 1.53780 * 113.60978 * 254.13648 * 9 8 6 24 24 H 4.44649 * 5.63361 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.46765 * 117.09551 * 3 2 1 26 26 H 1.08992 * 109.47494 * 357.09583 * 3 2 1 27 27 H 1.09002 * 109.47398 * 300.00415 * 4 3 2 28 28 H 1.09001 * 109.47194 * 60.00595 * 4 3 2 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 31 31 H 0.97003 * 119.99640 * 0.02562 * 8 6 5 32 32 H 1.09003 * 113.61468 * 254.52697 * 11 9 8 33 33 H 1.08998 * 113.62073 * 25.43432 * 11 9 8 34 34 H 0.96997 * 120.00239 * 24.99764 * 14 12 11 35 35 H 0.96998 * 120.00109 * 179.97438 * 18 17 15 36 36 H 1.09002 * 113.61878 * 334.56327 * 23 9 8 37 37 H 1.09002 * 113.61276 * 105.47167 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.7846 1.2111 5 6 4.6856 0.7859 1.2108 6 6 5.1876 1.5574 2.4039 7 8 4.3992 2.0568 3.1786 8 7 6.5126 1.6927 2.6102 9 6 7.0005 2.4423 3.7705 10 1 6.2860 2.4608 4.5934 11 6 8.4251 2.0539 4.2001 12 6 8.6735 3.5509 4.4497 13 1 8.4167 3.8738 5.4584 14 7 10.0015 4.0036 4.0280 15 6 10.5663 5.1060 4.6119 16 1 10.0326 5.6419 5.3829 17 6 11.8248 5.5347 4.2128 18 7 12.4750 4.8819 3.2729 19 14 12.5950 7.0389 5.0088 20 1 11.6663 7.5895 6.0285 21 1 13.8736 6.6550 5.6589 22 1 12.8568 8.0686 3.9712 23 6 7.5671 3.8271 3.4152 24 1 -1.0501 -0.0003 -0.0001 25 1 3.0091 0.4689 -0.9149 26 1 3.0099 -1.0254 0.0521 27 1 2.7917 1.8108 1.1590 28 1 2.7925 0.3163 2.1260 29 1 5.0498 -0.2402 1.2626 30 1 5.0484 1.2543 0.2959 31 1 7.1431 1.2936 1.9904 32 1 8.4582 1.4488 5.1062 33 1 9.0276 1.6402 3.3915 34 1 10.4806 3.5225 3.3353 35 1 13.3542 5.1817 2.9937 36 1 7.9346 3.8991 2.3916 37 1 6.9085 4.6515 3.6886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752723001.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:57 Heat of formation + Delta-G solvation = 7.679484 kcal Electronic energy + Delta-G solvation = -17111.329714 eV Core-core repulsion = 14275.526801 eV Total energy + Delta-G solvation = -2835.802913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.05317 -39.38384 -36.48509 -35.74586 -34.23864 -33.13069 -31.78589 -28.90101 -26.55001 -26.32600 -24.34801 -22.73560 -21.35917 -20.64276 -19.21893 -19.00568 -17.78828 -17.47195 -16.86051 -16.34157 -16.10523 -15.44963 -15.39717 -14.97692 -14.67990 -14.40656 -13.78996 -13.50790 -13.31123 -13.25901 -13.15438 -12.84453 -12.48992 -12.20616 -12.15551 -12.03257 -11.90532 -11.74564 -11.50592 -11.15274 -10.95144 -10.89379 -10.72293 -9.93646 -8.98568 -7.95931 -5.23786 1.47857 1.48290 1.58280 1.70989 1.86716 1.94289 2.33534 2.57267 3.35892 3.54680 3.70010 3.82082 3.86856 3.97919 4.12295 4.19442 4.26717 4.32060 4.54275 4.70495 4.71823 4.81815 4.83839 4.89563 4.91463 5.15454 5.16839 5.22826 5.22935 5.34984 5.42431 5.52030 5.71412 6.26980 6.67139 6.73867 7.33493 7.35251 8.09038 8.32727 9.27290 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.061074 B = 0.002948 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.348547 B = 9496.776191 C = 9529.913188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.011 4.011 4 C -0.094 4.094 5 C -0.131 4.131 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.707 5.707 9 C 0.135 3.865 10 H 0.101 0.899 11 C -0.138 4.138 12 C 0.148 3.852 13 H 0.076 0.924 14 N -0.723 5.723 15 C -0.244 4.244 16 H 0.075 0.925 17 C -0.075 4.075 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.294 1.294 23 C -0.171 4.171 24 H 0.239 0.761 25 H 0.105 0.895 26 H 0.108 0.892 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.415 0.585 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.072 0.928 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.233 -12.714 -6.992 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.216 4.216 3 C -0.047 4.047 4 C -0.132 4.132 5 C -0.171 4.171 6 C 0.293 3.707 7 O -0.475 6.475 8 N -0.358 5.358 9 C 0.029 3.971 10 H 0.119 0.881 11 C -0.177 4.177 12 C 0.038 3.962 13 H 0.094 0.906 14 N -0.361 5.361 15 C -0.376 4.376 16 H 0.093 0.907 17 C -0.268 4.268 18 N -0.618 5.618 19 Si 0.800 3.200 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.213 4.213 24 H 0.256 0.744 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.252 0.748 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.209 0.791 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.733 -12.210 -6.311 22.436 hybrid contribution 0.841 0.806 -0.067 1.167 sum -16.892 -11.404 -6.378 21.356 Atomic orbital electron populations 1.25713 0.97118 1.00732 1.00370 1.23866 0.95891 1.00875 1.01004 1.18857 0.83724 1.02805 0.99302 1.21170 0.93930 1.00312 0.97836 1.21722 0.96260 1.02879 0.96200 1.21502 0.82007 0.79733 0.87449 1.90682 1.56449 1.50963 1.49425 1.45973 1.07255 1.54773 1.27806 1.22073 0.94355 0.91481 0.89228 0.88133 1.23642 0.94456 0.97321 1.02299 1.21710 0.84472 0.93867 0.96182 0.90611 1.42497 1.16342 1.32076 1.45169 1.19726 0.98877 1.03892 1.15107 0.90729 1.25537 0.98263 1.02592 1.00359 1.69801 1.14592 1.43254 1.34166 0.85107 0.78101 0.79162 0.77602 1.19237 1.21953 1.22150 1.24187 0.99064 0.96912 1.01100 0.74443 0.87709 0.87374 0.93150 0.92691 0.85404 0.86028 0.74753 0.90034 0.89159 0.79130 0.93984 0.90949 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.65 19.25 74.32 1.43 -2.22 16 2 C -0.22 -3.87 13.34 31.13 0.42 -3.46 16 3 C -0.01 -0.13 5.70 28.79 0.16 0.03 16 4 C -0.09 -1.60 4.46 30.59 0.14 -1.46 16 5 C -0.13 -1.76 5.70 29.85 0.17 -1.59 16 6 C 0.50 11.99 7.83 87.66 0.69 12.68 16 7 O -0.59 -20.02 15.60 -3.04 -0.05 -20.07 16 8 N -0.71 -15.79 5.36 -440.04 -2.36 -18.14 16 9 C 0.13 3.81 4.21 45.51 0.19 4.01 16 10 H 0.10 3.07 7.50 -2.39 -0.02 3.06 16 11 C -0.14 -4.02 7.58 31.12 0.24 -3.78 16 12 C 0.15 5.67 4.48 45.58 0.20 5.87 16 13 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 14 N -0.72 -35.54 5.41 -320.15 -1.73 -37.27 16 15 C -0.24 -13.44 9.97 84.03 0.84 -12.60 16 16 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 17 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 18 N -0.97 -58.22 13.06 21.65 0.28 -57.94 16 19 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 C -0.17 -5.88 7.70 31.18 0.24 -5.64 16 24 H 0.24 2.22 7.80 -4.41 -0.03 2.18 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 28 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.42 6.77 8.71 -92.71 -0.81 5.96 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 33 H 0.09 2.53 8.09 -2.39 -0.02 2.51 16 34 H 0.38 19.52 7.92 -92.71 -0.73 18.78 16 35 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -72.22 323.48 2.87 -69.35 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.48 Total: 28.12 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.18 Total: -11.97 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.81 Total: -113.36 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.07 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -72.22 2.87 -69.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752723001.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.029 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds