Wall clock time and date at job start Mon Mar 30 2020 18:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47346 * 2 1 4 4 H 1.09005 * 109.47033 * 305.00007 * 3 2 1 5 5 C 1.52997 * 109.47264 * 184.99930 * 3 2 1 6 6 N 1.46505 * 109.46985 * 184.99674 * 5 3 2 7 7 C 1.34774 * 119.99861 * 180.02562 * 6 5 3 8 8 O 1.21616 * 120.00161 * 0.02562 * 7 6 5 9 9 C 1.43197 * 119.99908 * 180.02562 * 7 6 5 10 10 C 7.26641 * 130.73702 * 1.31726 * 2 1 3 11 11 C 8.65597 * 127.27628 * 2.05436 * 2 1 3 12 12 C 1.53007 * 117.49990 * 324.15885 * 11 10 9 13 13 C 1.53001 * 117.49989 * 255.49894 * 11 10 9 14 14 N 1.46498 * 109.46890 * 64.99929 * 3 2 1 15 15 C 1.36935 * 120.00239 * 275.00034 * 14 3 2 16 16 H 1.08004 * 120.00069 * 0.02562 * 15 14 3 17 17 C 1.38811 * 120.00368 * 180.02562 * 15 14 3 18 18 N 1.31624 * 119.99540 * 359.72375 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72253 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72375 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72186 * 19 17 15 23 23 H 1.09005 * 109.47235 * 300.00051 * 1 2 3 24 24 H 1.08994 * 109.47808 * 59.99715 * 1 2 3 25 25 H 1.08999 * 109.47447 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47235 * 239.99949 * 2 1 3 27 27 H 1.09002 * 109.47057 * 119.99985 * 2 1 3 28 28 H 1.08996 * 109.47726 * 304.99907 * 5 3 2 29 29 H 1.09001 * 109.46766 * 65.00647 * 5 3 2 30 30 H 0.96994 * 120.00104 * 0.02562 * 6 5 3 31 31 H 1.09001 * 115.55086 * 109.82855 * 11 10 9 32 32 H 1.08996 * 117.49819 * 0.02562 * 12 11 10 33 33 H 1.08998 * 117.49836 * 145.01820 * 12 11 10 34 34 H 1.08994 * 117.50199 * 214.98098 * 13 11 10 35 35 H 1.08997 * 117.49822 * 359.97438 * 13 11 10 36 36 H 0.97004 * 119.99747 * 95.00774 * 14 3 2 37 37 H 0.97000 * 120.00481 * 0.27542 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0869 8 8 6.1654 2.1460 -0.2597 9 6 5.8726 4.4045 0.0307 10 6 6.2719 5.5044 0.1266 11 6 6.7725 6.8833 0.2469 12 6 8.0248 7.1087 1.0967 13 6 6.6567 7.5602 1.6142 14 7 1.6524 2.0974 1.2518 15 6 0.4156 2.6734 1.3688 16 1 -0.2743 2.6446 0.5384 17 6 0.0486 3.2945 2.5548 18 7 0.8874 3.3249 3.5687 19 14 -1.6388 4.0796 2.7147 20 1 -1.7858 4.6654 4.0714 21 1 -1.7857 5.1494 1.6951 22 1 -2.6865 3.0484 2.5046 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.9954 0.8311 0.6659 29 1 3.8498 1.0377 -1.0961 30 1 3.4410 3.5483 0.1315 31 1 6.6447 7.5087 -0.6367 32 1 8.4781 6.2358 1.5663 33 1 8.7205 7.8825 0.7724 34 1 6.4530 8.6308 1.6301 35 1 6.2094 6.9845 2.4244 36 1 2.2720 2.1231 1.9978 37 1 1.7635 2.9169 3.4858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753471642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:59 Heat of formation + Delta-G solvation = 41.473112 kcal Electronic energy + Delta-G solvation = -17563.633786 eV Core-core repulsion = 14729.296275 eV Total energy + Delta-G solvation = -2834.337511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.43262 -37.73465 -36.85037 -33.91018 -32.81460 -32.42439 -29.65176 -27.97801 -24.97481 -23.47785 -22.70169 -22.64877 -21.23389 -20.24129 -18.48961 -17.45691 -16.71743 -15.91550 -15.41579 -15.12659 -14.76166 -14.32672 -13.69092 -13.62172 -13.23351 -12.86442 -12.73054 -12.20354 -12.08516 -11.77691 -11.68458 -11.34276 -11.04142 -10.82243 -10.63876 -10.38806 -10.22719 -10.14885 -10.09276 -9.90300 -9.75479 -9.23598 -8.98846 -8.80990 -7.13236 -6.14723 -3.16530 1.67042 2.19578 3.23803 3.47836 3.50253 3.61966 3.67973 3.80725 4.23629 4.55451 4.61167 4.71434 4.87510 5.26059 5.33986 5.36811 5.42860 5.51238 5.63530 5.79449 5.80025 5.85509 5.87188 5.88002 6.05087 6.28680 6.43116 6.48553 6.52529 6.72860 6.92269 7.19597 7.26882 7.73797 7.75513 8.34425 8.69104 9.13726 10.00673 10.15360 11.32321 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.015823 B = 0.005683 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.153647 B = 4925.717757 C = 6416.240312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.056 0.944 5 C 0.113 3.887 6 N -0.698 5.698 7 C 0.629 3.371 8 O -0.538 6.538 9 C -0.208 4.208 10 C -0.063 4.063 11 C -0.063 4.063 12 C -0.163 4.163 13 C -0.159 4.159 14 N -0.733 5.733 15 C -0.329 4.329 16 H 0.068 0.932 17 C -0.043 4.043 18 N -0.941 5.941 19 Si 1.076 2.924 20 H -0.286 1.286 21 H -0.296 1.296 22 H -0.295 1.295 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.414 0.586 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.368 0.632 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 4.900 -7.123 11.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.074 0.926 5 C -0.011 4.011 6 N -0.349 5.349 7 C 0.415 3.585 8 O -0.417 6.417 9 C -0.211 4.211 10 C -0.065 4.065 11 C -0.080 4.080 12 C -0.200 4.200 13 C -0.196 4.196 14 N -0.377 5.377 15 C -0.460 4.460 16 H 0.086 0.914 17 C -0.241 4.241 18 N -0.586 5.586 19 Si 0.907 3.093 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.222 1.222 23 H 0.104 0.896 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.251 0.749 31 H 0.153 0.847 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.201 0.799 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.595 5.062 -6.380 11.136 hybrid contribution 0.818 -0.615 -0.836 1.321 sum 8.412 4.448 -7.216 11.943 Atomic orbital electron populations 1.21762 0.95519 0.99649 1.03383 1.22052 0.97171 0.98096 1.00054 1.20516 0.89547 0.92950 0.91187 0.92581 1.21800 0.95852 0.81877 1.01612 1.45873 1.06313 1.11332 1.71390 1.14692 0.82675 0.83824 0.77339 1.90818 1.56405 1.44500 1.50024 1.20737 1.02354 0.93450 1.04539 1.21292 0.97859 0.92455 0.94936 1.18868 1.03452 0.88261 0.97443 1.23118 0.90777 1.03799 1.02286 1.23138 0.99716 1.01352 0.95370 1.42475 1.16874 1.67066 1.11270 1.19996 0.92576 1.32380 1.01021 0.91407 1.25713 1.05703 1.00368 0.92279 1.70885 1.08437 1.47377 1.31946 0.83291 0.74317 0.75888 0.75799 1.21128 1.22309 1.22248 0.89603 0.94071 0.94822 0.93671 0.92624 0.91483 0.91251 0.74935 0.84735 0.88139 0.87523 0.87356 0.87845 0.79856 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.18 37.15 0.34 -2.28 16 2 C -0.13 -2.30 5.61 -26.73 -0.15 -2.45 16 3 C 0.17 3.13 2.59 -67.93 -0.18 2.96 16 4 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 1.93 5.23 -4.04 -0.02 1.91 16 6 N -0.70 -12.29 5.38 -62.77 -0.34 -12.62 16 7 C 0.63 11.63 7.65 -14.34 -0.11 11.52 16 8 O -0.54 -11.31 17.09 5.26 0.09 -11.22 16 9 C -0.21 -3.52 13.61 -38.84 -0.53 -4.04 16 10 C -0.06 -0.91 13.47 -37.13 -0.50 -1.41 16 11 C -0.06 -0.65 6.21 -93.41 -0.58 -1.23 16 12 C -0.16 -1.39 10.21 -26.69 -0.27 -1.66 16 13 C -0.16 -1.45 10.21 -26.69 -0.27 -1.73 16 14 N -0.73 -16.72 4.50 -53.43 -0.24 -16.96 16 15 C -0.33 -8.43 7.75 -15.06 -0.12 -8.55 16 16 H 0.07 1.72 7.32 -52.48 -0.38 1.33 16 17 C -0.04 -1.17 5.50 -17.43 -0.10 -1.26 16 18 N -0.94 -27.91 13.70 55.49 0.76 -27.15 16 19 Si 1.08 24.87 29.92 -169.99 -5.09 19.79 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.09 1.84 5.99 -51.93 -0.31 1.53 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.41 7.43 8.10 -40.82 -0.33 7.10 16 31 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.37 8.96 6.63 -40.82 -0.27 8.69 16 37 H 0.26 7.51 6.77 -40.82 -0.28 7.23 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -30.76 321.61 -7.89 -38.65 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.44 Total: 12.91 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -2.48 Total: -8.23 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.18 Total: -56.73 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.76 -7.89 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753471642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.119 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds