Wall clock time and date at job start Mon Mar 30 2020 18:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35674 * 117.00304 * 2 1 4 4 C 1.38922 * 119.68926 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.11594 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.75931 * 180.02562 * 5 4 3 7 7 N 1.46907 * 109.47223 * 90.00144 * 6 5 4 8 8 C 1.46898 * 111.00167 * 66.04489 * 7 6 5 9 9 C 1.46899 * 111.00061 * 190.00161 * 7 6 5 10 10 H 1.09000 * 109.46826 * 299.99650 * 9 7 6 11 11 C 1.52999 * 109.46919 * 59.99802 * 9 7 6 12 12 C 1.50699 * 109.47083 * 179.97438 * 9 7 6 13 13 H 1.07997 * 119.99799 * 332.57379 * 12 9 7 14 14 C 1.37869 * 120.00103 * 152.57572 * 12 9 7 15 15 N 1.31513 * 120.00359 * 174.17613 * 14 12 9 16 16 Si 1.86806 * 119.99891 * 354.17648 * 14 12 9 17 17 H 1.48505 * 109.47069 * 274.23013 * 16 14 12 18 18 H 1.48499 * 109.47046 * 34.23250 * 16 14 12 19 19 H 1.48500 * 109.47170 * 154.23311 * 16 14 12 20 20 C 1.38834 * 118.48143 * 0.27237 * 5 4 3 21 21 C 1.38049 * 119.29243 * 359.47935 * 20 5 4 22 22 N 1.31966 * 120.82994 * 0.53610 * 21 20 5 23 23 H 1.09002 * 109.47501 * 59.99468 * 1 2 3 24 24 H 1.08995 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46857 * 299.99679 * 1 2 3 26 26 H 1.08002 * 120.44157 * 359.97438 * 4 3 2 27 27 H 1.08992 * 109.47218 * 330.00056 * 6 5 4 28 28 H 1.09006 * 109.47228 * 209.99955 * 6 5 4 29 29 H 1.09000 * 109.47033 * 183.95846 * 8 7 6 30 30 H 1.09004 * 109.47002 * 303.95920 * 8 7 6 31 31 H 1.08995 * 109.47111 * 63.95138 * 8 7 6 32 32 H 1.08992 * 109.47477 * 52.85345 * 11 9 7 33 33 H 1.09005 * 109.46890 * 172.85219 * 11 9 7 34 34 H 1.08999 * 109.47291 * 292.84641 * 11 9 7 35 35 H 0.96998 * 120.00218 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.35214 * 179.72930 * 20 5 4 37 37 H 1.07998 * 119.58365 * 180.24984 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5130 0.0000 6 6 5.5512 2.6268 -0.0011 7 7 6.0384 2.6650 -1.3865 8 6 5.5947 3.8889 -2.0671 9 6 7.5010 2.5369 -1.4340 10 1 7.9558 3.3587 -0.8808 11 6 7.9171 1.2061 -0.8041 12 6 7.9627 2.5796 -2.8679 13 1 7.3031 2.2516 -3.6575 14 6 9.2273 3.0373 -3.1715 15 7 9.6726 2.9680 -4.4070 16 14 10.3082 3.7558 -1.8280 17 1 9.9981 5.1986 -1.6620 18 1 10.0495 3.0437 -0.5509 19 1 11.7361 3.5964 -2.2033 20 6 3.2505 3.6491 0.0069 21 6 1.8771 3.5097 0.0020 22 7 1.3186 2.3140 0.0015 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0229 0.3695 -0.0005 27 1 5.9811 1.7664 0.5116 28 1 5.8468 3.5413 0.5133 29 1 5.9093 3.8589 -3.1103 30 1 4.5081 3.9589 -2.0170 31 1 6.0375 4.7570 -1.5788 32 1 7.3647 0.3929 -1.2747 33 1 8.9860 1.0526 -0.9521 34 1 7.6971 1.2248 0.2633 35 1 10.5622 3.2904 -4.6207 36 1 3.6994 4.6313 0.0119 37 1 1.2518 4.3902 0.0032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342859927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:32 Heat of formation + Delta-G solvation = 7.260413 kcal Electronic energy + Delta-G solvation = -18289.156421 eV Core-core repulsion = 15453.335336 eV Total energy + Delta-G solvation = -2835.821085 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.54679 -38.19934 -36.96397 -33.39849 -32.03646 -30.70645 -29.81710 -27.77872 -26.81950 -24.78785 -23.91965 -23.05653 -21.34913 -19.36818 -17.79995 -17.09060 -16.77976 -15.96826 -15.79698 -15.20080 -14.49469 -14.38730 -14.18803 -13.88637 -13.23824 -13.17609 -12.65582 -12.50374 -12.22153 -11.96890 -11.67744 -11.48737 -11.19325 -11.05683 -10.91720 -10.62648 -10.42941 -10.36676 -9.83966 -9.53863 -9.45081 -9.07949 -8.60895 -8.39995 -7.41460 -6.11623 -4.10149 1.29287 1.38126 3.13100 3.22771 3.32499 3.33388 3.86425 4.36475 4.37761 4.77024 5.03423 5.10717 5.19196 5.23034 5.24690 5.25762 5.34355 5.52230 5.67408 5.89706 5.94489 6.01756 6.09527 6.25376 6.37414 6.47018 6.54255 6.60426 6.63280 6.82668 6.95862 7.25329 7.30111 7.58464 7.89373 7.92576 8.02412 8.60939 8.98705 9.51417 11.01297 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.039009 B = 0.004939 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.613789 B = 5667.927227 C = 5829.099947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.314 3.686 4 C -0.169 4.169 5 C 0.015 3.985 6 C 0.079 3.921 7 N -0.523 5.523 8 C 0.035 3.965 9 C 0.181 3.819 10 H 0.000 1.000 11 C -0.136 4.136 12 C -0.503 4.503 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.870 3.130 17 H -0.278 1.278 18 H -0.264 1.264 19 H -0.287 1.287 20 C -0.204 4.204 21 C 0.132 3.868 22 N -0.548 5.548 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.141 0.859 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.012 0.988 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.133 0.867 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 -0.520 10.840 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.217 6.217 3 C 0.135 3.865 4 C -0.190 4.190 5 C 0.007 3.993 6 C -0.049 4.049 7 N -0.247 5.247 8 C -0.113 4.113 9 C 0.075 3.925 10 H 0.018 0.982 11 C -0.195 4.195 12 C -0.542 4.542 13 H 0.100 0.900 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.697 3.303 17 H -0.204 1.204 18 H -0.189 1.189 19 H -0.213 1.213 20 C -0.225 4.225 21 C -0.023 4.023 22 N -0.273 5.273 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.159 0.841 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.151 0.849 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.935 -1.237 10.460 18.276 hybrid contribution 1.674 1.375 0.991 2.382 sum -13.261 0.137 11.451 17.521 Atomic orbital electron populations 1.22790 0.77714 1.02577 1.02216 1.86239 1.22520 1.24825 1.88110 1.19800 0.89341 0.84509 0.92814 1.20931 0.91495 0.99438 1.07119 1.20164 0.96652 0.91714 0.90746 1.21204 0.88888 1.01579 0.93224 1.62143 1.14376 1.37438 1.10790 1.22280 0.98088 0.89530 1.01400 1.19740 0.82380 0.92841 0.97554 0.98237 1.22054 1.00877 0.99926 0.96596 1.20867 0.99743 1.42854 0.90689 0.90039 1.24948 0.97455 0.95414 0.95109 1.69890 1.18390 1.46789 1.18337 0.86993 0.80080 0.80008 0.83212 1.20405 1.18866 1.21346 1.21928 0.94643 0.99560 1.06331 1.22247 0.92667 0.93455 0.93939 1.67237 1.41034 0.98854 1.20160 0.92459 0.88929 0.92597 0.84088 0.89408 0.94333 0.89704 0.93329 0.96969 0.92564 0.93062 0.96013 0.92574 0.84877 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.33 10.48 -18.72 -0.20 -4.53 16 3 C 0.31 4.72 7.49 -17.12 -0.13 4.59 16 4 C -0.17 -2.58 9.75 -39.28 -0.38 -2.96 16 5 C 0.02 0.23 4.90 -104.35 -0.51 -0.28 16 6 C 0.08 1.31 4.97 -4.97 -0.02 1.28 16 7 N -0.52 -10.60 4.61 -237.73 -1.10 -11.70 16 8 C 0.04 0.68 8.94 60.06 0.54 1.22 16 9 C 0.18 4.17 1.61 -68.87 -0.11 4.06 16 10 H 0.00 0.00 5.71 -51.93 -0.30 -0.30 16 11 C -0.14 -2.86 8.43 37.16 0.31 -2.55 16 12 C -0.50 -13.69 7.57 -34.44 -0.26 -13.95 16 13 H 0.08 2.46 7.82 -52.49 -0.41 2.05 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16 16 Si 0.87 20.96 26.37 -169.99 -4.48 16.48 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.26 -6.06 6.39 56.52 0.36 -5.70 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C -0.20 -2.71 8.06 -39.43 -0.32 -3.03 16 21 C 0.13 1.66 11.18 -17.56 -0.20 1.46 16 22 N -0.55 -7.84 9.22 -13.33 -0.12 -7.97 16 23 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 24 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 26 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 27 H 0.09 1.41 5.94 -51.93 -0.31 1.10 16 28 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.08 1.85 6.83 -51.93 -0.35 1.50 16 30 H 0.05 0.83 5.93 -51.93 -0.31 0.52 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 1.11 7.24 -51.93 -0.38 0.74 16 34 H 0.02 0.38 6.59 -51.93 -0.34 0.04 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.13 1.56 8.03 -52.49 -0.42 1.14 16 37 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 301.21 15.07 4.54 4.54 Total: -1.00 -30.44 301.21 -6.08 -36.52 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.37 Total: -0.61 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.13 Total: -6.72 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.45 Total: -45.68 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.20 Total: -4.53 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.48 Total: 16.48 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.44 -6.08 -36.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342859927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.783 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds