Wall clock time and date at job start Mon Mar 30 2020 18:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35674 * 117.00304 * 2 1 4 4 C 1.38922 * 119.68926 * 180.02562 * 3 2 1 5 5 C 1.38373 * 119.11594 * 180.02562 * 4 3 2 6 6 C 1.50695 * 120.75931 * 180.02562 * 5 4 3 7 7 N 1.46907 * 109.47223 * 90.00144 * 6 5 4 8 8 C 1.46898 * 111.00167 * 66.04489 * 7 6 5 9 9 C 1.46899 * 111.00061 * 190.00161 * 7 6 5 10 10 H 1.09000 * 109.46826 * 299.99650 * 9 7 6 11 11 C 1.52999 * 109.46919 * 59.99802 * 9 7 6 12 12 C 1.50699 * 109.47083 * 179.97438 * 9 7 6 13 13 H 1.07997 * 119.99799 * 332.57379 * 12 9 7 14 14 C 1.37869 * 120.00103 * 152.57572 * 12 9 7 15 15 N 1.31513 * 120.00359 * 174.17613 * 14 12 9 16 16 Si 1.86806 * 119.99891 * 354.17648 * 14 12 9 17 17 H 1.48505 * 109.47069 * 274.23013 * 16 14 12 18 18 H 1.48499 * 109.47046 * 34.23250 * 16 14 12 19 19 H 1.48500 * 109.47170 * 154.23311 * 16 14 12 20 20 C 1.38834 * 118.48143 * 0.27237 * 5 4 3 21 21 C 1.38049 * 119.29243 * 359.47935 * 20 5 4 22 22 N 1.31966 * 120.82994 * 0.53610 * 21 20 5 23 23 H 1.09002 * 109.47501 * 59.99468 * 1 2 3 24 24 H 1.08995 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46857 * 299.99679 * 1 2 3 26 26 H 1.08002 * 120.44157 * 359.97438 * 4 3 2 27 27 H 1.08992 * 109.47218 * 330.00056 * 6 5 4 28 28 H 1.09006 * 109.47228 * 209.99955 * 6 5 4 29 29 H 1.09000 * 109.47033 * 183.95846 * 8 7 6 30 30 H 1.09004 * 109.47002 * 303.95920 * 8 7 6 31 31 H 1.08995 * 109.47111 * 63.95138 * 8 7 6 32 32 H 1.08992 * 109.47477 * 52.85345 * 11 9 7 33 33 H 1.09005 * 109.46890 * 172.85219 * 11 9 7 34 34 H 1.08999 * 109.47291 * 292.84641 * 11 9 7 35 35 H 0.96998 * 120.00218 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.35214 * 179.72930 * 20 5 4 37 37 H 1.07998 * 119.58365 * 180.24984 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5130 0.0000 6 6 5.5512 2.6268 -0.0011 7 7 6.0384 2.6650 -1.3865 8 6 5.5947 3.8889 -2.0671 9 6 7.5010 2.5369 -1.4340 10 1 7.9558 3.3587 -0.8808 11 6 7.9171 1.2061 -0.8041 12 6 7.9627 2.5796 -2.8679 13 1 7.3031 2.2516 -3.6575 14 6 9.2273 3.0373 -3.1715 15 7 9.6726 2.9680 -4.4070 16 14 10.3082 3.7558 -1.8280 17 1 9.9981 5.1986 -1.6620 18 1 10.0495 3.0437 -0.5509 19 1 11.7361 3.5964 -2.2033 20 6 3.2505 3.6491 0.0069 21 6 1.8771 3.5097 0.0020 22 7 1.3186 2.3140 0.0015 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0229 0.3695 -0.0005 27 1 5.9811 1.7664 0.5116 28 1 5.8468 3.5413 0.5133 29 1 5.9093 3.8589 -3.1103 30 1 4.5081 3.9589 -2.0170 31 1 6.0375 4.7570 -1.5788 32 1 7.3647 0.3929 -1.2747 33 1 8.9860 1.0526 -0.9521 34 1 7.6971 1.2248 0.2633 35 1 10.5622 3.2904 -4.6207 36 1 3.6994 4.6313 0.0119 37 1 1.2518 4.3902 0.0032 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342859927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:31 Heat of formation + Delta-G solvation = -15.353322 kcal Electronic energy + Delta-G solvation = -18290.137026 eV Core-core repulsion = 15453.335336 eV Total energy + Delta-G solvation = -2836.801690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60871 -39.41368 -38.34583 -35.05138 -33.69565 -31.91115 -31.33612 -29.05021 -27.93893 -26.62409 -25.32886 -24.20180 -22.60283 -21.07176 -19.19289 -18.67129 -17.98839 -17.05132 -16.90125 -16.75712 -16.07560 -15.80111 -15.36366 -15.16218 -14.72448 -14.49236 -14.22536 -14.20550 -13.42237 -13.20398 -13.10566 -12.84881 -12.67342 -12.53763 -12.28931 -12.23630 -12.05933 -11.97724 -11.74433 -11.11492 -10.73915 -10.60635 -10.58305 -9.44113 -8.99400 -8.26834 -6.29768 0.23532 0.27643 1.33883 1.36223 1.46406 2.17097 2.34709 2.76280 3.07335 3.37586 3.44385 3.81683 4.01609 4.19621 4.22522 4.43582 4.45968 4.47802 4.54256 4.57715 4.65320 4.76878 4.80808 4.84250 4.88044 4.93885 4.98546 5.14323 5.27583 5.40827 5.49279 5.52734 5.71616 6.05795 6.29407 6.35612 6.68121 6.78742 6.88222 7.35949 8.90130 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.039009 B = 0.004939 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.613789 B = 5667.927227 C = 5829.099947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.325 6.325 3 C 0.302 3.698 4 C -0.184 4.184 5 C 0.004 3.996 6 C 0.083 3.917 7 N -0.539 5.539 8 C 0.042 3.958 9 C 0.183 3.817 10 H 0.002 0.998 11 C -0.132 4.132 12 C -0.500 4.500 13 H 0.033 0.967 14 C 0.015 3.985 15 N -0.948 5.948 16 Si 0.934 3.066 17 H -0.270 1.270 18 H -0.240 1.240 19 H -0.288 1.288 20 C -0.203 4.203 21 C 0.135 3.865 22 N -0.555 5.555 23 H 0.054 0.946 24 H 0.120 0.880 25 H 0.059 0.941 26 H 0.138 0.862 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.265 0.735 36 H 0.153 0.847 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 0.341 13.399 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.233 6.233 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.004 4.004 6 C -0.044 4.044 7 N -0.263 5.263 8 C -0.106 4.106 9 C 0.076 3.924 10 H 0.020 0.980 11 C -0.190 4.190 12 C -0.539 4.539 13 H 0.051 0.949 14 C -0.182 4.182 15 N -0.588 5.588 16 Si 0.758 3.242 17 H -0.196 1.196 18 H -0.163 1.163 19 H -0.214 1.214 20 C -0.224 4.224 21 C -0.020 4.020 22 N -0.280 5.280 23 H 0.072 0.928 24 H 0.138 0.862 25 H 0.078 0.922 26 H 0.156 0.844 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.171 0.829 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.941 -0.392 13.042 20.600 hybrid contribution 1.803 1.072 0.147 2.103 sum -14.138 0.680 13.188 19.346 Atomic orbital electron populations 1.23030 0.75889 1.04488 1.02215 1.86218 1.24406 1.24640 1.87991 1.19940 0.89481 0.85112 0.93091 1.21001 0.91949 0.99607 1.08001 1.20094 0.95939 0.92414 0.91964 1.21201 0.89887 1.02536 0.90791 1.61978 1.12624 1.38053 1.13668 1.22171 0.99552 0.89645 0.99203 1.19602 0.84220 0.93948 0.94608 0.98043 1.21951 1.00058 0.98347 0.98689 1.21035 0.99012 1.41708 0.92139 0.94887 1.25788 0.99075 0.95969 0.97404 1.70050 1.19080 1.48793 1.20920 0.85946 0.77723 0.79545 0.80949 1.19591 1.16342 1.21411 1.22159 0.94909 0.99760 1.05530 1.22863 0.92989 0.93956 0.92160 1.67328 1.41197 0.99245 1.20245 0.92757 0.86174 0.92202 0.84433 0.88850 0.92835 0.93427 0.90913 0.96119 0.93205 0.94036 0.92405 0.92576 0.82934 0.79184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.38 113.37 1.18 1.90 16 2 O -0.32 -8.76 10.48 -89.91 -0.94 -9.70 16 3 C 0.30 8.70 7.49 84.79 0.63 9.33 16 4 C -0.18 -5.42 9.75 22.47 0.22 -5.20 16 5 C 0.00 0.11 4.90 -19.69 -0.10 0.02 16 6 C 0.08 2.55 4.97 85.55 0.43 2.97 16 7 N -0.54 -21.25 4.61 -906.05 -4.18 -25.43 16 8 C 0.04 1.61 8.94 127.69 1.14 2.75 16 9 C 0.18 8.24 1.61 44.17 0.07 8.31 16 10 H 0.00 0.09 5.71 -2.39 -0.01 0.08 16 11 C -0.13 -5.32 8.43 71.98 0.61 -4.72 16 12 C -0.50 -27.91 7.57 25.60 0.19 -27.71 16 13 H 0.03 2.11 7.82 -2.91 -0.02 2.08 16 14 C 0.02 0.85 5.47 84.65 0.46 1.32 16 15 N -0.95 -58.56 13.96 21.44 0.30 -58.26 16 16 Si 0.93 42.79 26.37 68.60 1.81 44.60 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 18 H -0.24 -10.00 6.39 99.48 0.64 -9.36 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 20 C -0.20 -4.76 8.06 22.37 0.18 -4.58 16 21 C 0.14 2.97 11.18 84.63 0.95 3.91 16 22 N -0.56 -14.68 9.22 -308.95 -2.85 -17.53 16 23 H 0.05 1.04 8.10 -2.39 -0.02 1.03 16 24 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 27 H 0.09 2.73 5.94 -2.39 -0.01 2.72 16 28 H 0.05 1.50 8.08 -2.38 -0.02 1.48 16 29 H 0.05 2.14 6.83 -2.39 -0.02 2.12 16 30 H 0.07 2.36 5.93 -2.38 -0.01 2.35 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.04 1.72 7.24 -2.38 -0.02 1.70 16 34 H 0.06 1.90 6.59 -2.39 -0.02 1.88 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.15 2.96 8.03 -2.91 -0.02 2.93 16 37 H 0.19 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -67.27 301.21 1.08 -66.19 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.98 Total: 11.83 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 5.96 Total: -11.70 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -6.73 Total: -101.22 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.94 Total: -9.70 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.81 Total: 44.60 kcal Total: -67.27 1.08 -66.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342859927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.837 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds