Wall clock time and date at job start Mon Mar 30 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.47094 * 2 1 4 4 C 1.36931 * 120.00163 * 274.40395 * 3 2 1 5 5 H 1.07996 * 120.00353 * 337.78318 * 4 3 2 6 6 C 1.38815 * 119.99943 * 157.78247 * 4 3 2 7 7 N 1.31616 * 120.00322 * 7.79790 * 6 4 3 8 8 Si 1.86803 * 120.00045 * 187.80063 * 6 4 3 9 9 H 1.48504 * 109.47021 * 89.99651 * 8 6 4 10 10 H 1.48502 * 109.47339 * 209.99815 * 8 6 4 11 11 H 1.48496 * 109.47045 * 330.00018 * 8 6 4 12 12 C 1.46508 * 119.99595 * 94.40329 * 3 2 1 13 13 C 1.50707 * 109.46961 * 269.99773 * 12 3 2 14 14 O 1.21335 * 119.99966 * 0.02562 * 13 12 3 15 15 C 1.46450 * 119.99565 * 180.02562 * 13 12 3 16 16 C 1.46899 * 127.06589 * 0.02803 * 15 13 12 17 17 C 1.34354 * 106.35698 * 179.97438 * 16 15 13 18 18 C 1.50702 * 125.41963 * 179.97438 * 17 16 15 19 19 N 1.36492 * 109.16472 * 359.74238 * 17 16 15 20 20 H 0.96996 * 124.77837 * 180.26668 * 19 17 16 21 21 C 1.34492 * 110.44292 * 0.43886 * 19 17 16 22 22 C 1.50700 * 125.91738 * 179.82658 * 21 19 17 23 23 H 1.09000 * 109.46968 * 59.99670 * 1 2 3 24 24 H 1.09003 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46969 * 299.99730 * 1 2 3 26 26 H 1.08994 * 109.46969 * 240.00270 * 2 1 3 27 27 H 1.09000 * 109.46968 * 120.00330 * 2 1 3 28 28 H 0.97001 * 120.00108 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46826 * 150.00324 * 12 3 2 30 30 H 1.08986 * 109.47367 * 30.00073 * 12 3 2 31 31 H 1.07998 * 126.82068 * 0.02562 * 16 15 13 32 32 H 1.08995 * 109.46751 * 90.00165 * 18 17 16 33 33 H 1.08992 * 109.47115 * 210.00182 * 18 17 16 34 34 H 1.08998 * 109.46607 * 330.00477 * 18 17 16 35 35 H 1.09006 * 109.47263 * 269.68889 * 22 21 19 36 36 H 1.09003 * 109.47017 * 149.69360 * 22 21 19 37 37 H 1.08995 * 109.47267 * 29.69108 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1608 2.0571 -1.1823 5 1 2.2681 1.5103 -2.1074 6 6 2.1672 3.4452 -1.1919 7 7 2.1912 4.1110 -0.0568 8 14 2.1416 4.3682 -2.8157 9 1 0.7350 4.6193 -3.2202 10 1 2.8507 5.6636 -2.6601 11 1 2.8187 3.5553 -3.8578 12 6 2.3544 2.0393 1.2651 13 6 1.1339 2.7372 1.8079 14 8 0.0861 2.6891 1.1981 15 6 1.2128 3.4733 3.0715 16 6 2.3931 3.6322 3.9315 17 6 2.0018 4.3804 4.9766 18 6 2.8807 4.8040 6.1251 19 7 0.6830 4.7001 4.8300 20 1 0.1713 5.2376 5.4545 21 6 0.1920 4.1618 3.6995 22 6 -1.2241 4.2921 3.2008 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1953 5.0810 -0.0635 29 1 3.1454 2.7698 1.0957 30 1 2.6960 1.2937 1.9830 31 1 3.3796 3.2286 3.7577 32 1 3.3520 5.7581 5.8892 33 1 2.2758 4.9104 7.0255 34 1 3.6500 4.0500 6.2912 35 1 -1.8246 3.4714 3.5935 36 1 -1.2302 4.2578 2.1114 37 1 -1.6418 5.2411 3.5369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348105629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:17:44 Heat of formation + Delta-G solvation = 27.625138 kcal Electronic energy + Delta-G solvation = -19029.984710 eV Core-core repulsion = 16195.046706 eV Total energy + Delta-G solvation = -2834.938004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.55264 -37.41668 -34.96015 -32.14076 -31.67737 -30.57735 -29.02678 -28.69180 -26.64153 -24.24436 -23.37892 -21.37469 -20.07834 -19.64542 -17.45491 -16.62345 -16.08304 -14.93431 -14.50508 -13.93882 -13.75484 -13.61855 -13.25762 -13.03501 -12.98196 -12.60617 -12.30112 -12.00213 -11.91856 -11.78831 -11.74934 -11.54896 -11.02364 -10.81666 -10.73305 -10.63891 -10.26323 -9.87554 -9.72034 -9.53852 -8.61919 -8.07489 -7.89841 -7.32161 -6.58062 -5.64447 -3.04477 2.53222 2.99529 3.47340 3.53434 3.54304 3.63997 4.56644 4.75854 5.19416 5.32127 5.46040 5.49014 5.62851 5.67078 5.68352 5.85680 5.98479 6.04107 6.25654 6.29667 6.43890 6.55915 6.59780 6.64946 6.68864 6.78642 6.90017 7.15010 7.37010 7.47907 7.52439 7.65252 7.77769 7.86758 7.99846 8.53845 9.32256 9.61735 9.99703 10.45853 11.41048 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020954 B = 0.007839 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.960562 B = 3570.947736 C = 3968.604387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 N -0.587 5.587 4 C -0.233 4.233 5 H 0.071 0.929 6 C 0.002 3.998 7 N -0.906 5.906 8 Si 0.906 3.094 9 H -0.290 1.290 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.146 3.854 13 C 0.436 3.564 14 O -0.477 6.477 15 C -0.212 4.212 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.077 4.077 19 N -0.556 5.556 20 H 0.402 0.598 21 C 0.065 3.935 22 C -0.084 4.084 23 H 0.050 0.950 24 H 0.023 0.977 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.253 0.747 29 H 0.119 0.881 30 H 0.024 0.976 31 H 0.140 0.860 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 0.308 11.824 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 N -0.308 5.308 4 C -0.362 4.362 5 H 0.089 0.911 6 C -0.194 4.194 7 N -0.554 5.554 8 Si 0.737 3.263 9 H -0.217 1.217 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.020 3.980 13 C 0.312 3.688 14 O -0.353 6.353 15 C -0.220 4.220 16 C -0.173 4.173 17 C -0.125 4.125 18 C -0.134 4.134 19 N -0.153 5.153 20 H 0.237 0.763 21 C -0.050 4.050 22 C -0.142 4.142 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.042 0.958 31 H 0.158 0.842 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.343 0.491 11.559 11.647 hybrid contribution -0.355 1.187 -0.447 1.317 sum -1.698 1.678 11.113 11.366 Atomic orbital electron populations 1.22359 0.99345 0.97724 1.02771 1.20816 0.92415 0.86805 0.98063 1.43853 1.74264 1.09913 1.02748 1.19238 1.41884 0.88877 0.86232 0.91120 1.24914 1.01127 0.96580 0.96752 1.69681 1.55766 1.06493 1.23424 0.86214 0.77504 0.79141 0.83416 1.21724 1.22005 1.20791 1.21044 0.96569 0.95071 0.85355 1.22189 0.90067 0.76814 0.79740 1.90275 1.32491 1.55702 1.56837 1.21855 0.92427 1.07715 1.00018 1.21833 0.98374 1.02828 0.94254 1.20021 0.84705 1.06902 1.00911 1.20222 0.97749 1.01746 0.93732 1.41353 1.09813 1.43668 1.20420 0.76262 1.20803 0.96512 0.99453 0.88244 1.20426 0.89141 1.00274 1.04333 0.93101 0.95766 0.92555 0.94308 0.94697 0.93615 0.86368 0.95841 0.84249 0.91674 0.92597 0.90466 0.91558 0.88063 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.65 37.16 0.36 -3.17 16 2 C 0.15 3.24 6.44 -4.04 -0.03 3.21 16 3 N -0.59 -15.22 2.07 -174.61 -0.36 -15.58 16 4 C -0.23 -6.54 9.70 -15.06 -0.15 -6.68 16 5 H 0.07 1.95 7.84 -52.49 -0.41 1.54 16 6 C 0.00 0.07 5.41 -17.43 -0.09 -0.03 16 7 N -0.91 -25.94 8.21 55.49 0.46 -25.49 16 8 Si 0.91 22.69 29.56 -169.99 -5.02 17.66 16 9 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 10 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.15 3.61 5.03 -5.19 -0.03 3.59 16 13 C 0.44 10.75 5.08 -31.00 -0.16 10.60 16 14 O -0.48 -12.90 12.42 5.51 0.07 -12.83 16 15 C -0.21 -4.54 6.29 -103.09 -0.65 -5.19 16 16 C -0.15 -2.72 10.58 -37.45 -0.40 -3.12 16 17 C -0.02 -0.26 7.11 -81.89 -0.58 -0.84 16 18 C -0.08 -0.82 10.40 36.01 0.37 -0.45 16 19 N -0.56 -8.30 5.89 -5.15 -0.03 -8.33 16 20 H 0.40 4.49 8.96 -40.82 -0.37 4.13 16 21 C 0.06 1.21 7.23 -81.43 -0.59 0.62 16 22 C -0.08 -1.42 9.90 36.01 0.36 -1.06 16 23 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 1.31 6.38 -51.93 -0.33 0.98 16 26 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.03 0.70 7.84 -51.93 -0.41 0.29 16 28 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.12 3.16 6.24 -51.93 -0.32 2.84 16 30 H 0.02 0.53 7.86 -51.94 -0.41 0.12 16 31 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 2.06 6.52 -51.93 -0.34 1.72 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -32.41 305.37 -7.39 -39.80 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.52 Total: 2.69 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.58 Total: -2.52 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.06 Total: -49.40 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.41 -7.39 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348105629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.421 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds