Wall clock time and date at job start Mon Mar 30 2020 18:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 5 5 C 1.46903 * 110.99908 * 274.99684 * 4 2 1 6 6 C 1.52996 * 109.47400 * 179.97438 * 5 4 2 7 7 C 1.52999 * 109.47333 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47164 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99684 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99855 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99950 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00191 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47230 * 89.99939 * 12 10 8 14 14 H 1.48494 * 109.47332 * 209.99894 * 12 10 8 15 15 H 1.48497 * 109.47077 * 330.00067 * 12 10 8 16 16 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 17 17 C 1.38831 * 120.75389 * 279.72515 * 16 2 1 18 18 C 1.38047 * 119.28625 * 179.75217 * 17 16 2 19 19 N 1.31967 * 120.83451 * 0.53156 * 18 17 16 20 20 C 1.32250 * 121.64657 * 359.71855 * 19 18 17 21 21 O 1.35681 * 119.68239 * 180.02562 * 20 19 18 22 22 C 1.38373 * 120.75824 * 99.99948 * 16 2 1 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.00895 * 111.00219 * 151.04779 * 4 2 1 27 27 H 1.09003 * 109.46856 * 300.00136 * 5 4 2 28 28 H 1.09001 * 109.47072 * 60.00127 * 5 4 2 29 29 H 1.09000 * 109.47322 * 300.00427 * 6 5 4 30 30 H 1.09001 * 109.46886 * 60.00036 * 6 5 4 31 31 H 1.09003 * 109.47173 * 299.99675 * 7 6 5 32 32 H 1.08992 * 109.47026 * 60.00010 * 7 6 5 33 33 H 0.96995 * 120.00001 * 179.97438 * 11 10 8 34 34 H 1.07999 * 120.35909 * 359.97438 * 17 16 2 35 35 H 1.08002 * 119.58442 * 180.25138 * 18 17 16 36 36 H 0.96696 * 114.00228 * 270.02245 * 21 20 19 37 37 H 1.08005 * 120.44440 * 0.02725 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5332 3.5744 7 6 2.6599 0.4198 4.7697 8 6 3.1653 -0.3245 5.9787 9 1 3.4149 -1.3725 5.9023 10 6 3.3091 0.3324 7.1823 11 7 3.7497 -0.3172 8.2375 12 14 2.8781 2.1452 7.3143 13 1 1.4487 2.2881 7.6906 14 1 3.7290 2.7821 8.3513 15 1 3.1139 2.8066 6.0058 16 6 2.0323 -0.7104 -1.2305 17 6 2.0789 -2.0971 -1.2803 18 6 2.5396 -2.7166 -2.4247 19 7 2.9437 -2.0075 -3.4618 20 6 2.9191 -0.6853 -3.4504 21 8 3.3436 0.0040 -4.5392 22 6 2.4628 0.0045 -2.3342 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 2.9172 -1.1205 1.0287 27 1 2.7589 1.0461 2.1181 28 1 1.0871 0.6163 2.5525 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9273 3.3691 31 1 3.3364 1.2434 4.5415 32 1 1.6644 0.8134 4.9749 33 1 3.8512 0.1451 9.0842 34 1 1.7548 -2.6849 -0.4343 35 1 2.5741 -3.7951 -2.4702 36 1 4.2870 0.2160 -4.5274 37 1 2.4448 1.0844 -2.3279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381301473.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:09 Heat of formation + Delta-G solvation = -19.354352 kcal Electronic energy + Delta-G solvation = -17394.023844 eV Core-core repulsion = 14557.048657 eV Total energy + Delta-G solvation = -2836.975188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.78808 -37.96713 -36.79888 -34.41196 -32.68706 -31.25422 -30.44328 -29.45519 -26.50408 -24.31967 -23.73969 -22.22368 -20.96438 -20.15765 -18.52508 -17.12639 -16.86952 -16.45221 -15.86089 -15.54166 -14.97344 -14.59637 -14.20560 -13.88299 -13.84499 -13.15927 -12.69844 -12.62938 -12.34590 -12.14040 -12.03269 -11.95888 -11.66608 -11.27664 -10.98944 -10.79003 -10.02933 -9.90263 -9.77379 -9.70593 -9.56023 -9.19363 -9.17909 -8.55156 -8.42254 -6.05282 -4.03283 0.76171 0.91065 3.19736 3.29126 3.36530 3.39510 3.55277 4.05432 4.29403 4.43809 4.51330 4.82141 4.85708 5.00452 5.17222 5.28537 5.32531 5.39749 5.51801 5.55093 5.65529 5.72286 5.80140 6.01185 6.07101 6.16724 6.27392 6.49423 6.52323 6.87614 7.08624 7.18114 7.30233 7.36884 7.45481 7.65870 7.78691 8.53491 9.00131 9.57212 11.08313 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.039471 B = 0.003481 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.205584 B = 8041.324466 C = 8186.732260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.120 3.880 3 H 0.055 0.945 4 N -0.682 5.682 5 C 0.056 3.944 6 C -0.099 4.099 7 C -0.013 4.013 8 C -0.520 4.520 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.904 5.904 12 Si 0.881 3.119 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C -0.026 4.026 17 C -0.162 4.162 18 C 0.121 3.879 19 N -0.508 5.508 20 C 0.306 3.694 21 O -0.484 6.484 22 C -0.182 4.182 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.341 0.659 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.013 0.987 32 H 0.011 0.989 33 H 0.263 0.737 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.399 0.601 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 0.632 -22.031 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 H 0.073 0.927 4 N -0.313 5.313 5 C -0.072 4.072 6 C -0.137 4.137 7 C -0.051 4.051 8 C -0.558 4.558 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.543 5.543 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.035 4.035 17 C -0.182 4.182 18 C -0.035 4.035 19 N -0.227 5.227 20 C 0.127 3.873 21 O -0.291 6.291 22 C -0.203 4.203 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.160 0.840 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.168 0.832 35 H 0.179 0.821 36 H 0.257 0.743 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.009 0.011 -22.614 22.967 hybrid contribution 0.811 1.998 0.790 2.296 sum -3.198 2.009 -21.824 22.148 Atomic orbital electron populations 1.21779 0.92997 1.02900 1.01637 1.20511 0.96580 0.95368 0.86560 0.92673 1.60684 1.33530 1.33637 1.03497 1.22234 1.00654 0.93730 0.90618 1.21442 1.00088 0.99159 0.93022 1.19540 0.96254 0.95382 0.93883 1.21146 1.43596 0.98296 0.92731 0.91016 1.25045 0.94695 0.98114 0.95739 1.69915 1.46890 1.36619 1.00910 0.86764 0.78566 0.85885 0.77959 1.20277 1.21415 1.19128 1.20385 0.93998 0.94061 0.95011 1.22165 1.00939 0.94763 1.00343 1.22573 0.93409 1.00038 0.87521 1.67155 1.17647 1.07894 1.29994 1.19113 0.95651 0.86956 0.85564 1.84777 1.30626 1.72952 1.40783 1.22006 1.03738 1.01734 0.92849 0.91595 0.91660 0.92694 0.84007 0.95608 0.91207 0.91836 0.93010 0.96882 0.97035 0.92748 0.83205 0.82092 0.74314 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.40 37.16 0.35 -1.03 16 2 C 0.12 1.28 2.85 -68.87 -0.20 1.09 16 3 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 4 N -0.68 -8.56 5.76 -107.95 -0.62 -9.18 16 5 C 0.06 0.85 5.48 -3.82 -0.02 0.83 16 6 C -0.10 -1.89 5.41 -26.73 -0.14 -2.03 16 7 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 9 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 10 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 11 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 12 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 16 C -0.03 -0.27 4.73 -104.35 -0.49 -0.76 16 17 C -0.16 -1.57 9.11 -39.43 -0.36 -1.93 16 18 C 0.12 1.18 11.18 -17.56 -0.20 0.98 16 19 N -0.51 -5.97 10.39 -13.33 -0.14 -6.11 16 20 C 0.31 3.35 7.74 -17.12 -0.13 3.22 16 21 O -0.48 -4.60 13.56 -18.75 -0.25 -4.85 16 22 C -0.18 -1.82 9.71 -39.28 -0.38 -2.20 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.34 4.14 8.00 -39.29 -0.31 3.83 16 27 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 28 H 0.07 1.05 7.44 -51.93 -0.39 0.67 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 32 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.15 1.35 7.79 -52.49 -0.41 0.94 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.40 1.80 9.06 45.56 0.41 2.21 16 37 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -32.78 311.93 -7.12 -39.90 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.79 Total: 1.31 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -2.12 Total: -15.57 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.01 Total: -42.47 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.25 Total: -4.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.78 -7.12 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381301473.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.550 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds