Wall clock time and date at job start Mon Mar 30 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 H 1.09003 * 109.46685 * 305.00467 * 5 4 2 7 7 C 1.52990 * 109.47256 * 185.00181 * 5 4 2 8 8 O 1.42905 * 109.46824 * 64.99898 * 5 4 2 9 9 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 10 10 C 1.38825 * 119.99544 * 274.99906 * 9 2 1 11 11 C 1.39796 * 119.58729 * 359.72509 * 10 9 2 12 12 C 1.38594 * 119.48929 * 179.79326 * 11 10 9 13 13 C 1.38388 * 118.68279 * 0.47637 * 12 11 10 14 14 C 1.40554 * 119.14970 * 359.74580 * 13 12 11 15 15 C 1.41313 * 119.78659 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99617 * 0.02562 * 15 14 13 17 17 C 1.40021 * 119.99894 * 180.02562 * 15 14 13 18 18 N 1.30743 * 120.00333 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99605 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47425 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46761 * 120.00128 * 19 17 15 22 22 H 1.48503 * 109.47135 * 239.99548 * 19 17 15 23 23 N 1.31951 * 119.58069 * 179.97438 * 10 9 2 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 28 28 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 29 29 H 1.08996 * 109.47456 * 60.00105 * 7 5 4 30 30 H 1.08996 * 109.47446 * 180.02562 * 7 5 4 31 31 H 1.09005 * 109.47270 * 300.00259 * 7 5 4 32 32 H 0.96696 * 113.99397 * 60.00262 * 8 5 4 33 33 H 0.96998 * 120.00364 * 94.99433 * 9 2 1 34 34 H 1.08001 * 120.25156 * 359.97438 * 11 10 9 35 35 H 1.08004 * 120.65788 * 180.22411 * 12 11 10 36 36 H 1.07997 * 120.42472 * 179.76957 * 13 12 11 37 37 H 0.96999 * 120.00119 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 8 4.1392 -1.3165 -0.2103 9 7 2.0184 -0.6907 1.1961 10 6 2.1510 0.0019 2.3919 11 6 1.8215 1.3595 2.4435 12 6 1.9505 2.0479 3.6395 13 6 2.4145 1.3668 4.7512 14 6 2.7339 0.0030 4.6346 15 6 3.2083 -0.7057 5.7614 16 1 3.3240 -0.1994 6.7082 17 6 3.5282 -2.0644 5.6501 18 7 3.3886 -2.6772 4.5036 19 14 4.1561 -3.0010 7.1395 20 1 4.2241 -2.0861 8.3071 21 1 3.2324 -4.1234 7.4438 22 1 5.5101 -3.5385 6.8515 23 7 2.5912 -0.6284 3.4644 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.6263 -0.6887 -3.4658 30 1 5.1507 -1.1486 -2.6699 31 1 3.7721 -2.2742 -2.6701 32 1 3.9205 -2.2582 -0.1873 33 1 2.2491 -1.6318 1.1526 34 1 1.4663 1.8672 1.5589 35 1 1.6979 3.0961 3.7016 36 1 2.5294 1.8766 5.6963 37 1 3.6099 -3.6184 4.4267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381409317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:32 Heat of formation + Delta-G solvation = -22.152480 kcal Electronic energy + Delta-G solvation = -18591.583987 eV Core-core repulsion = 15754.487463 eV Total energy + Delta-G solvation = -2837.096524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -38.67016 -37.58080 -35.32431 -33.33902 -31.85252 -30.55005 -29.87546 -27.84484 -26.68759 -25.20733 -21.85381 -21.61994 -20.98735 -19.81006 -17.27237 -16.50622 -15.85827 -15.72500 -14.73091 -14.68523 -14.28027 -14.08444 -13.41953 -13.33784 -12.76775 -12.47585 -12.41778 -12.18594 -11.84599 -11.74948 -11.56022 -11.33639 -11.13162 -10.88663 -10.76870 -10.61210 -10.42057 -10.24900 -9.77518 -9.72641 -9.35308 -8.72347 -7.78102 -7.36461 -6.31086 -6.21203 -4.36019 2.95413 3.17040 3.21714 3.36857 3.41174 4.06142 4.28368 4.57673 4.84331 4.94743 5.04679 5.22623 5.39180 5.48975 5.59614 5.75019 5.82122 5.92110 5.98234 6.06480 6.19110 6.21445 6.28062 6.36726 6.56682 6.75470 6.99430 7.01704 7.09582 7.36796 7.73710 7.94670 7.97357 8.05886 8.29841 8.52752 8.86092 8.93315 9.27498 10.37780 10.53635 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.006691 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.824693 B = 4183.418274 C = 4981.918459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 H 0.073 0.927 4 C -0.158 4.158 5 C 0.103 3.897 6 H 0.093 0.907 7 C -0.185 4.185 8 O -0.541 6.541 9 N -0.717 5.717 10 C 0.421 3.579 11 C -0.370 4.370 12 C -0.033 4.033 13 C -0.322 4.322 14 C 0.294 3.706 15 C -0.437 4.437 16 H 0.081 0.919 17 C 0.072 3.928 18 N -0.714 5.714 19 Si 0.902 3.098 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.275 1.275 23 N -0.530 5.530 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.368 0.632 33 H 0.392 0.608 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.803 0.003 -11.507 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.058 3.942 3 H 0.091 0.909 4 C -0.197 4.197 5 C 0.044 3.956 6 H 0.111 0.889 7 C -0.242 4.242 8 O -0.345 6.345 9 N -0.353 5.353 10 C 0.181 3.819 11 C -0.396 4.396 12 C -0.057 4.057 13 C -0.345 4.345 14 C 0.166 3.834 15 C -0.469 4.469 16 H 0.099 0.901 17 C -0.153 4.153 18 N -0.336 5.336 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.200 1.200 23 N -0.252 5.252 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.228 0.772 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.380 -0.324 -11.623 11.710 hybrid contribution -0.178 -0.346 0.398 0.557 sum -1.558 -0.670 -11.225 11.352 Atomic orbital electron populations 1.22327 0.97072 1.01685 1.01569 1.20561 0.92511 0.96741 0.84412 0.90916 1.22629 0.96876 1.01682 0.98464 1.21840 0.91217 0.97089 0.85496 0.88877 1.22537 1.02031 1.01254 0.98404 1.86809 1.75032 1.24997 1.47615 1.44055 1.73482 1.11929 1.05860 1.18493 0.89060 0.87454 0.86939 1.20627 1.25388 0.95288 0.98308 1.20574 0.95366 0.96788 0.93016 1.21500 1.17837 0.97137 0.98007 1.18205 0.87144 0.88032 0.89983 1.19582 1.37452 0.93985 0.95900 0.90064 1.26024 0.94498 0.98256 0.96486 1.70179 1.30135 1.09605 1.23660 0.86370 0.78861 0.79766 0.82321 1.18532 1.20069 1.20026 1.68223 1.23307 1.36057 0.97576 0.91898 0.93015 0.92969 0.91405 0.90451 0.92043 0.92052 0.92576 0.78557 0.77224 0.89325 0.89250 0.88975 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.41 37.16 0.35 -2.05 16 2 C 0.17 2.56 2.26 -67.93 -0.15 2.40 16 3 H 0.07 1.21 6.42 -51.93 -0.33 0.88 16 4 C -0.16 -1.86 4.53 -26.73 -0.12 -1.98 16 5 C 0.10 1.31 3.59 -26.73 -0.10 1.21 16 6 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.18 -1.82 9.53 37.15 0.35 -1.47 16 8 O -0.54 -8.67 11.26 -35.23 -0.40 -9.07 16 9 N -0.72 -14.32 4.03 -53.90 -0.22 -14.54 16 10 C 0.42 10.50 7.63 -155.32 -1.18 9.32 16 11 C -0.37 -8.83 8.85 -38.87 -0.34 -9.17 16 12 C -0.03 -0.80 10.15 -39.39 -0.40 -1.20 16 13 C -0.32 -8.49 9.83 -38.65 -0.38 -8.87 16 14 C 0.29 8.47 6.55 -85.00 -0.56 7.91 16 15 C -0.44 -12.24 9.14 -37.75 -0.34 -12.58 16 16 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 17 C 0.07 1.90 5.50 -17.35 -0.10 1.80 16 18 N -0.71 -19.35 11.46 55.55 0.64 -18.71 16 19 Si 0.90 19.25 29.56 -169.99 -5.02 14.22 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 N -0.53 -15.02 7.89 -10.33 -0.08 -15.10 16 24 H 0.06 1.04 7.68 -51.93 -0.40 0.65 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.37 4.83 8.79 45.56 0.40 5.23 16 33 H 0.39 7.84 7.65 -40.82 -0.31 7.53 16 34 H 0.09 1.89 6.06 -52.49 -0.32 1.57 16 35 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 36 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.27 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 306.47 15.07 4.62 4.62 Total: -1.00 -31.46 306.47 -8.17 -39.63 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -4.74 Total: 13.63 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -2.97 Total: -14.68 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.34 Total: -48.35 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.40 Total: -9.07 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.46 -8.17 -39.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381409317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.479 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds