Wall clock time and date at job start Mon Mar 30 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 H 1.09003 * 109.46685 * 305.00467 * 5 4 2 7 7 C 1.52990 * 109.47256 * 185.00181 * 5 4 2 8 8 O 1.42905 * 109.46824 * 64.99898 * 5 4 2 9 9 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 10 10 C 1.38825 * 119.99544 * 274.99906 * 9 2 1 11 11 C 1.39796 * 119.58729 * 359.72509 * 10 9 2 12 12 C 1.38594 * 119.48929 * 179.79326 * 11 10 9 13 13 C 1.38388 * 118.68279 * 0.47637 * 12 11 10 14 14 C 1.40554 * 119.14970 * 359.74580 * 13 12 11 15 15 C 1.41313 * 119.78659 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99617 * 0.02562 * 15 14 13 17 17 C 1.40021 * 119.99894 * 180.02562 * 15 14 13 18 18 N 1.30743 * 120.00333 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99605 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47425 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46761 * 120.00128 * 19 17 15 22 22 H 1.48503 * 109.47135 * 239.99548 * 19 17 15 23 23 N 1.31951 * 119.58069 * 179.97438 * 10 9 2 24 24 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 28 28 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 29 29 H 1.08996 * 109.47456 * 60.00105 * 7 5 4 30 30 H 1.08996 * 109.47446 * 180.02562 * 7 5 4 31 31 H 1.09005 * 109.47270 * 300.00259 * 7 5 4 32 32 H 0.96696 * 113.99397 * 60.00262 * 8 5 4 33 33 H 0.96998 * 120.00364 * 94.99433 * 9 2 1 34 34 H 1.08001 * 120.25156 * 359.97438 * 11 10 9 35 35 H 1.08004 * 120.65788 * 180.22411 * 12 11 10 36 36 H 1.07997 * 120.42472 * 179.76957 * 13 12 11 37 37 H 0.96999 * 120.00119 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 8 4.1392 -1.3165 -0.2103 9 7 2.0184 -0.6907 1.1961 10 6 2.1510 0.0019 2.3919 11 6 1.8215 1.3595 2.4435 12 6 1.9505 2.0479 3.6395 13 6 2.4145 1.3668 4.7512 14 6 2.7339 0.0030 4.6346 15 6 3.2083 -0.7057 5.7614 16 1 3.3240 -0.1994 6.7082 17 6 3.5282 -2.0644 5.6501 18 7 3.3886 -2.6772 4.5036 19 14 4.1561 -3.0010 7.1395 20 1 4.2241 -2.0861 8.3071 21 1 3.2324 -4.1234 7.4438 22 1 5.5101 -3.5385 6.8515 23 7 2.5912 -0.6284 3.4644 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7715 -1.2056 28 1 1.6053 -0.2617 -2.1370 29 1 3.6263 -0.6887 -3.4658 30 1 5.1507 -1.1486 -2.6699 31 1 3.7721 -2.2742 -2.6701 32 1 3.9205 -2.2582 -0.1873 33 1 2.2491 -1.6318 1.1526 34 1 1.4663 1.8672 1.5589 35 1 1.6979 3.0961 3.7016 36 1 2.5294 1.8766 5.6963 37 1 3.6099 -3.6184 4.4267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381409317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:32 Heat of formation + Delta-G solvation = -43.176783 kcal Electronic energy + Delta-G solvation = -18592.495669 eV Core-core repulsion = 15754.487463 eV Total energy + Delta-G solvation = -2838.008206 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27580 -39.03677 -36.78045 -35.22680 -33.30311 -32.18632 -31.46231 -29.57727 -27.75974 -27.09448 -23.46716 -23.16084 -22.38200 -21.40238 -19.19096 -18.09283 -17.21105 -16.99972 -16.44361 -16.34261 -15.74455 -15.40332 -15.08192 -14.80240 -14.38145 -14.04917 -13.60916 -13.51819 -13.31689 -12.97838 -12.85332 -12.70068 -12.57496 -12.53473 -12.50488 -12.07547 -11.83995 -11.64342 -11.56617 -11.26544 -10.84450 -10.44895 -9.76443 -9.35955 -8.17048 -8.11690 -6.42905 1.11363 1.41850 1.42226 1.57301 1.60155 2.27514 2.79737 2.97947 3.53889 3.85070 4.01063 4.15192 4.22155 4.35687 4.43858 4.52708 4.61820 4.72196 4.75505 4.89842 4.96352 4.98165 5.03295 5.04731 5.10760 5.21861 5.27803 5.32930 5.44298 5.47246 5.78636 6.02252 6.15505 6.28820 6.67340 6.91799 6.96082 7.08720 7.35910 8.43438 8.57897 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.006691 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.824693 B = 4183.418274 C = 4981.918459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.157 3.843 3 H 0.062 0.938 4 C -0.145 4.145 5 C 0.098 3.902 6 H 0.078 0.922 7 C -0.174 4.174 8 O -0.575 6.575 9 N -0.708 5.708 10 C 0.405 3.595 11 C -0.372 4.372 12 C -0.032 4.032 13 C -0.353 4.353 14 C 0.259 3.741 15 C -0.475 4.475 16 H 0.082 0.918 17 C 0.026 3.974 18 N -0.747 5.747 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.266 1.266 22 H -0.267 1.267 23 N -0.563 5.563 24 H 0.034 0.966 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.377 0.623 33 H 0.391 0.609 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -0.327 -13.080 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.080 0.920 4 C -0.183 4.183 5 C 0.039 3.961 6 H 0.096 0.904 7 C -0.232 4.232 8 O -0.382 6.382 9 N -0.342 5.342 10 C 0.164 3.836 11 C -0.397 4.397 12 C -0.057 4.057 13 C -0.376 4.376 14 C 0.132 3.868 15 C -0.507 4.507 16 H 0.100 0.900 17 C -0.196 4.196 18 N -0.369 5.369 19 Si 0.805 3.195 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.192 1.192 23 N -0.286 5.286 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.130 0.870 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.225 0.775 33 H 0.225 0.775 34 H 0.133 0.867 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.883 -0.640 -13.257 13.406 hybrid contribution -0.079 -0.169 0.733 0.756 sum -1.962 -0.809 -12.524 12.703 Atomic orbital electron populations 1.22245 0.95734 1.01986 1.01935 1.20891 0.93444 0.96331 0.84176 0.91992 1.22551 0.96049 1.02129 0.97527 1.21967 0.91860 0.96276 0.86020 0.90397 1.22417 1.01551 1.01971 0.97238 1.86766 1.75907 1.26003 1.49491 1.44257 1.72491 1.11843 1.05659 1.18967 0.88469 0.88469 0.87728 1.20966 1.24452 0.95103 0.99211 1.20977 0.93934 0.98414 0.92341 1.21643 1.19822 0.96890 0.99278 1.18690 0.87950 0.89375 0.90791 1.19918 1.39212 0.95489 0.96070 0.89979 1.26924 0.94214 0.98548 0.99891 1.70266 1.30540 1.10279 1.25820 0.85135 0.78358 0.78063 0.77915 1.18123 1.19029 1.19202 1.68211 1.24880 1.37170 0.98359 0.94646 0.89473 0.92715 0.90333 0.87039 0.89901 0.92871 0.91483 0.77542 0.77453 0.86694 0.85778 0.88447 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.41 71.98 0.68 -3.53 16 2 C 0.16 4.59 2.26 44.99 0.10 4.69 16 3 H 0.06 1.96 6.42 -2.39 -0.02 1.94 16 4 C -0.14 -2.98 4.53 30.60 0.14 -2.84 16 5 C 0.10 2.31 3.59 30.59 0.11 2.42 16 6 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 7 C -0.17 -2.99 9.53 71.98 0.69 -2.31 16 8 O -0.58 -18.40 11.26 -148.98 -1.68 -20.08 16 9 N -0.71 -28.19 4.03 -324.45 -1.31 -29.50 16 10 C 0.41 20.53 7.63 133.42 1.02 21.55 16 11 C -0.37 -17.62 8.85 22.73 0.20 -17.42 16 12 C -0.03 -1.56 10.15 22.39 0.23 -1.34 16 13 C -0.35 -19.17 9.83 22.87 0.22 -18.95 16 14 C 0.26 15.54 6.55 40.18 0.26 15.80 16 15 C -0.47 -27.58 9.14 23.46 0.21 -27.37 16 16 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 17 C 0.03 1.39 5.50 85.29 0.47 1.86 16 18 N -0.75 -41.47 11.46 21.84 0.25 -41.22 16 19 Si 0.98 40.06 29.56 68.60 2.03 42.09 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 N -0.56 -32.97 7.89 -186.59 -1.47 -34.44 16 24 H 0.03 1.12 7.68 -2.39 -0.02 1.10 16 25 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.38 9.88 8.79 -74.06 -0.65 9.23 16 33 H 0.39 15.72 7.65 -92.71 -0.71 15.01 16 34 H 0.12 4.73 6.06 -2.91 -0.02 4.71 16 35 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 36 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.27 13.70 8.29 -92.71 -0.77 12.93 16 Total: -1.00 -70.71 306.47 1.87 -68.84 By element: Atomic # 1 Polarization: 42.02 SS G_CDS: -0.29 Total: 41.73 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 4.33 Total: -27.42 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -2.53 Total: -105.16 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.68 Total: -20.08 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -70.71 1.87 -68.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381409317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.667 kcal (2) G-P(sol) polarization free energy of solvation -70.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds