Wall clock time and date at job start Mon Mar 30 2020 18:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99843 * 2 1 4 4 H 1.09002 * 109.46862 * 30.00144 * 3 2 1 5 5 C 1.52996 * 109.47042 * 270.00101 * 3 2 1 6 6 C 1.53001 * 109.46892 * 150.00070 * 3 2 1 7 7 H 1.09009 * 109.46793 * 184.99876 * 6 3 2 8 8 C 1.52999 * 109.47398 * 304.99650 * 6 3 2 9 9 N 1.46502 * 109.47154 * 65.00194 * 6 3 2 10 10 C 1.38820 * 120.00010 * 154.99784 * 9 6 3 11 11 C 1.39803 * 119.58295 * 359.97438 * 10 9 6 12 12 C 1.38598 * 119.48881 * 179.97438 * 11 10 9 13 13 C 1.38393 * 118.67941 * 0.25920 * 12 11 10 14 14 C 1.40547 * 119.14706 * 359.47912 * 13 12 11 15 15 C 1.41324 * 119.78258 * 180.25227 * 14 13 12 16 16 H 1.08001 * 119.99729 * 0.27110 * 15 14 13 17 17 C 1.40017 * 120.00293 * 180.27361 * 15 14 13 18 18 N 1.30750 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47382 * 89.99712 * 19 17 15 21 21 H 1.48501 * 109.47313 * 210.00151 * 19 17 15 22 22 H 1.48508 * 109.47126 * 329.99826 * 19 17 15 23 23 N 1.31950 * 119.58604 * 179.97438 * 10 9 6 24 24 H 1.08991 * 109.47013 * 59.99890 * 1 2 3 25 25 H 1.08998 * 109.46522 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46891 * 299.99526 * 1 2 3 27 27 H 1.09002 * 109.47327 * 299.99758 * 5 3 2 28 28 H 1.09005 * 109.47292 * 59.99904 * 5 3 2 29 29 H 1.09000 * 109.47246 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47341 * 179.97438 * 8 6 3 31 31 H 1.09003 * 109.47028 * 300.00728 * 8 6 3 32 32 H 1.09003 * 109.46543 * 60.00190 * 8 6 3 33 33 H 0.96996 * 119.99993 * 334.99727 * 9 6 3 34 34 H 1.08000 * 120.25538 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.65587 * 179.97438 * 12 11 10 36 36 H 1.07994 * 120.42073 * 179.74187 * 13 12 11 37 37 H 0.96995 * 120.00538 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3589 1.2633 0.7212 7 1 3.7609 2.2736 0.7994 8 6 3.1697 0.6798 2.1229 9 7 4.2913 0.4240 -0.0354 10 6 5.6598 0.6222 0.0871 11 6 6.1387 1.6256 0.9347 12 6 7.5054 1.8214 1.0560 13 6 8.3594 1.0148 0.3244 14 6 7.8169 0.0194 -0.5064 15 6 8.6768 -0.8154 -1.2553 16 1 9.7472 -0.6902 -1.1847 17 6 8.1411 -1.8047 -2.0888 18 7 6.8453 -1.9566 -2.1740 19 14 9.2777 -2.9077 -3.0793 20 1 9.6164 -4.1135 -2.2815 21 1 8.5985 -3.3191 -4.3342 22 1 10.5219 -2.1672 -3.4097 23 7 6.4922 -0.1388 -0.5978 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 2.8830 1.0776 -1.9563 28 1 1.2568 1.8015 -1.9563 29 1 2.6605 2.7674 -1.4425 30 1 4.1306 0.6493 2.6366 31 1 2.4760 1.3043 2.6858 32 1 2.7678 -0.3303 2.0446 33 1 3.9524 -0.2702 -0.6220 34 1 5.4490 2.2428 1.4913 35 1 7.8959 2.5913 1.7049 36 1 9.4291 1.1457 0.3943 37 1 6.4741 -2.6422 -2.7511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381458495.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:38 Heat of formation + Delta-G solvation = -11.259624 kcal Electronic energy + Delta-G solvation = -18512.720848 eV Core-core repulsion = 15676.096674 eV Total energy + Delta-G solvation = -2836.624174 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -38.93749 -37.85234 -35.36204 -33.33774 -31.41917 -30.28000 -29.46655 -27.89950 -26.64332 -25.28922 -23.35575 -21.53142 -21.10048 -19.66802 -17.37435 -16.71301 -16.23029 -15.23830 -15.05611 -14.70970 -14.47468 -14.03069 -13.51657 -13.27422 -13.07827 -12.56247 -12.44256 -12.36727 -11.84574 -11.76602 -11.56789 -11.39896 -11.13757 -10.92692 -10.85034 -10.61115 -10.43740 -10.31485 -9.83237 -9.54106 -9.40649 -8.80026 -7.83613 -7.41678 -6.39319 -6.24721 -4.40225 2.93901 3.15478 3.18728 3.31627 3.36642 3.81543 4.03968 4.33092 4.89179 4.91254 5.15435 5.21308 5.34260 5.36732 5.61963 5.66206 5.82356 5.86000 5.92796 6.06497 6.16272 6.22323 6.31825 6.44385 6.60689 6.74886 6.94462 6.97059 7.02682 7.27169 7.34099 7.68665 7.89764 8.00899 8.25716 8.47175 8.81950 8.88841 9.22176 10.33428 10.48914 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.006287 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.932774 B = 4452.460052 C = 5294.820492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.080 3.920 4 H 0.065 0.935 5 C -0.172 4.172 6 C 0.167 3.833 7 H 0.084 0.916 8 C -0.164 4.164 9 N -0.725 5.725 10 C 0.415 3.585 11 C -0.370 4.370 12 C -0.032 4.032 13 C -0.320 4.320 14 C 0.293 3.707 15 C -0.436 4.436 16 H 0.082 0.918 17 C 0.071 3.929 18 N -0.714 5.714 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 N -0.532 5.532 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.400 0.600 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 4.196 2.596 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C 0.022 3.978 4 H 0.083 0.917 5 C -0.229 4.229 6 C 0.059 3.941 7 H 0.101 0.899 8 C -0.223 4.223 9 N -0.361 5.361 10 C 0.174 3.826 11 C -0.396 4.396 12 C -0.056 4.056 13 C -0.343 4.343 14 C 0.166 3.834 15 C -0.468 4.468 16 H 0.100 0.900 17 C -0.154 4.154 18 N -0.336 5.336 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 N -0.253 5.253 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.144 3.407 2.061 11.834 hybrid contribution 0.426 0.183 -0.043 0.465 sum -10.719 3.590 2.019 11.483 Atomic orbital electron populations 1.22738 0.81849 1.02432 0.99442 1.87993 1.18881 1.27582 1.94988 1.22484 0.94483 0.84700 0.96161 0.91737 1.22224 1.01800 1.02298 0.96626 1.20792 0.87021 0.95517 0.90723 0.89855 1.22219 1.01722 1.01695 0.96636 1.44140 1.01728 1.39722 1.50550 1.18549 0.84956 0.89442 0.89606 1.20623 0.95206 1.09232 1.14557 1.20583 0.93140 0.96129 0.95789 1.21511 0.97965 1.05456 1.09333 1.18197 0.87819 0.88935 0.88433 1.19566 0.93917 1.12700 1.20602 0.90010 1.26040 0.95212 0.97505 0.96609 1.70158 1.11665 1.24836 1.26924 0.86403 0.81060 0.80473 0.79257 1.19559 1.20303 1.18657 1.68228 1.02923 1.27780 1.26411 0.94415 0.89927 0.94406 0.90673 0.93121 0.91690 0.91985 0.93300 0.91864 0.76457 0.89187 0.89121 0.88874 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.82 101.05 1.09 1.43 16 2 O -0.38 -5.40 9.20 -35.23 -0.32 -5.72 16 3 C 0.08 1.08 2.52 -26.73 -0.07 1.02 16 4 H 0.06 0.72 7.79 -51.93 -0.40 0.32 16 5 C -0.17 -2.35 9.31 37.16 0.35 -2.00 16 6 C 0.17 2.71 2.16 -67.93 -0.15 2.56 16 7 H 0.08 1.35 6.43 -51.92 -0.33 1.01 16 8 C -0.16 -2.51 9.20 37.16 0.34 -2.17 16 9 N -0.72 -15.02 4.47 -53.90 -0.24 -15.26 16 10 C 0.41 10.30 7.63 -155.33 -1.18 9.12 16 11 C -0.37 -8.64 8.84 -38.86 -0.34 -8.99 16 12 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 13 C -0.32 -8.28 9.83 -38.65 -0.38 -8.66 16 14 C 0.29 8.36 6.55 -85.00 -0.56 7.80 16 15 C -0.44 -12.08 9.14 -37.74 -0.34 -12.43 16 16 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 17 C 0.07 1.87 5.50 -17.35 -0.10 1.78 16 18 N -0.71 -19.48 11.46 55.55 0.64 -18.84 16 19 Si 0.90 19.17 29.56 -169.99 -5.02 14.15 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 23 N -0.53 -15.04 7.89 -10.33 -0.08 -15.12 16 24 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.07 1.23 7.13 -51.93 -0.37 0.86 16 28 H 0.05 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.06 7.65 -51.93 -0.40 0.66 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.02 7.56 -51.93 -0.39 0.63 16 33 H 0.40 8.71 7.98 -40.82 -0.33 8.38 16 34 H 0.09 1.86 6.04 -52.49 -0.32 1.54 16 35 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -30.28 306.62 -7.59 -37.87 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.44 Total: 10.02 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.74 Total: -11.71 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.31 Total: -49.22 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.32 Total: -5.72 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.28 -7.59 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381458495.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.607 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds