Wall clock time and date at job start Mon Mar 30 2020 18:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00167 * 2 1 4 4 H 1.09009 * 109.46937 * 329.99459 * 3 2 1 5 5 C 1.52999 * 109.47483 * 89.99372 * 3 2 1 6 6 C 1.53001 * 109.47157 * 209.99953 * 3 2 1 7 7 H 1.09009 * 109.46793 * 299.99594 * 6 3 2 8 8 C 1.52999 * 109.47398 * 59.99368 * 6 3 2 9 9 N 1.46502 * 109.47154 * 179.97438 * 6 3 2 10 10 C 1.38820 * 120.00010 * 154.99784 * 9 6 3 11 11 C 1.39803 * 119.58295 * 359.97438 * 10 9 6 12 12 C 1.38598 * 119.48881 * 179.97438 * 11 10 9 13 13 C 1.38393 * 118.67941 * 0.25920 * 12 11 10 14 14 C 1.40547 * 119.14706 * 359.47912 * 13 12 11 15 15 C 1.41324 * 119.78258 * 180.25227 * 14 13 12 16 16 H 1.08001 * 119.99729 * 0.27110 * 15 14 13 17 17 C 1.40017 * 120.00293 * 180.27361 * 15 14 13 18 18 N 1.30750 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47152 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47083 * 119.99825 * 19 17 15 22 22 H 1.48502 * 109.47241 * 240.00067 * 19 17 15 23 23 N 1.31950 * 119.58604 * 179.97438 * 10 9 6 24 24 H 1.08998 * 109.47406 * 300.00357 * 1 2 3 25 25 H 1.09000 * 109.46845 * 60.00530 * 1 2 3 26 26 H 1.08996 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47045 * 179.97438 * 5 3 2 28 28 H 1.08999 * 109.47341 * 300.00567 * 5 3 2 29 29 H 1.09003 * 109.46543 * 60.00244 * 5 3 2 30 30 H 1.08999 * 109.47341 * 179.97438 * 8 6 3 31 31 H 1.09003 * 109.47028 * 300.00728 * 8 6 3 32 32 H 1.09003 * 109.46543 * 60.00190 * 8 6 3 33 33 H 0.96996 * 119.99993 * 334.99727 * 9 6 3 34 34 H 1.08000 * 120.25538 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.65587 * 179.97438 * 12 11 10 36 36 H 1.07994 * 120.42073 * 179.74187 * 13 12 11 37 37 H 0.96995 * 120.00538 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 1 4.0242 0.5692 -0.2073 8 6 3.1516 0.7971 -2.1637 9 7 3.9546 2.6016 -0.7218 10 6 5.3309 2.7488 -0.8266 11 6 6.1405 1.6138 -0.9306 12 6 7.5144 1.7630 -1.0357 13 6 8.0462 3.0407 -1.0288 14 6 7.1794 4.1424 -0.9271 15 6 7.7075 5.4532 -0.9242 16 1 8.7736 5.6059 -1.0044 17 6 6.8486 6.5538 -0.8174 18 7 5.5579 6.3690 -0.7208 19 14 7.5468 8.2864 -0.8128 20 1 9.0257 8.2245 -0.9324 21 1 6.9885 9.0481 -1.9589 22 1 7.1813 8.9641 0.4570 23 7 5.8587 3.9582 -0.8267 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.6613 2.7670 1.4424 28 1 1.2568 1.8015 1.9563 29 1 2.8828 1.0775 1.9563 30 1 4.1123 0.7675 -2.6776 31 1 2.7082 -0.1986 -2.1636 32 1 2.4863 1.4910 -2.6776 33 1 3.3872 3.3850 -0.6489 34 1 5.6986 0.6283 -0.9300 35 1 8.1576 0.8992 -1.1166 36 1 9.1131 3.1893 -1.1049 37 1 4.9629 7.1314 -0.6471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381458496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:43 Heat of formation + Delta-G solvation = -11.988264 kcal Electronic energy + Delta-G solvation = -18371.934366 eV Core-core repulsion = 15535.278596 eV Total energy + Delta-G solvation = -2836.655770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -38.93777 -37.94142 -35.56087 -33.38940 -31.41793 -30.31592 -29.48329 -27.98893 -26.64774 -25.35860 -23.30223 -21.64449 -21.04961 -19.84660 -17.41409 -16.89238 -16.17292 -15.36433 -15.04786 -14.74350 -14.51816 -14.02050 -13.70375 -13.22336 -13.06427 -12.69703 -12.61710 -12.29286 -11.88800 -11.80777 -11.60087 -11.30841 -11.18326 -11.11480 -10.94469 -10.62661 -10.43697 -10.23174 -9.85675 -9.67614 -9.43823 -8.85327 -7.88280 -7.48179 -6.48629 -6.30472 -4.44291 2.88572 3.12791 3.17305 3.27305 3.31900 3.54309 4.00286 4.50438 4.84412 4.86655 5.11312 5.20463 5.29367 5.32533 5.55348 5.67711 5.82290 5.90225 5.95604 6.10716 6.13934 6.19739 6.29139 6.37837 6.58134 6.69208 6.89173 6.93319 6.97740 7.20361 7.27872 7.63756 7.85030 7.96405 8.19599 8.39571 8.70696 8.83307 9.15279 10.27218 10.42998 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.005565 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.380917 B = 5029.983348 C = 5696.731509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.082 3.918 4 H 0.061 0.939 5 C -0.171 4.171 6 C 0.166 3.834 7 H 0.083 0.917 8 C -0.162 4.162 9 N -0.730 5.730 10 C 0.415 3.585 11 C -0.366 4.366 12 C -0.032 4.032 13 C -0.317 4.317 14 C 0.293 3.707 15 C -0.435 4.435 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.717 5.717 19 Si 0.904 3.096 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.275 1.275 23 N -0.531 5.531 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.393 0.607 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -6.514 1.068 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.023 3.977 4 H 0.079 0.921 5 C -0.229 4.229 6 C 0.059 3.941 7 H 0.101 0.899 8 C -0.221 4.221 9 N -0.367 5.367 10 C 0.176 3.824 11 C -0.392 4.392 12 C -0.057 4.057 13 C -0.340 4.340 14 C 0.166 3.834 15 C -0.467 4.467 16 H 0.101 0.899 17 C -0.153 4.153 18 N -0.339 5.339 19 Si 0.728 3.272 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.253 5.253 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.228 0.772 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.500 -6.043 1.158 11.319 hybrid contribution 0.345 0.524 -0.036 0.629 sum -9.156 -5.519 1.122 10.749 Atomic orbital electron populations 1.22751 0.81432 1.02398 0.99838 1.87873 1.19259 1.27657 1.95101 1.22305 0.94905 0.84362 0.96087 0.92082 1.22244 1.01578 1.02866 0.96183 1.20524 0.92259 0.86119 0.95219 0.89885 1.22229 1.02190 1.00672 0.97026 1.44051 1.04036 1.05402 1.83200 1.18447 0.83709 0.90576 0.89700 1.20669 0.94089 0.96396 1.28010 1.20605 0.93985 0.95838 0.95223 1.21527 0.98714 0.93304 1.20471 1.18194 0.86171 0.92564 0.86495 1.19612 0.94521 0.89416 1.43195 0.89900 1.26036 0.94647 1.01040 0.93550 1.70163 1.03161 1.31332 1.29262 0.86339 0.80458 0.81978 0.78397 1.18452 1.19984 1.19988 1.68198 1.13365 1.18634 1.25084 0.94259 0.94140 0.89842 0.90615 0.93063 0.91814 0.91896 0.92034 0.93226 0.77201 0.88941 0.88980 0.88776 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.41 16 2 O -0.38 -5.08 9.67 -35.23 -0.34 -5.42 16 3 C 0.08 1.14 2.35 -26.73 -0.06 1.07 16 4 H 0.06 0.80 7.79 -51.92 -0.40 0.39 16 5 C -0.17 -2.36 9.37 37.16 0.35 -2.01 16 6 C 0.17 2.74 2.05 -67.93 -0.14 2.60 16 7 H 0.08 1.47 6.43 -51.92 -0.33 1.14 16 8 C -0.16 -2.51 9.25 37.16 0.34 -2.17 16 9 N -0.73 -14.55 4.54 -53.90 -0.24 -14.79 16 10 C 0.42 10.14 7.63 -155.33 -1.18 8.95 16 11 C -0.37 -8.53 8.84 -38.86 -0.34 -8.87 16 12 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 13 C -0.32 -8.13 9.83 -38.65 -0.38 -8.51 16 14 C 0.29 8.22 6.55 -85.00 -0.56 7.66 16 15 C -0.44 -11.89 9.14 -37.74 -0.34 -12.24 16 16 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 17 C 0.07 1.85 5.50 -17.35 -0.10 1.76 16 18 N -0.72 -19.10 11.46 55.55 0.64 -18.46 16 19 Si 0.90 18.83 29.56 -169.99 -5.02 13.81 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 N -0.53 -14.70 7.89 -10.33 -0.08 -14.78 16 24 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 25 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.15 7.45 -51.93 -0.39 0.76 16 28 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 31 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.39 7.80 8.51 -40.82 -0.35 7.45 16 34 H 0.09 1.95 6.04 -52.49 -0.32 1.63 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 LS Contribution 307.97 15.07 4.64 4.64 Total: -1.00 -29.55 307.97 -7.62 -37.16 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.48 Total: 9.35 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.72 Total: -11.50 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.31 Total: -48.04 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.34 Total: -5.42 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.55 -7.62 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381458496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.176 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds