Wall clock time and date at job start Mon Mar 30 2020 18:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00167 * 2 1 4 4 H 1.09009 * 109.46937 * 329.99459 * 3 2 1 5 5 C 1.52999 * 109.47483 * 89.99372 * 3 2 1 6 6 C 1.53001 * 109.47157 * 209.99953 * 3 2 1 7 7 H 1.09009 * 109.46793 * 299.99594 * 6 3 2 8 8 C 1.52999 * 109.47398 * 59.99368 * 6 3 2 9 9 N 1.46502 * 109.47154 * 179.97438 * 6 3 2 10 10 C 1.38820 * 120.00010 * 154.99784 * 9 6 3 11 11 C 1.39803 * 119.58295 * 359.97438 * 10 9 6 12 12 C 1.38598 * 119.48881 * 179.97438 * 11 10 9 13 13 C 1.38393 * 118.67941 * 0.25920 * 12 11 10 14 14 C 1.40547 * 119.14706 * 359.47912 * 13 12 11 15 15 C 1.41324 * 119.78258 * 180.25227 * 14 13 12 16 16 H 1.08001 * 119.99729 * 0.27110 * 15 14 13 17 17 C 1.40017 * 120.00293 * 180.27361 * 15 14 13 18 18 N 1.30750 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00323 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47152 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47083 * 119.99825 * 19 17 15 22 22 H 1.48502 * 109.47241 * 240.00067 * 19 17 15 23 23 N 1.31950 * 119.58604 * 179.97438 * 10 9 6 24 24 H 1.08998 * 109.47406 * 300.00357 * 1 2 3 25 25 H 1.09000 * 109.46845 * 60.00530 * 1 2 3 26 26 H 1.08996 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47045 * 179.97438 * 5 3 2 28 28 H 1.08999 * 109.47341 * 300.00567 * 5 3 2 29 29 H 1.09003 * 109.46543 * 60.00244 * 5 3 2 30 30 H 1.08999 * 109.47341 * 179.97438 * 8 6 3 31 31 H 1.09003 * 109.47028 * 300.00728 * 8 6 3 32 32 H 1.09003 * 109.46543 * 60.00190 * 8 6 3 33 33 H 0.96996 * 119.99993 * 334.99727 * 9 6 3 34 34 H 1.08000 * 120.25538 * 0.02562 * 11 10 9 35 35 H 1.08002 * 120.65587 * 179.97438 * 12 11 10 36 36 H 1.07994 * 120.42073 * 179.74187 * 13 12 11 37 37 H 0.96995 * 120.00538 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5140 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2632 -0.7212 7 1 4.0242 0.5692 -0.2073 8 6 3.1516 0.7971 -2.1637 9 7 3.9546 2.6016 -0.7218 10 6 5.3309 2.7488 -0.8266 11 6 6.1405 1.6138 -0.9306 12 6 7.5144 1.7630 -1.0357 13 6 8.0462 3.0407 -1.0288 14 6 7.1794 4.1424 -0.9271 15 6 7.7075 5.4532 -0.9242 16 1 8.7736 5.6059 -1.0044 17 6 6.8486 6.5538 -0.8174 18 7 5.5579 6.3690 -0.7208 19 14 7.5468 8.2864 -0.8128 20 1 9.0257 8.2245 -0.9324 21 1 6.9885 9.0481 -1.9589 22 1 7.1813 8.9641 0.4570 23 7 5.8587 3.9582 -0.8267 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.6613 2.7670 1.4424 28 1 1.2568 1.8015 1.9563 29 1 2.8828 1.0775 1.9563 30 1 4.1123 0.7675 -2.6776 31 1 2.7082 -0.1986 -2.1636 32 1 2.4863 1.4910 -2.6776 33 1 3.3872 3.3850 -0.6489 34 1 5.6986 0.6283 -0.9300 35 1 8.1576 0.8992 -1.1166 36 1 9.1131 3.1893 -1.1049 37 1 4.9629 7.1314 -0.6471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381458496.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:42 Heat of formation + Delta-G solvation = -29.694598 kcal Electronic energy + Delta-G solvation = -18372.702171 eV Core-core repulsion = 15535.278596 eV Total energy + Delta-G solvation = -2837.423574 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.42695 -39.42248 -37.03420 -35.25291 -32.99419 -32.10544 -30.85574 -29.69302 -27.49496 -27.28447 -24.56683 -23.47147 -22.66960 -21.39556 -19.24721 -18.41218 -17.47520 -16.85301 -16.43943 -16.20181 -15.97233 -15.66243 -15.19930 -14.71654 -14.56960 -14.20692 -14.01027 -13.66148 -13.42819 -13.23993 -12.87570 -12.72502 -12.69734 -12.56707 -12.47853 -12.18855 -12.10032 -11.69283 -11.49967 -11.30838 -10.76898 -10.49401 -9.82599 -9.43555 -8.29246 -8.21797 -6.46206 1.06788 1.36100 1.42541 1.57427 1.58211 2.25979 2.29602 2.93792 3.16873 3.69282 3.93969 4.09785 4.10947 4.34809 4.44179 4.53607 4.53966 4.63438 4.72168 4.76245 4.84299 4.88623 4.93787 4.99072 5.02276 5.04228 5.17786 5.23378 5.35270 5.39375 5.73694 5.98342 6.08003 6.23540 6.24335 6.56770 6.84964 6.95244 7.23593 8.35511 8.52590 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.005565 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.380917 B = 5029.983348 C = 5696.731509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.092 3.908 4 H 0.073 0.927 5 C -0.167 4.167 6 C 0.163 3.837 7 H 0.071 0.929 8 C -0.153 4.153 9 N -0.721 5.721 10 C 0.402 3.598 11 C -0.367 4.367 12 C -0.031 4.031 13 C -0.344 4.344 14 C 0.260 3.740 15 C -0.472 4.472 16 H 0.085 0.915 17 C 0.027 3.973 18 N -0.752 5.752 19 Si 0.985 3.015 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.267 1.267 23 N -0.563 5.563 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.392 0.608 34 H 0.115 0.885 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.986 -6.910 1.089 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C 0.034 3.966 4 H 0.091 0.909 5 C -0.225 4.225 6 C 0.057 3.943 7 H 0.089 0.911 8 C -0.212 4.212 9 N -0.357 5.357 10 C 0.162 3.838 11 C -0.392 4.392 12 C -0.055 4.055 13 C -0.367 4.367 14 C 0.133 3.867 15 C -0.504 4.504 16 H 0.103 0.897 17 C -0.194 4.194 18 N -0.374 5.374 19 Si 0.806 3.194 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.192 1.192 23 N -0.286 5.286 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.227 0.773 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.626 -6.487 1.178 12.505 hybrid contribution 0.574 0.483 -0.035 0.751 sum -10.052 -6.004 1.144 11.764 Atomic orbital electron populations 1.23005 0.79362 1.04005 1.00781 1.87847 1.21449 1.26849 1.95174 1.22075 0.93650 0.85251 0.95651 0.90867 1.22192 1.02414 1.01384 0.96489 1.20694 0.93412 0.83907 0.96279 0.91079 1.22133 1.01355 1.01891 0.95837 1.44137 1.02504 1.06936 1.82107 1.18839 0.85527 0.90275 0.89187 1.20977 0.94217 0.97133 1.26906 1.21001 0.94616 0.96244 0.93608 1.21677 0.99007 0.93870 1.22164 1.18666 0.87042 0.93789 0.87246 1.19956 0.95095 0.90380 1.44930 0.89676 1.26926 0.94803 1.05167 0.92530 1.70246 1.04487 1.33056 1.29597 0.85123 0.79678 0.75934 0.78697 1.17982 1.19159 1.19163 1.68178 1.13568 1.20339 1.26504 0.93309 0.93201 0.87995 0.92483 0.90815 0.92816 0.93865 0.90043 0.92707 0.77299 0.86670 0.85500 0.88063 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.82 113.37 1.23 1.63 16 2 O -0.39 -9.53 9.67 -148.98 -1.44 -10.97 16 3 C 0.09 2.40 2.35 30.59 0.07 2.47 16 4 H 0.07 1.74 7.79 -2.38 -0.02 1.72 16 5 C -0.17 -4.42 9.37 71.98 0.67 -3.74 16 6 C 0.16 5.20 2.05 44.99 0.09 5.29 16 7 H 0.07 2.45 6.43 -2.38 -0.02 2.44 16 8 C -0.15 -4.51 9.25 71.98 0.67 -3.84 16 9 N -0.72 -28.77 4.54 -324.44 -1.47 -30.25 16 10 C 0.40 19.87 7.63 133.42 1.02 20.89 16 11 C -0.37 -16.95 8.84 22.73 0.20 -16.75 16 12 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 13 C -0.34 -17.96 9.83 22.87 0.22 -17.73 16 14 C 0.26 15.03 6.55 40.18 0.26 15.29 16 15 C -0.47 -26.52 9.14 23.46 0.21 -26.31 16 16 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 17 C 0.03 1.43 5.50 85.29 0.47 1.90 16 18 N -0.75 -40.82 11.46 21.84 0.25 -40.57 16 19 Si 0.99 38.93 29.56 68.60 2.03 40.95 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 23 N -0.56 -32.02 7.89 -186.59 -1.47 -33.49 16 24 H 0.05 0.72 7.87 -2.39 -0.02 0.70 16 25 H 0.05 0.73 8.08 -2.39 -0.02 0.72 16 26 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.71 7.45 -2.39 -0.02 1.70 16 28 H 0.07 1.59 7.87 -2.39 -0.02 1.57 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.43 7.65 -2.39 -0.02 1.41 16 31 H 0.08 2.07 7.68 -2.39 -0.02 2.05 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.39 15.70 8.51 -92.71 -0.79 14.92 16 34 H 0.12 4.71 6.04 -2.91 -0.02 4.69 16 35 H 0.13 4.89 8.06 -2.91 -0.02 4.86 16 36 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.28 13.46 8.29 -92.71 -0.77 12.69 16 Total: -1.00 -64.69 307.97 3.51 -61.18 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: 0.27 Total: 35.25 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 5.35 Total: -22.10 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -2.70 Total: -104.31 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -1.44 Total: -10.97 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Total: -64.69 3.51 -61.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381458496.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.483 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds