Wall clock time and date at job start Mon Mar 30 2020 18:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35783 * 117.00342 * 2 1 4 4 C 1.38885 * 119.60502 * 179.97438 * 3 2 1 5 5 C 1.38336 * 119.18822 * 179.97438 * 4 3 2 6 6 C 1.39387 * 118.42362 * 0.02562 * 5 4 3 7 7 N 1.39981 * 120.43054 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00300 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47217 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47104 * 55.00421 * 9 8 7 11 11 C 1.52998 * 109.47026 * 294.99617 * 9 8 7 12 12 C 1.53002 * 109.46886 * 174.99768 * 9 8 7 13 13 C 1.50706 * 109.47153 * 184.99546 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.38673 * 119.14130 * 0.25135 * 6 5 4 22 22 N 1.31965 * 120.73168 * 359.45116 * 21 6 5 23 23 H 1.08995 * 109.46575 * 59.99760 * 1 2 3 24 24 H 1.08998 * 109.47287 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46853 * 300.00172 * 1 2 3 26 26 H 1.07997 * 120.40490 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.78979 * 179.97438 * 5 4 3 28 28 H 0.97003 * 119.99783 * 0.02562 * 7 6 5 29 29 H 1.09001 * 109.47299 * 60.00185 * 8 7 6 30 30 H 1.09002 * 109.47069 * 300.00352 * 8 7 6 31 31 H 1.09003 * 109.46843 * 179.97438 * 11 9 8 32 32 H 1.08990 * 109.47503 * 300.00380 * 11 9 8 33 33 H 1.09001 * 109.46970 * 60.00396 * 11 9 8 34 34 H 1.09004 * 109.47178 * 65.00336 * 12 9 8 35 35 H 1.08993 * 109.47411 * 305.00018 * 12 9 8 36 36 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 37 37 H 1.08002 * 119.63354 * 179.75043 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 3.4330 1.2728 0.0005 5 6 4.0521 2.5099 0.0000 6 6 3.2528 3.6519 -0.0005 7 7 3.8351 4.9248 -0.0006 8 6 2.9861 6.1187 -0.0017 9 6 3.8661 7.3703 -0.0021 10 1 4.5575 7.3280 -0.8436 11 6 4.6574 7.4377 1.3056 12 6 2.9839 8.6139 -0.1291 13 6 3.8551 9.8373 -0.2529 14 1 4.9304 9.7377 -0.2425 15 6 3.2794 11.0837 -0.3794 16 7 1.9699 11.2044 -0.3974 17 14 4.3593 12.6001 -0.5336 18 1 3.5031 13.8066 -0.6627 19 1 5.2122 12.7255 0.6757 20 1 5.2212 12.4737 -1.7362 21 6 1.8733 3.5106 0.0048 22 7 1.3180 2.3134 -0.0005 23 1 -0.3632 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.0213 0.3672 0.0005 27 1 5.1292 2.5891 0.0008 28 1 4.8008 5.0164 -0.0006 29 1 2.3561 6.1174 0.8878 30 1 2.3574 6.1166 -0.8921 31 1 5.2847 8.3291 1.3050 32 1 3.9660 7.4800 2.1470 33 1 5.2859 6.5517 1.3960 34 1 2.3541 8.7045 0.7560 35 1 2.3551 8.5244 -1.0148 36 1 1.4091 10.4170 -0.3176 37 1 1.2464 4.3900 0.0085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381595653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:18:52 Heat of formation + Delta-G solvation = -41.530851 kcal Electronic energy + Delta-G solvation = -17525.642926 eV Core-core repulsion = 14687.706093 eV Total energy + Delta-G solvation = -2837.936833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.53029 -39.32193 -38.04788 -35.82250 -34.10543 -33.10603 -30.23756 -28.48744 -27.88757 -27.23988 -25.14812 -24.04702 -23.11276 -21.17694 -19.30246 -18.91841 -18.31807 -17.56281 -16.88738 -16.28557 -15.98847 -15.70603 -15.57181 -15.21028 -14.83786 -14.72761 -14.29973 -14.05364 -13.77048 -13.45621 -13.31202 -12.96508 -12.66426 -12.61105 -12.30154 -12.00519 -11.94391 -11.72808 -11.42149 -11.23759 -10.64214 -10.60297 -10.51698 -10.33492 -8.64313 -8.26387 -6.34232 0.21250 0.48873 1.53618 1.61491 1.80113 2.23595 2.47427 2.59673 2.86129 3.19592 3.46683 3.89565 3.93689 4.05913 4.08980 4.22200 4.27496 4.45739 4.50566 4.65923 4.67113 4.73451 4.77210 4.81411 4.88790 5.01614 5.06913 5.19217 5.29769 5.37935 5.42167 5.59886 6.01497 6.13523 6.22952 6.36441 6.62404 6.73713 6.99005 7.46638 8.76686 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.051449 B = 0.003497 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.101684 B = 8005.723594 C = 8418.710825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.324 6.324 3 C 0.232 3.768 4 C -0.135 4.135 5 C -0.114 4.114 6 C 0.137 3.863 7 N -0.728 5.728 8 C 0.139 3.861 9 C -0.078 4.078 10 H 0.064 0.936 11 C -0.125 4.125 12 C 0.017 3.983 13 C -0.606 4.606 14 H 0.055 0.945 15 C -0.042 4.042 16 N -0.943 5.943 17 Si 1.114 2.886 18 H -0.288 1.288 19 H -0.269 1.269 20 H -0.269 1.269 21 C 0.037 3.963 22 N -0.519 5.519 23 H 0.048 0.952 24 H 0.122 0.878 25 H 0.048 0.952 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.409 0.591 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.069 0.931 34 H -0.010 1.010 35 H -0.013 1.013 36 H 0.255 0.745 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 -20.147 1.521 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.233 6.233 3 C 0.051 3.949 4 C -0.155 4.155 5 C -0.144 4.144 6 C 0.031 3.969 7 N -0.360 5.360 8 C 0.015 3.985 9 C -0.097 4.097 10 H 0.083 0.917 11 C -0.182 4.182 12 C -0.021 4.021 13 C -0.644 4.644 14 H 0.074 0.926 15 C -0.239 4.239 16 N -0.581 5.581 17 Si 0.936 3.064 18 H -0.213 1.213 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.123 4.123 22 N -0.242 5.242 23 H 0.066 0.934 24 H 0.140 0.860 25 H 0.067 0.933 26 H 0.183 0.817 27 H 0.188 0.812 28 H 0.246 0.754 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.009 0.991 35 H 0.005 0.995 36 H 0.065 0.935 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.257 -18.703 1.352 19.032 hybrid contribution 0.326 -1.097 0.114 1.150 sum 3.583 -19.800 1.465 20.175 Atomic orbital electron populations 1.22914 0.76798 1.04178 1.01546 1.86175 1.23479 1.24321 1.89305 1.19939 0.90331 0.84541 1.00081 1.21131 0.91286 0.99804 1.03309 1.21224 1.01393 0.89250 1.02543 1.18868 0.93350 0.86957 0.97728 1.44561 1.08709 1.00986 1.81717 1.21280 0.93248 0.83795 1.00226 1.21073 0.97106 0.92683 0.98820 0.91712 1.21633 0.99457 1.01279 0.95834 1.19145 0.95008 0.93814 0.94120 1.22427 0.94601 0.93749 1.53579 0.92638 1.27343 0.98183 1.05135 0.93255 1.70919 1.05058 1.33067 1.49035 0.82969 0.73549 0.71984 0.77931 1.21334 1.19371 1.19461 1.21941 0.91753 0.93869 1.04736 1.67048 1.41432 0.98834 1.16856 0.93360 0.86025 0.93302 0.81711 0.81236 0.75397 0.92768 0.93278 0.93489 0.94115 0.91211 0.99141 0.99471 0.93536 0.83247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.38 113.37 1.18 1.95 16 2 O -0.32 -7.88 10.48 -91.11 -0.95 -8.84 16 3 C 0.23 6.11 7.49 84.79 0.63 6.75 16 4 C -0.13 -2.82 10.03 22.45 0.23 -2.59 16 5 C -0.11 -2.28 10.04 22.57 0.23 -2.06 16 6 C 0.14 3.42 6.68 38.22 0.26 3.68 16 7 N -0.73 -18.08 5.48 -338.96 -1.86 -19.94 16 8 C 0.14 4.30 4.32 86.38 0.37 4.67 16 9 C -0.08 -2.87 2.37 -10.79 -0.03 -2.89 16 10 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 11 C -0.12 -4.16 8.88 71.98 0.64 -3.52 16 12 C 0.02 0.82 3.76 29.85 0.11 0.93 16 13 C -0.61 -33.15 8.41 25.60 0.22 -32.93 16 14 H 0.06 2.92 7.06 -2.91 -0.02 2.90 16 15 C -0.04 -2.40 5.46 84.65 0.46 -1.94 16 16 N -0.94 -58.17 13.65 21.45 0.29 -57.88 16 17 Si 1.11 49.48 29.90 68.60 2.05 51.53 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 C 0.04 1.05 10.49 84.78 0.89 1.94 16 22 N -0.52 -15.17 9.20 -308.41 -2.84 -18.01 16 23 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 24 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 26 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 27 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.41 8.63 7.68 -92.71 -0.71 7.92 16 29 H 0.05 1.71 7.95 -2.39 -0.02 1.69 16 30 H 0.05 1.59 7.98 -2.39 -0.02 1.57 16 31 H 0.05 1.73 6.95 -2.39 -0.02 1.72 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.80 7.18 -2.39 -0.02 1.78 16 34 H -0.01 -0.51 8.01 -2.39 -0.02 -0.53 16 35 H -0.01 -0.69 8.00 -2.39 -0.02 -0.71 16 36 H 0.26 15.90 7.22 -92.71 -0.67 15.23 16 37 H 0.15 4.26 6.75 -2.91 -0.02 4.24 16 Total: -1.00 -66.75 309.87 2.32 -64.43 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.44 Total: 14.71 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 5.18 Total: -26.01 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -4.40 Total: -95.82 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.95 Total: -8.84 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -66.75 2.32 -64.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381595653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.896 kcal (2) G-P(sol) polarization free energy of solvation -66.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds