Wall clock time and date at job start Mon Mar 30 2020 18:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99734 * 2 1 4 4 H 1.09002 * 109.46842 * 30.00509 * 3 2 1 5 5 C 1.52997 * 109.47321 * 270.00521 * 3 2 1 6 6 C 1.52992 * 109.46831 * 150.00136 * 3 2 1 7 7 C 1.52998 * 109.47705 * 295.00170 * 6 3 2 8 8 N 1.46500 * 109.47694 * 179.97438 * 7 6 3 9 9 C 1.38819 * 120.00249 * 179.97438 * 8 7 6 10 10 C 1.39800 * 119.58536 * 359.72884 * 9 8 7 11 11 C 1.38592 * 119.49120 * 179.76392 * 10 9 8 12 12 C 1.38390 * 118.68018 * 0.49913 * 11 10 9 13 13 C 1.40555 * 119.15052 * 359.74856 * 12 11 10 14 14 C 1.41315 * 119.78337 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00192 * 359.97438 * 14 13 12 16 16 C 1.40021 * 119.99548 * 179.97438 * 14 13 12 17 17 N 1.30745 * 120.00522 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99627 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47123 * 60.00448 * 18 16 14 20 20 H 1.48506 * 109.47210 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47191 * 300.00052 * 18 16 14 22 22 N 1.31951 * 119.58601 * 179.97438 * 9 8 7 23 23 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47044 * 299.99435 * 1 2 3 25 25 H 1.08995 * 109.47735 * 59.99930 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99798 * 5 3 2 27 27 H 1.09001 * 109.46832 * 179.97438 * 5 3 2 28 28 H 1.09004 * 109.47261 * 59.99970 * 5 3 2 29 29 H 1.09001 * 109.47359 * 55.00492 * 6 3 2 30 30 H 1.09002 * 109.46906 * 175.00511 * 6 3 2 31 31 H 1.09001 * 109.46974 * 300.00556 * 7 6 3 32 32 H 1.09000 * 109.46929 * 59.99736 * 7 6 3 33 33 H 0.97003 * 119.99724 * 0.02562 * 8 7 6 34 34 H 1.08003 * 120.25110 * 0.02562 * 10 9 8 35 35 H 1.08003 * 120.65768 * 180.25010 * 11 10 9 36 36 H 1.08000 * 120.42605 * 179.76519 * 12 11 10 37 37 H 0.97003 * 120.00065 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4425 6 6 3.3588 1.2633 0.7212 7 6 3.1384 0.9184 2.1954 8 7 4.4298 0.8774 2.8859 9 6 4.4832 0.5829 4.2414 10 6 3.2987 0.3325 4.9405 11 6 3.3546 0.0338 6.2927 12 6 4.5900 0.0029 6.9155 13 6 5.7447 0.2688 6.1594 14 6 7.0132 0.2403 6.7817 15 1 7.0930 0.0151 7.8349 16 6 8.1664 0.5040 6.0327 17 7 8.0697 0.7771 4.7578 18 14 9.8431 0.4669 6.8554 19 1 10.0857 -0.8832 7.4241 20 1 10.8935 0.7782 5.8528 21 1 9.8831 1.4769 7.9433 22 7 5.6508 0.5476 4.8550 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 2.8828 1.0777 -1.9564 27 1 2.6604 2.7675 -1.4424 28 1 1.2566 1.8016 -1.9563 29 1 3.9931 0.5053 0.2616 30 1 3.8425 2.2371 0.6444 31 1 2.5041 1.6764 2.6550 32 1 2.6546 -0.0553 2.2723 33 1 5.2476 1.0567 2.3959 34 1 2.3477 0.3673 4.4297 35 1 2.4516 -0.1668 6.8502 36 1 4.6660 -0.2230 7.9688 37 1 8.8687 0.9602 4.2390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381757246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:30 Heat of formation + Delta-G solvation = -18.683836 kcal Electronic energy + Delta-G solvation = -17805.928263 eV Core-core repulsion = 14968.982151 eV Total energy + Delta-G solvation = -2836.946112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -38.67533 -38.06324 -35.38295 -33.44632 -32.47630 -30.37699 -29.52180 -27.56825 -26.64988 -25.27862 -23.06907 -21.59918 -20.83496 -20.21617 -17.29859 -16.92940 -16.29492 -15.44407 -15.06390 -14.72059 -14.55350 -14.28844 -14.08085 -13.34519 -13.18769 -12.82446 -12.69497 -12.29520 -12.26663 -11.87242 -11.53203 -11.32696 -11.09779 -11.04493 -10.95986 -10.69088 -10.55570 -10.36446 -9.88263 -9.69199 -9.40598 -8.80505 -7.84423 -7.44488 -6.43090 -6.26853 -4.41770 2.94308 3.13542 3.16426 3.30225 3.36122 3.69155 4.02653 4.21041 4.83589 4.88720 4.90269 5.13844 5.20041 5.26169 5.41419 5.49982 5.56495 5.60787 5.67098 5.93626 6.01002 6.09232 6.21484 6.29567 6.37215 6.65459 6.92948 6.95674 7.01720 7.13899 7.31211 7.66694 7.88267 7.98686 8.22704 8.43905 8.76504 8.86696 9.19106 10.31153 10.46736 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.031479 B = 0.004554 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.268969 B = 6146.453662 C = 6909.185473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.089 3.911 4 H 0.062 0.938 5 C -0.173 4.173 6 C -0.128 4.128 7 C 0.145 3.855 8 N -0.740 5.740 9 C 0.411 3.589 10 C -0.366 4.366 11 C -0.032 4.032 12 C -0.318 4.318 13 C 0.293 3.707 14 C -0.436 4.436 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.717 5.717 18 Si 0.905 3.095 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 N -0.532 5.532 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.394 0.606 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 2.076 -9.962 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.030 3.970 4 H 0.080 0.920 5 C -0.231 4.231 6 C -0.166 4.166 7 C 0.019 3.981 8 N -0.376 5.376 9 C 0.172 3.828 10 C -0.392 4.392 11 C -0.057 4.057 12 C -0.341 4.341 13 C 0.166 3.834 14 C -0.469 4.469 15 H 0.100 0.900 16 C -0.153 4.153 17 N -0.339 5.339 18 Si 0.729 3.271 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.191 1.191 22 N -0.254 5.254 23 H 0.102 0.898 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.333 2.114 -10.622 13.665 hybrid contribution -0.045 0.116 0.591 0.604 sum -8.378 2.230 -10.031 13.258 Atomic orbital electron populations 1.22764 0.81469 1.02633 0.99709 1.87971 1.19309 1.27738 1.95024 1.22072 0.94836 0.84736 0.95313 0.91984 1.22274 1.02157 1.01779 0.96875 1.21883 0.96197 1.03006 0.95478 1.20983 0.86592 1.00565 0.89982 1.44141 1.07012 1.79729 1.06767 1.18534 0.90448 0.89428 0.84439 1.20615 0.96115 1.26601 0.95907 1.20589 0.96087 0.95277 0.93717 1.21523 0.93540 1.19548 0.99487 1.18193 0.92193 0.86433 0.86609 1.19537 0.89753 1.41147 0.96427 0.89979 1.26039 1.00920 0.93657 0.94682 1.70149 1.29668 1.27618 1.06456 0.86445 0.81100 0.79715 0.79803 1.19031 1.20383 1.19051 1.68216 1.21454 1.25154 1.10563 0.89784 0.93949 0.94432 0.91671 0.91509 0.92650 0.90449 0.90144 0.93652 0.92461 0.77113 0.89258 0.89008 0.88764 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.38 -4.84 9.88 -35.23 -0.35 -5.19 16 3 C 0.09 0.99 2.72 -26.74 -0.07 0.92 16 4 H 0.06 0.64 7.79 -51.93 -0.40 0.23 16 5 C -0.17 -1.60 9.53 37.16 0.35 -1.24 16 6 C -0.13 -1.66 5.04 -26.74 -0.13 -1.79 16 7 C 0.14 2.40 4.78 -4.04 -0.02 2.38 16 8 N -0.74 -15.54 5.72 -60.40 -0.35 -15.89 16 9 C 0.41 10.50 7.65 -155.33 -1.19 9.31 16 10 C -0.37 -8.86 9.34 -38.87 -0.36 -9.22 16 11 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.32 -8.32 9.83 -38.65 -0.38 -8.70 16 13 C 0.29 8.41 6.55 -85.00 -0.56 7.85 16 14 C -0.44 -12.13 9.14 -37.74 -0.34 -12.47 16 15 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 16 C 0.07 1.88 5.50 -17.35 -0.10 1.79 16 17 N -0.72 -19.48 11.46 55.55 0.64 -18.84 16 18 Si 0.90 19.08 29.56 -169.99 -5.02 14.05 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 N -0.53 -15.20 7.89 -10.33 -0.08 -15.28 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 25 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.06 1.02 7.61 -51.93 -0.40 0.62 16 33 H 0.39 8.17 8.59 -40.82 -0.35 7.82 16 34 H 0.09 1.94 6.68 -52.48 -0.35 1.59 16 35 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 312.23 15.07 4.71 4.71 Total: -1.00 -31.13 312.23 -8.22 -39.35 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.65 Total: 8.06 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.11 Total: -10.97 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.21 Total: -50.01 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.35 Total: -5.19 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.13 -8.22 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381757246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.669 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds