Wall clock time and date at job start Mon Mar 30 2020 18:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00583 * 2 1 4 4 H 1.48504 * 109.47115 * 240.00003 * 3 2 1 5 5 H 1.48497 * 109.47111 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47515 * 119.99847 * 3 2 1 7 7 C 1.38823 * 119.99158 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99461 * 163.07990 * 7 2 1 9 9 N 1.36930 * 120.00136 * 343.08398 * 7 2 1 10 10 C 1.46923 * 120.63042 * 331.84140 * 9 7 2 11 11 C 1.53198 * 108.77578 * 233.59081 * 10 9 7 12 12 C 1.53043 * 109.30991 * 305.36313 * 11 10 9 13 13 N 1.46906 * 109.45828 * 181.38528 * 12 11 10 14 14 C 1.46895 * 110.99976 * 155.00262 * 13 12 11 15 15 C 1.50697 * 109.47186 * 179.97438 * 14 13 12 16 16 C 1.39874 * 125.89755 * 94.99999 * 15 14 13 17 17 C 1.35314 * 107.91730 * 179.76172 * 16 15 14 18 18 N 1.34945 * 107.74779 * 0.42003 * 17 16 15 19 19 H 0.97002 * 126.03550 * 179.84398 * 18 17 16 20 20 N 1.30832 * 125.89975 * 275.02536 * 15 14 13 21 21 C 1.53039 * 109.53593 * 61.37119 * 12 11 10 22 22 C 1.46927 * 120.63011 * 151.82396 * 9 7 2 23 23 H 0.97006 * 119.99163 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.59025 * 113.80569 * 10 9 7 25 25 H 1.08996 * 109.70696 * 353.44636 * 10 9 7 26 26 H 1.09002 * 109.49554 * 185.41829 * 11 10 9 27 27 H 1.08997 * 109.52366 * 65.33359 * 11 10 9 28 28 H 1.08990 * 109.46269 * 301.35980 * 12 11 10 29 29 H 1.00901 * 110.99740 * 31.04636 * 13 12 11 30 30 H 1.09004 * 109.47092 * 59.99800 * 14 13 12 31 31 H 1.09000 * 109.47322 * 300.00043 * 14 13 12 32 32 H 1.07996 * 126.03942 * 0.02562 * 16 15 14 33 33 H 1.08007 * 126.12802 * 180.26598 * 17 16 15 34 34 H 1.08997 * 109.50496 * 58.58259 * 21 12 11 35 35 H 1.09000 * 109.49890 * 178.68424 * 21 12 11 36 36 H 1.09001 * 109.58799 * 246.19500 * 22 9 7 37 37 H 1.09001 * 109.58430 * 6.48267 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6961 -1.2125 5 1 1.2855 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0101 -1.2023 0.0005 8 1 3.0551 -1.2228 -0.2717 9 7 1.3698 -2.3623 0.3461 10 6 0.2257 -2.3399 1.2677 11 6 0.4969 -3.3190 2.4143 12 6 0.8113 -4.7007 1.8361 13 7 1.0393 -5.6502 2.9337 14 6 0.7590 -7.0271 2.5055 15 6 1.0040 -7.9704 3.6549 16 6 0.0373 -8.4425 4.5488 17 6 0.6512 -9.2675 5.4283 18 7 1.9615 -9.3083 5.1083 19 1 2.6458 -9.8185 5.5692 20 7 2.1578 -8.4887 3.9894 21 6 2.0668 -4.6174 0.9651 22 6 1.8135 -3.6530 -0.1980 23 1 -0.4849 0.8402 -0.0004 24 1 -0.6774 -2.6404 0.7365 25 1 0.0964 -1.3346 1.6686 26 1 -0.3838 -3.3839 3.0532 27 1 1.3464 -2.9678 3.0000 28 1 -0.0287 -5.0407 1.2305 29 1 0.4905 -5.4046 3.7441 30 1 1.4138 -7.2896 1.6746 31 1 -0.2806 -7.1041 2.1871 32 1 -1.0140 -8.1959 4.5363 33 1 0.1777 -9.7964 6.2424 34 1 2.9018 -4.2538 1.5639 35 1 2.3036 -5.6064 0.5725 36 1 1.0398 -4.0606 -0.8487 37 1 2.7329 -3.5132 -0.7664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381812962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:33 Heat of formation + Delta-G solvation = 71.950827 kcal Electronic energy + Delta-G solvation = -18069.131079 eV Core-core repulsion = 15268.407932 eV Total energy + Delta-G solvation = -2800.723147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00131 -39.57733 -36.77853 -34.32162 -32.76975 -31.58578 -30.84233 -30.67969 -27.39152 -25.77104 -23.81409 -22.91683 -22.28565 -20.88968 -20.44220 -18.96991 -18.65757 -16.89998 -16.65282 -16.09733 -15.68840 -15.29559 -15.16844 -14.85391 -14.72458 -14.49588 -14.34687 -13.78947 -13.68586 -13.09859 -13.04837 -12.78027 -12.52197 -12.36182 -12.09486 -11.97847 -11.77153 -11.49986 -11.27131 -11.15075 -10.51890 -10.40146 -9.62781 -9.31702 -8.66498 -7.86156 -5.31091 1.02548 1.47806 1.50466 1.57384 1.81313 2.10210 2.53083 3.25099 3.38275 3.72396 3.76756 4.01561 4.05357 4.17168 4.43094 4.49848 4.55736 4.63606 4.73154 4.76052 4.89868 4.91340 5.00374 5.05538 5.12981 5.16620 5.27508 5.43313 5.54864 5.66277 5.69507 5.76282 6.13699 6.41196 6.48503 6.56116 6.81216 7.16874 7.88113 8.40061 9.20296 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.054196 B = 0.003970 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.517723 B = 7051.563427 C = 7140.286790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.267 4.267 8 H 0.063 0.937 9 N -0.611 5.611 10 C 0.180 3.820 11 C -0.126 4.126 12 C 0.109 3.891 13 N -0.682 5.682 14 C 0.140 3.860 15 C 0.068 3.932 16 C -0.291 4.291 17 C 0.073 3.927 18 N -0.475 5.475 19 H 0.450 0.550 20 N -0.323 5.323 21 C -0.105 4.105 22 C 0.142 3.858 23 H 0.251 0.749 24 H -0.001 1.001 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.345 0.655 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.161 0.839 33 H 0.221 0.779 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.016 0.984 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -18.783 11.344 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.397 4.397 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.054 3.946 11 C -0.165 4.165 12 C 0.000 4.000 13 N -0.315 5.315 14 C 0.009 3.991 15 C -0.099 4.099 16 C -0.320 4.320 17 C -0.075 4.075 18 N -0.185 5.185 19 H 0.296 0.704 20 N -0.148 5.148 21 C -0.145 4.145 22 C 0.016 3.984 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.164 0.836 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.178 0.822 33 H 0.237 0.763 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.034 0.966 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.677 -18.777 10.932 21.738 hybrid contribution -1.151 0.896 0.176 1.469 sum -0.475 -17.881 11.108 21.056 Atomic orbital electron populations 1.70175 1.06585 1.25929 1.55305 1.25788 0.96090 1.01421 1.01159 0.85342 0.77609 0.79217 0.78287 1.20132 1.21758 1.20575 1.19489 0.92815 0.86239 1.41156 0.91905 1.44315 1.36031 1.02326 1.50814 1.20547 0.87778 0.97509 0.88781 1.22160 1.00728 0.95196 0.98447 1.21226 0.96229 0.91033 0.91521 1.60426 1.62415 1.00826 1.07838 1.20231 1.00152 0.85699 0.92982 1.22321 0.91256 0.98036 0.98239 1.21787 1.01804 1.07803 1.00626 1.23246 0.84336 0.99253 1.00667 1.46471 1.09115 1.38421 1.24471 0.70373 1.77291 1.23348 1.11065 1.03102 1.21829 0.97473 0.98528 0.96637 1.21059 0.97245 0.85988 0.94113 0.94044 0.98265 0.92698 0.91050 0.93109 0.94083 0.83593 0.90645 0.91834 0.82166 0.76295 0.93316 0.91266 0.96611 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 11.19 21.66 0.24 -55.83 16 2 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 3 Si 0.97 45.85 29.59 68.60 2.03 47.88 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.27 -15.24 9.58 84.04 0.81 -14.44 16 8 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 9 N -0.61 -31.98 2.99 -699.07 -2.09 -34.07 16 10 C 0.18 8.89 5.30 86.37 0.46 9.35 16 11 C -0.13 -4.84 5.36 30.67 0.16 -4.68 16 12 C 0.11 3.70 2.46 44.94 0.11 3.81 16 13 N -0.68 -19.89 6.30 -495.44 -3.12 -23.01 16 14 C 0.14 3.57 6.04 85.56 0.52 4.09 16 15 C 0.07 1.69 6.73 43.10 0.29 1.98 16 16 C -0.29 -5.39 10.74 21.99 0.24 -5.16 16 17 C 0.07 0.97 11.99 83.54 1.00 1.97 16 18 N -0.48 -8.09 7.36 -57.59 -0.42 -8.52 16 19 H 0.45 4.57 8.96 -213.33 -1.91 2.66 16 20 N -0.32 -8.59 12.70 -47.39 -0.60 -9.19 16 21 C -0.10 -3.87 5.59 30.67 0.17 -3.70 16 22 C 0.14 6.20 6.52 86.36 0.56 6.77 16 23 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 24 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.05 3.06 6.07 -2.39 -0.01 3.04 16 26 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.39 7.80 -2.39 -0.02 1.37 16 29 H 0.35 9.29 8.32 -89.69 -0.75 8.55 16 30 H 0.08 2.05 7.41 -2.39 -0.02 2.04 16 31 H 0.06 1.42 8.06 -2.39 -0.02 1.40 16 32 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 2.25 7.42 -2.39 -0.02 2.23 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 2.26 7.93 -2.39 -0.02 2.25 16 Total: -1.00 -70.76 301.62 -0.81 -71.57 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -1.58 Total: 13.56 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 4.73 Total: -2.40 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -6.00 Total: -130.61 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -70.76 -0.81 -71.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381812962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.524 kcal (2) G-P(sol) polarization free energy of solvation -70.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds