Wall clock time and date at job start Mon Mar 30 2020 18:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00099 * 2 1 4 4 H 1.48504 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47170 * 299.99120 * 3 2 1 6 6 H 1.48500 * 109.47365 * 59.99554 * 3 2 1 7 7 C 1.37877 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00105 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50634 * 299.92262 * 9 7 2 11 11 C 1.53126 * 109.50380 * 59.99644 * 9 7 2 12 12 C 1.53114 * 109.16239 * 177.59650 * 11 9 7 13 13 C 1.53037 * 109.31211 * 302.32855 * 12 11 9 14 14 N 1.46929 * 109.47910 * 59.15772 * 13 12 11 15 15 C 1.46900 * 110.98461 * 174.18240 * 14 13 12 16 16 C 1.53001 * 109.47047 * 294.22754 * 15 14 13 17 17 N 1.46505 * 109.46921 * 180.02562 * 16 15 14 18 18 C 1.34427 * 126.82105 * 125.00580 * 17 16 15 19 19 N 1.30827 * 108.07994 * 179.97438 * 18 17 16 20 20 C 1.33244 * 109.82563 * 359.97438 * 19 18 17 21 21 N 1.30708 * 108.94857 * 359.75600 * 20 19 18 22 22 C 1.46850 * 111.22205 * 298.28247 * 14 13 12 23 23 H 0.97000 * 119.99592 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.51941 * 57.68942 * 11 9 7 25 25 H 1.08997 * 109.57191 * 297.53925 * 11 9 7 26 26 H 1.09002 * 109.50377 * 62.28979 * 12 11 9 27 27 H 1.09003 * 109.50316 * 182.36975 * 12 11 9 28 28 H 1.08994 * 109.46612 * 179.21753 * 13 12 11 29 29 H 1.09007 * 109.46083 * 299.18512 * 13 12 11 30 30 H 1.09001 * 109.47343 * 54.22849 * 15 14 13 31 31 H 1.08999 * 109.47204 * 174.23004 * 15 14 13 32 32 H 1.09001 * 109.47127 * 300.00227 * 16 15 14 33 33 H 1.09000 * 109.47324 * 60.00420 * 16 15 14 34 34 H 1.08007 * 125.95917 * 359.97438 * 18 17 16 35 35 H 1.08001 * 125.52389 * 180.02562 * 20 19 18 36 36 H 1.08997 * 109.46198 * 301.72747 * 22 14 13 37 37 H 1.08999 * 109.45191 * 181.75464 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5579 0.8908 11 6 0.3708 -2.5813 -1.2498 12 6 -0.3449 -3.9347 -1.2725 13 6 0.6946 -5.0575 -1.2405 14 7 1.5110 -4.9348 -0.0251 15 6 2.4284 -6.0741 0.1096 16 6 1.6217 -7.3548 0.3335 17 7 2.5367 -8.4910 0.4685 18 6 2.5923 -9.3637 1.4894 19 7 3.5405 -10.2280 1.2335 20 6 4.1097 -9.9412 0.0634 21 7 3.5255 -8.8888 -0.4461 22 6 2.2448 -3.6629 -0.0038 23 1 -0.4849 0.8401 -0.0004 24 1 0.9923 -2.4828 -2.1398 25 1 -0.3670 -1.7793 -1.2302 26 1 -0.9961 -4.0167 -0.4023 27 1 -0.9405 -4.0161 -2.1818 28 1 0.1873 -6.0222 -1.2426 29 1 1.3367 -4.9831 -2.1182 30 1 3.0215 -6.1726 -0.7996 31 1 3.0908 -5.9088 0.9594 32 1 1.0286 -7.2563 1.2427 33 1 0.9593 -7.5202 -0.5162 34 1 1.9638 -9.3532 2.3677 35 1 4.9193 -10.4918 -0.3924 36 1 2.8797 -3.5952 -0.8872 37 1 2.8634 -3.6157 0.8924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397566573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:19:56 Heat of formation + Delta-G solvation = 69.582657 kcal Electronic energy + Delta-G solvation = -18150.363441 eV Core-core repulsion = 15349.537603 eV Total energy + Delta-G solvation = -2800.825839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.95712 -39.95525 -36.45232 -34.85460 -33.25202 -32.15115 -31.75210 -29.49297 -26.94747 -25.52485 -23.48360 -23.22103 -22.85975 -21.75160 -20.39724 -18.51788 -18.20208 -17.03169 -16.66595 -16.23069 -16.11267 -15.53894 -15.17515 -15.01490 -14.95768 -14.39302 -14.23311 -14.12245 -13.41222 -13.26075 -12.90580 -12.87465 -12.61176 -12.46094 -12.18443 -11.79868 -11.74210 -11.40328 -11.06218 -10.96073 -10.77209 -10.67688 -10.55447 -10.36146 -9.29338 -8.09343 -6.23011 0.72881 1.38605 1.39296 1.41848 1.52320 2.04027 2.41912 2.98890 3.17976 3.55879 3.61119 3.78417 4.06325 4.18315 4.20066 4.30910 4.34645 4.45726 4.58147 4.61604 4.78452 4.82351 4.88931 4.97122 5.08076 5.14722 5.29635 5.39507 5.49447 5.52250 5.63154 5.90971 5.92222 6.07614 6.17198 6.22550 6.42560 6.89111 7.14607 7.44911 8.95249 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.042893 B = 0.004194 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.623197 B = 6673.837482 C = 7029.915855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.048 0.952 9 C 0.053 3.947 10 H 0.004 0.996 11 C -0.106 4.106 12 C -0.110 4.110 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.054 3.946 16 C 0.139 3.861 17 N -0.381 5.381 18 C 0.263 3.737 19 N -0.579 5.579 20 C 0.191 3.809 21 N -0.358 5.358 22 C 0.083 3.917 23 H 0.261 0.739 24 H 0.018 0.982 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.021 0.979 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.260 0.740 35 H 0.239 0.761 36 H 0.011 0.989 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 -16.449 0.873 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.066 0.934 9 C 0.035 3.965 10 H 0.022 0.978 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.067 4.067 14 N -0.260 5.260 15 C -0.075 4.075 16 C 0.017 3.983 17 N -0.172 5.172 18 C -0.033 4.033 19 N -0.307 5.307 20 C -0.111 4.111 21 N -0.186 5.186 22 C -0.045 4.045 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.276 0.724 35 H 0.255 0.745 36 H 0.029 0.971 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.169 -16.211 0.780 16.272 hybrid contribution 0.904 1.431 -0.673 1.822 sum 2.073 -14.780 0.107 14.925 Atomic orbital electron populations 1.70025 1.07017 1.27017 1.51145 1.25668 0.95667 1.02149 0.94765 0.85605 0.79005 0.79959 0.77664 1.19449 1.20633 1.20478 1.21544 0.92904 0.92335 1.50886 0.93371 1.18589 0.92917 0.90930 0.94100 0.97760 1.21484 0.99131 0.96663 0.97180 1.21584 0.97438 0.94371 1.01371 1.22182 0.95128 0.99690 0.89656 1.61947 1.23912 1.01432 1.38693 1.22146 0.94420 0.90158 1.00821 1.21918 0.89150 0.80545 1.06679 1.50628 1.27306 1.24034 1.15215 1.26944 0.96188 0.85632 0.94521 1.70573 1.12545 1.29505 1.18076 1.26554 1.00232 0.93384 0.90976 1.78014 1.05568 1.18016 1.17006 1.21984 0.95415 0.88736 0.98369 0.93016 0.96336 0.92230 0.92218 0.91173 0.88403 0.96114 0.95438 0.91113 0.84275 0.88564 0.72409 0.74483 0.97117 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.22 11.35 21.45 0.24 -51.98 16 2 C 0.02 0.91 5.30 84.65 0.45 1.36 16 3 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 7 C -0.54 -29.70 8.56 25.60 0.22 -29.48 16 8 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 9 C 0.05 2.66 2.26 -11.49 -0.03 2.63 16 10 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 11 C -0.11 -4.97 5.02 30.67 0.15 -4.82 16 12 C -0.11 -3.93 6.09 30.64 0.19 -3.74 16 13 C 0.06 1.86 5.30 86.31 0.46 2.32 16 14 N -0.53 -17.51 4.66 -896.13 -4.17 -21.68 16 15 C 0.05 1.43 5.18 86.30 0.45 1.88 16 16 C 0.14 2.66 6.48 86.38 0.56 3.21 16 17 N -0.38 -8.07 3.69 -352.04 -1.30 -9.37 16 18 C 0.26 4.61 12.63 180.36 2.28 6.89 16 19 N -0.58 -12.83 11.19 -204.00 -2.28 -15.11 16 20 C 0.19 4.17 13.03 180.77 2.36 6.53 16 21 N -0.36 -9.15 12.58 -61.25 -0.77 -9.92 16 22 C 0.08 3.42 4.68 86.33 0.40 3.82 16 23 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 24 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.06 3.16 6.15 -2.39 -0.01 3.15 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.10 2.28 6.22 -2.39 -0.01 2.27 16 29 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.07 1.96 7.99 -2.39 -0.02 1.94 16 32 H 0.14 1.92 8.09 -2.39 -0.02 1.90 16 33 H 0.10 1.75 6.43 -2.39 -0.02 1.73 16 34 H 0.26 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.06 2.38 8.01 -2.39 -0.02 2.36 16 Total: -1.00 -67.30 300.89 2.27 -65.03 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.04 Total: 6.87 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 7.48 Total: -9.39 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -8.28 Total: -108.06 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.30 2.27 -65.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397566573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.616 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds