Wall clock time and date at job start Mon Mar 30 2020 18:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46962 * 2 1 4 4 C 1.35312 * 125.86649 * 124.98344 * 3 2 1 5 5 C 1.35356 * 106.17310 * 180.02562 * 4 3 2 6 6 C 1.50693 * 126.75304 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46941 * 94.99803 * 6 5 4 8 8 C 1.46904 * 110.99969 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47143 * 185.35284 * 8 7 6 10 10 C 1.50697 * 115.55359 * 65.04797 * 9 8 7 11 11 H 1.07995 * 120.00085 * 265.44628 * 10 9 8 12 12 C 1.37878 * 120.00176 * 85.44409 * 10 9 8 13 13 N 1.31518 * 119.99636 * 353.60328 * 12 10 9 14 14 Si 1.86799 * 120.00372 * 173.60047 * 12 10 9 15 15 H 1.48498 * 109.46881 * 59.99884 * 14 12 10 16 16 H 1.48499 * 109.47213 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46843 * 300.00232 * 14 12 10 18 18 C 1.53001 * 117.49984 * 279.37760 * 9 8 7 19 19 C 1.53005 * 117.49728 * 210.71905 * 9 8 7 20 20 N 1.33768 * 106.49548 * 359.97438 * 5 4 3 21 21 N 1.28635 * 108.88757 * 0.02562 * 20 5 4 22 22 H 1.09006 * 109.47159 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47628 * 300.00211 * 1 2 3 24 24 H 1.09001 * 109.46990 * 60.00856 * 1 2 3 25 25 H 1.08993 * 109.47628 * 239.99789 * 2 1 3 26 26 H 1.09009 * 109.47105 * 119.99381 * 2 1 3 27 27 H 1.07998 * 126.91379 * 0.06659 * 4 3 2 28 28 H 1.08996 * 109.47545 * 214.99922 * 6 5 4 29 29 H 1.08998 * 109.47341 * 335.00208 * 6 5 4 30 30 H 1.00897 * 111.00555 * 303.95233 * 7 6 5 31 31 H 1.09003 * 109.47043 * 305.34939 * 8 7 6 32 32 H 1.08997 * 109.47508 * 65.34918 * 8 7 6 33 33 H 0.97005 * 119.99391 * 179.97438 * 13 12 10 34 34 H 1.09007 * 117.49616 * 359.97438 * 18 9 8 35 35 H 1.08996 * 117.50446 * 145.01782 * 18 9 8 36 36 H 1.08997 * 117.49679 * 214.97588 * 19 9 8 37 37 H 1.08999 * 117.50039 * 359.97164 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8752 1.9192 0.8984 5 6 3.0530 3.2080 0.5250 6 6 3.9220 4.2328 1.2073 7 7 5.2376 4.2716 0.5548 8 6 6.1140 5.2614 1.1952 9 6 7.4222 5.3687 0.4092 10 6 7.2960 5.9066 -0.9928 11 1 7.2019 5.2259 -1.8259 12 6 7.3005 7.2679 -1.2119 13 7 7.2879 8.0981 -0.1919 14 14 7.3244 7.9330 -2.9573 15 1 6.1209 7.4564 -3.6851 16 1 7.3263 9.4175 -2.9214 17 1 8.5457 7.4535 -3.6529 18 6 8.4883 4.3009 0.6628 19 6 8.6888 5.7236 1.1907 20 7 2.3064 3.3928 -0.5694 21 7 1.7057 2.2917 -0.8545 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.3271 1.4203 1.7430 28 1 3.4519 5.2135 1.1356 29 1 4.0447 3.9645 2.2566 30 1 5.6665 3.3583 0.5510 31 1 5.6175 6.2317 1.2083 32 1 6.3287 4.9494 2.2173 33 1 7.2915 9.0558 -0.3462 34 1 8.2577 3.5222 1.3899 35 1 9.0985 3.9877 -0.1843 36 1 9.4309 6.3459 0.6906 37 1 8.5900 5.8812 2.2647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404447327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:05 Heat of formation + Delta-G solvation = 124.702914 kcal Electronic energy + Delta-G solvation = -17861.493565 eV Core-core repulsion = 15063.057920 eV Total energy + Delta-G solvation = -2798.435645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.08394 -37.05154 -35.69701 -34.36540 -31.74077 -30.98939 -30.75924 -26.62505 -25.21269 -24.76036 -23.18121 -21.63986 -21.01940 -20.54549 -18.91042 -17.39432 -16.39403 -16.07543 -15.03676 -14.76992 -14.61170 -14.31104 -13.90845 -13.79251 -13.35163 -13.03998 -12.65050 -12.59030 -11.96178 -11.60924 -11.58698 -11.24653 -11.16473 -10.80401 -10.59578 -10.48425 -10.36948 -10.10204 -9.93836 -9.41905 -9.05285 -8.71180 -8.26762 -7.97764 -7.46988 -5.85341 -3.86035 1.70116 2.35527 2.76220 3.46327 3.49179 3.54613 4.17778 4.48921 4.53092 4.58782 4.73720 4.89329 5.08128 5.17004 5.24518 5.33526 5.44938 5.54898 5.57741 5.70941 5.96003 6.12860 6.25393 6.39014 6.39608 6.55042 6.65865 6.69963 6.79203 6.94875 7.18220 7.53866 7.65346 7.99782 8.08428 8.21398 8.65661 8.73221 9.12530 9.77048 11.24667 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.004837 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.951868 B = 5787.019915 C = 6370.828624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.297 5.297 4 C -0.056 4.056 5 C 0.001 3.999 6 C 0.143 3.857 7 N -0.661 5.661 8 C 0.108 3.892 9 C 0.054 3.946 10 C -0.469 4.469 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.887 3.113 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.280 1.280 18 C -0.217 4.217 19 C -0.158 4.158 20 N -0.245 5.245 21 N -0.092 5.092 22 H 0.080 0.920 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.186 0.814 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.329 0.671 31 H 0.079 0.921 32 H -0.005 1.005 33 H 0.257 0.743 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 -16.022 5.922 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.092 5.092 4 C -0.208 4.208 5 C -0.138 4.138 6 C 0.012 3.988 7 N -0.291 5.291 8 C -0.020 4.020 9 C 0.054 3.946 10 C -0.507 4.507 11 H 0.076 0.924 12 C -0.133 4.133 13 N -0.525 5.525 14 Si 0.716 3.284 15 H -0.201 1.201 16 H -0.216 1.216 17 H -0.206 1.206 18 C -0.254 4.254 19 C -0.196 4.196 20 N -0.112 5.112 21 N -0.071 5.071 22 H 0.099 0.901 23 H 0.082 0.918 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.203 0.797 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.013 0.987 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.015 -15.071 4.201 19.134 hybrid contribution 0.895 -0.505 0.939 1.392 sum -10.120 -15.576 5.140 19.273 Atomic orbital electron populations 1.22072 0.92888 1.03446 1.04073 1.22019 0.96760 0.76976 1.05012 1.47402 1.30982 1.11808 1.18981 1.23364 1.01195 0.95889 1.00309 1.22049 1.01469 0.94261 0.96007 1.20117 0.89651 0.96272 0.92779 1.60204 1.01755 1.10560 1.56590 1.21575 0.94182 0.94929 0.91335 1.18798 0.85144 0.95230 0.95473 1.20261 1.49344 0.90868 0.90205 0.92382 1.24912 0.94984 0.97002 0.96436 1.69999 1.50500 1.02341 1.29659 0.86733 0.78591 0.77464 0.85658 1.20106 1.21553 1.20561 1.22991 1.08395 0.91867 1.02145 1.22517 1.04084 0.95878 0.97132 1.75144 1.08026 1.15308 1.12733 1.78275 1.21126 0.93017 1.14706 0.90103 0.91805 0.90617 0.88464 0.87926 0.79742 0.89402 0.94648 0.85438 0.90280 0.98672 0.93334 0.92284 0.90597 0.90076 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.04 37.16 0.37 -0.66 16 2 C 0.11 0.78 7.18 -4.04 -0.03 0.75 16 3 N -0.30 -3.64 3.44 -61.26 -0.21 -3.85 16 4 C -0.06 -0.70 11.50 -17.05 -0.20 -0.90 16 5 C 0.00 0.01 6.76 -82.78 -0.56 -0.55 16 6 C 0.14 2.42 6.24 -4.98 -0.03 2.39 16 7 N -0.66 -13.34 6.37 -115.06 -0.73 -14.07 16 8 C 0.11 2.42 5.51 -3.83 -0.02 2.40 16 9 C 0.05 1.35 1.55 -155.66 -0.24 1.10 16 10 C -0.47 -13.20 8.74 -34.44 -0.30 -13.50 16 11 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 12 C 0.07 1.94 5.39 -17.82 -0.10 1.84 16 13 N -0.89 -25.75 12.92 55.43 0.72 -25.04 16 14 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.22 -4.74 9.96 -26.69 -0.27 -5.00 16 19 C -0.16 -3.74 9.41 -26.69 -0.25 -4.00 16 20 N -0.25 -4.69 12.41 33.29 0.41 -4.28 16 21 N -0.09 -1.51 12.91 60.35 0.78 -0.73 16 22 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.40 8.07 -51.92 -0.42 -0.02 16 27 H 0.19 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.33 6.16 8.78 -39.29 -0.34 5.81 16 31 H 0.08 1.99 8.13 -51.93 -0.42 1.56 16 32 H 0.00 -0.10 8.09 -51.93 -0.42 -0.52 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -33.20 319.82 -6.66 -39.86 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.80 Total: 2.13 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.62 Total: -16.11 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.96 Total: -47.98 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.20 -6.66 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404447327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.563 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds