Wall clock time and date at job start Mon Mar 30 2020 18:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.46962 * 2 1 4 4 C 1.35312 * 125.86649 * 124.98344 * 3 2 1 5 5 C 1.35356 * 106.17310 * 180.02562 * 4 3 2 6 6 C 1.50693 * 126.75304 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46941 * 94.99803 * 6 5 4 8 8 C 1.46904 * 110.99969 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47143 * 185.35284 * 8 7 6 10 10 C 1.50697 * 115.55359 * 65.04797 * 9 8 7 11 11 H 1.07995 * 120.00085 * 265.44628 * 10 9 8 12 12 C 1.37878 * 120.00176 * 85.44409 * 10 9 8 13 13 N 1.31518 * 119.99636 * 353.60328 * 12 10 9 14 14 Si 1.86799 * 120.00372 * 173.60047 * 12 10 9 15 15 H 1.48498 * 109.46881 * 59.99884 * 14 12 10 16 16 H 1.48499 * 109.47213 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46843 * 300.00232 * 14 12 10 18 18 C 1.53001 * 117.49984 * 279.37760 * 9 8 7 19 19 C 1.53005 * 117.49728 * 210.71905 * 9 8 7 20 20 N 1.33768 * 106.49548 * 359.97438 * 5 4 3 21 21 N 1.28635 * 108.88757 * 0.02562 * 20 5 4 22 22 H 1.09006 * 109.47159 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47628 * 300.00211 * 1 2 3 24 24 H 1.09001 * 109.46990 * 60.00856 * 1 2 3 25 25 H 1.08993 * 109.47628 * 239.99789 * 2 1 3 26 26 H 1.09009 * 109.47105 * 119.99381 * 2 1 3 27 27 H 1.07998 * 126.91379 * 0.06659 * 4 3 2 28 28 H 1.08996 * 109.47545 * 214.99922 * 6 5 4 29 29 H 1.08998 * 109.47341 * 335.00208 * 6 5 4 30 30 H 1.00897 * 111.00555 * 303.95233 * 7 6 5 31 31 H 1.09003 * 109.47043 * 305.34939 * 8 7 6 32 32 H 1.08997 * 109.47508 * 65.34918 * 8 7 6 33 33 H 0.97005 * 119.99391 * 179.97438 * 13 12 10 34 34 H 1.09007 * 117.49616 * 359.97438 * 18 9 8 35 35 H 1.08996 * 117.50446 * 145.01782 * 18 9 8 36 36 H 1.08997 * 117.49679 * 214.97588 * 19 9 8 37 37 H 1.08999 * 117.50039 * 359.97164 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8752 1.9192 0.8984 5 6 3.0530 3.2080 0.5250 6 6 3.9220 4.2328 1.2073 7 7 5.2376 4.2716 0.5548 8 6 6.1140 5.2614 1.1952 9 6 7.4222 5.3687 0.4092 10 6 7.2960 5.9066 -0.9928 11 1 7.2019 5.2259 -1.8259 12 6 7.3005 7.2679 -1.2119 13 7 7.2879 8.0981 -0.1919 14 14 7.3244 7.9330 -2.9573 15 1 6.1209 7.4564 -3.6851 16 1 7.3263 9.4175 -2.9214 17 1 8.5457 7.4535 -3.6529 18 6 8.4883 4.3009 0.6628 19 6 8.6888 5.7236 1.1907 20 7 2.3064 3.3928 -0.5694 21 7 1.7057 2.2917 -0.8545 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.3271 1.4203 1.7430 28 1 3.4519 5.2135 1.1356 29 1 4.0447 3.9645 2.2566 30 1 5.6665 3.3583 0.5510 31 1 5.6175 6.2317 1.2083 32 1 6.3287 4.9494 2.2173 33 1 7.2915 9.0558 -0.3462 34 1 8.2577 3.5222 1.3899 35 1 9.0985 3.9877 -0.1843 36 1 9.4309 6.3459 0.6906 37 1 8.5900 5.8812 2.2647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404447327.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:04 Heat of formation + Delta-G solvation = 101.115983 kcal Electronic energy + Delta-G solvation = -17862.516371 eV Core-core repulsion = 15063.057920 eV Total energy + Delta-G solvation = -2799.458451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -44.15392 -38.81233 -36.74904 -35.69462 -33.87223 -32.16798 -31.61762 -28.17454 -27.20562 -25.51181 -24.74576 -22.85628 -22.60053 -21.65656 -20.82607 -18.39333 -17.89898 -17.33225 -16.72593 -16.31840 -15.72583 -15.60535 -15.34781 -15.12023 -14.86732 -14.43735 -13.70221 -13.40651 -13.28346 -13.13111 -12.85999 -12.82675 -12.64960 -12.53706 -12.34794 -12.27002 -11.96390 -11.59941 -11.32946 -10.95488 -10.71069 -10.35374 -10.19106 -9.84400 -8.98030 -8.01915 -6.06649 0.70940 1.41870 1.44654 1.50672 1.52695 1.60059 2.49447 3.28054 3.33456 3.50633 3.70618 3.79196 4.00329 4.06682 4.19439 4.31521 4.41771 4.49091 4.57945 4.69225 4.76064 4.77236 4.79440 4.91367 5.03283 5.04808 5.12555 5.16601 5.29999 5.33845 5.69720 5.78748 5.79404 5.92128 6.38352 6.54566 6.80166 6.96096 7.58052 7.61250 9.06787 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.004837 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.951868 B = 5787.019915 C = 6370.828624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.285 5.285 4 C -0.026 4.026 5 C -0.032 4.032 6 C 0.150 3.850 7 N -0.680 5.680 8 C 0.125 3.875 9 C 0.023 3.977 10 C -0.481 4.481 11 H 0.040 0.960 12 C 0.024 3.976 13 N -0.909 5.909 14 Si 0.938 3.062 15 H -0.283 1.283 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.186 4.186 19 C -0.164 4.164 20 N -0.304 5.304 21 N -0.122 5.122 22 H 0.112 0.888 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.108 0.892 26 H 0.145 0.855 27 H 0.236 0.764 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.339 0.661 31 H 0.040 0.960 32 H 0.021 0.979 33 H 0.256 0.744 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.957 -18.934 7.341 22.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.080 5.080 4 C -0.178 4.178 5 C -0.171 4.171 6 C 0.020 3.980 7 N -0.312 5.312 8 C -0.004 4.004 9 C 0.022 3.978 10 C -0.519 4.519 11 H 0.058 0.942 12 C -0.175 4.175 13 N -0.548 5.548 14 Si 0.765 3.235 15 H -0.209 1.209 16 H -0.209 1.209 17 H -0.198 1.198 18 C -0.223 4.223 19 C -0.202 4.202 20 N -0.171 5.171 21 N -0.101 5.101 22 H 0.130 0.870 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.163 0.837 27 H 0.252 0.748 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.157 0.843 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.028 -18.012 5.595 21.849 hybrid contribution 0.851 0.261 0.515 1.028 sum -10.177 -17.751 6.110 21.354 Atomic orbital electron populations 1.22061 0.92552 1.04984 1.02504 1.22605 0.97125 0.74386 1.07684 1.47894 1.29698 1.12860 1.17542 1.23967 0.99238 0.94315 1.00320 1.22107 1.02517 0.96075 0.96449 1.20006 0.87851 0.95575 0.94582 1.60019 1.02709 1.10661 1.57797 1.21186 0.92909 0.93954 0.92367 1.18898 0.86813 0.97637 0.94445 1.20504 1.48805 0.90887 0.91753 0.94162 1.25510 0.95188 0.97443 0.99378 1.70084 1.51564 1.02264 1.30936 0.85933 0.78305 0.77115 0.82134 1.20893 1.20930 1.19767 1.22976 1.05605 0.91538 1.02192 1.22437 1.02917 0.97181 0.97655 1.75067 1.09916 1.17274 1.14795 1.78169 1.22133 0.93453 1.16335 0.86967 0.92437 0.93119 0.87372 0.83663 0.74753 0.92190 0.90967 0.84280 0.94145 0.96126 0.93533 0.88651 0.91048 0.92714 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.04 71.98 0.72 -0.89 16 2 C 0.10 1.02 7.18 86.38 0.62 1.64 16 3 N -0.29 -6.31 3.44 -347.72 -1.20 -7.50 16 4 C -0.03 -0.55 11.50 83.49 0.96 0.41 16 5 C -0.03 -1.01 6.76 41.60 0.28 -0.73 16 6 C 0.15 4.97 6.24 85.55 0.53 5.50 16 7 N -0.68 -26.91 6.37 -517.94 -3.30 -30.21 16 8 C 0.12 5.51 5.51 86.30 0.48 5.98 16 9 C 0.02 1.12 1.55 -52.93 -0.08 1.04 16 10 C -0.48 -27.52 8.74 25.60 0.22 -27.29 16 11 H 0.04 2.38 7.82 -2.91 -0.02 2.36 16 12 C 0.02 1.38 5.39 84.65 0.46 1.83 16 13 N -0.91 -53.88 12.92 21.45 0.28 -53.60 16 14 Si 0.94 46.68 29.54 68.60 2.03 48.70 16 15 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 16 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 17 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 18 C -0.19 -7.71 9.96 30.62 0.30 -7.41 16 19 C -0.16 -7.63 9.41 30.62 0.29 -7.34 16 20 N -0.30 -11.85 12.41 -48.60 -0.60 -12.46 16 21 N -0.12 -4.00 12.91 37.02 0.48 -3.52 16 22 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 23 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 25 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.15 0.29 8.07 -2.38 -0.02 0.27 16 27 H 0.24 2.40 8.06 -2.91 -0.02 2.37 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.34 11.98 8.78 -89.70 -0.79 11.20 16 31 H 0.04 2.07 8.13 -2.39 -0.02 2.05 16 32 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 34 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 35 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.05 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -75.71 319.82 2.73 -72.98 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.26 Total: 12.88 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 4.78 Total: -27.27 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -4.34 Total: -107.29 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.71 2.73 -72.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404447327.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.095 kcal (2) G-P(sol) polarization free energy of solvation -75.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds