Wall clock time and date at job start Mon Mar 30 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.46866 * 2 1 4 4 C 1.46896 * 110.99972 * 293.95404 * 3 2 1 5 5 C 1.53238 * 109.36517 * 172.73670 * 4 3 2 6 6 N 1.47144 * 108.49008 * 53.81646 * 5 4 3 7 7 C 1.36927 * 120.86804 * 128.81115 * 6 5 4 8 8 H 1.07996 * 120.00376 * 206.58751 * 7 6 5 9 9 C 1.38813 * 120.00132 * 26.59679 * 7 6 5 10 10 N 1.31621 * 119.99888 * 16.99093 * 9 7 6 11 11 Si 1.86797 * 120.00089 * 197.00187 * 9 7 6 12 12 H 1.48502 * 109.47187 * 89.99346 * 11 9 7 13 13 H 1.48505 * 109.47215 * 209.99287 * 11 9 7 14 14 H 1.48496 * 109.47035 * 329.99639 * 11 9 7 15 15 C 1.47085 * 118.24633 * 308.83289 * 6 5 4 16 16 C 1.46904 * 110.99797 * 169.65022 * 3 2 1 17 17 H 1.09001 * 109.49089 * 67.26693 * 16 3 2 18 18 C 1.50693 * 109.49393 * 307.21639 * 16 3 2 19 19 N 1.30505 * 125.65061 * 335.01897 * 18 16 3 20 20 C 1.34128 * 109.25918 * 180.02562 * 19 18 16 21 21 C 1.34677 * 108.01675 * 0.02562 * 20 19 18 22 22 N 1.35047 * 125.65156 * 154.72112 * 18 16 3 23 23 H 0.96996 * 126.39521 * 359.97438 * 22 18 16 24 24 H 1.09001 * 109.46733 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47082 * 299.99684 * 1 2 3 26 26 H 1.08997 * 109.46836 * 60.00116 * 1 2 3 27 27 H 1.08996 * 109.47075 * 239.99759 * 2 1 3 28 28 H 1.08997 * 109.46836 * 119.99884 * 2 1 3 29 29 H 1.09008 * 109.49085 * 292.70704 * 4 3 2 30 30 H 1.09000 * 109.49696 * 52.75823 * 4 3 2 31 31 H 1.08997 * 109.63285 * 173.54986 * 5 4 3 32 32 H 1.09007 * 109.62396 * 294.13374 * 5 4 3 33 33 H 0.96999 * 119.99831 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.63077 * 291.47404 * 15 6 5 35 35 H 1.09000 * 109.78085 * 170.99173 * 15 6 5 36 36 H 1.07995 * 125.99314 * 179.97438 * 20 19 18 37 37 H 1.07996 * 126.58534 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 2.0347 3.5512 -1.1429 6 7 3.4490 3.6564 -0.7504 7 6 4.3167 4.4470 -1.4553 8 1 5.3717 4.2161 -1.4646 9 6 3.8405 5.5453 -2.1580 10 7 2.6454 6.0286 -1.8926 11 14 4.8958 6.3373 -3.4804 12 1 4.6169 5.6921 -4.7886 13 1 4.5788 7.7856 -3.5652 14 1 6.3304 6.1636 -3.1387 15 6 3.9058 2.8897 0.4187 16 6 3.4671 1.4317 0.2464 17 1 3.9944 0.9903 -0.5993 18 6 3.7892 0.6582 1.4989 19 7 2.9663 0.4327 2.4864 20 6 3.5933 -0.2862 3.4294 21 6 4.8527 -0.5145 3.0105 22 7 4.9755 0.0786 1.7829 23 1 5.7675 0.0841 1.2230 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.2226 1.6171 -2.0784 30 1 0.6000 1.9678 -1.4352 31 1 1.8844 4.0379 -2.1066 32 1 1.4088 4.0267 -0.3877 33 1 2.3125 6.7959 -2.3839 34 1 3.4597 3.3017 1.3239 35 1 4.9923 2.9392 0.4907 36 1 3.1637 -0.6223 4.3615 37 1 5.6170 -1.0649 3.5389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408279535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:07 Heat of formation + Delta-G solvation = 101.258860 kcal Electronic energy + Delta-G solvation = -19084.675736 eV Core-core repulsion = 16285.223480 eV Total energy + Delta-G solvation = -2799.452255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87671 -38.19418 -34.70914 -32.38920 -32.02579 -30.93677 -29.64257 -28.02458 -26.08041 -23.39059 -23.11729 -21.28397 -21.02594 -20.42066 -19.05917 -17.72249 -16.63371 -15.35483 -14.95169 -14.66725 -14.44238 -13.89406 -13.77644 -13.51306 -13.35807 -13.20171 -13.14376 -12.46911 -12.01912 -11.46450 -11.34545 -11.08163 -10.93286 -10.80552 -10.39798 -10.32540 -10.06983 -9.86968 -9.73386 -9.61731 -9.54029 -8.54501 -8.16595 -7.70781 -6.69759 -5.79927 -3.22395 2.23234 3.23934 3.36111 3.38894 3.43281 3.44434 4.39900 4.49010 4.73252 5.16586 5.36610 5.41106 5.48212 5.60102 5.65708 5.71658 5.82124 5.87616 5.95184 6.08735 6.25237 6.26615 6.29378 6.41069 6.52168 6.56851 6.70375 6.89378 6.97365 7.25139 7.50108 7.69065 7.69866 7.71008 7.85962 8.39616 8.41543 9.18042 9.80470 10.39308 11.28673 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.006803 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.405489 B = 4114.791948 C = 4854.232958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 N -0.508 5.508 4 C 0.033 3.967 5 C 0.176 3.824 6 N -0.592 5.592 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.900 5.900 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.163 3.837 16 C 0.155 3.845 17 H 0.047 0.953 18 C 0.229 3.771 19 N -0.464 5.464 20 C -0.034 4.034 21 C -0.070 4.070 22 N -0.569 5.569 23 H 0.417 0.583 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.013 0.987 28 H 0.083 0.917 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.030 0.970 33 H 0.255 0.745 34 H 0.034 0.966 35 H 0.052 0.948 36 H 0.165 0.835 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 -13.349 5.052 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 N -0.234 5.234 4 C -0.095 4.095 5 C 0.050 3.950 6 N -0.315 5.315 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.544 5.544 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.217 1.217 14 H -0.205 1.205 15 C 0.035 3.965 16 C 0.043 3.957 17 H 0.065 0.935 18 C -0.036 4.036 19 N -0.183 5.183 20 C -0.183 4.183 21 C -0.203 4.203 22 N -0.172 5.172 23 H 0.254 0.746 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.183 0.817 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.832 -12.663 5.431 13.803 hybrid contribution 2.218 -0.388 -1.488 2.699 sum 3.049 -13.050 3.943 13.970 Atomic orbital electron populations 1.21716 0.95300 1.00403 1.02430 1.22192 0.96034 0.89871 1.00052 1.61747 1.11166 1.14774 1.35690 1.23000 0.99521 0.98780 0.88234 1.20946 0.84117 0.88778 1.01124 1.44128 1.06891 1.51592 1.28879 1.19172 0.90586 1.04496 1.24348 0.91623 1.25026 0.97263 0.96039 1.01156 1.70040 1.18526 1.24528 1.41275 0.86278 0.79822 0.78397 0.82168 1.21441 1.21678 1.20517 1.20905 0.96767 0.87175 0.91695 1.20605 0.90029 0.96948 0.88143 0.93518 1.23344 0.81991 0.99546 0.98706 1.70396 1.30975 1.16111 1.00845 1.22429 0.91956 1.03330 1.00564 1.22642 1.01105 1.07429 0.89166 1.43309 1.14110 1.42431 1.17323 0.74615 0.93346 0.91669 0.92980 0.96848 0.89887 0.95866 0.91149 0.89209 0.95153 0.93507 0.94766 0.92931 0.81733 0.81107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.85 37.16 0.37 -1.70 16 2 C 0.05 0.77 5.32 -3.82 -0.02 0.75 16 3 N -0.51 -9.75 4.36 -227.74 -0.99 -10.74 16 4 C 0.03 0.67 5.46 -3.70 -0.02 0.65 16 5 C 0.18 4.29 5.42 -3.57 -0.02 4.27 16 6 N -0.59 -15.01 3.04 -171.96 -0.52 -15.53 16 7 C -0.26 -6.99 9.63 -15.06 -0.15 -7.13 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 C 0.00 0.11 4.94 -17.43 -0.09 0.03 16 10 N -0.90 -26.03 11.15 55.49 0.62 -25.41 16 11 Si 0.90 21.45 29.59 -169.99 -5.03 16.43 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.16 3.56 5.95 -3.60 -0.02 3.53 16 16 C 0.16 2.92 2.55 -68.75 -0.18 2.74 16 17 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 18 C 0.23 3.84 5.97 -155.41 -0.93 2.91 16 19 N -0.46 -8.16 9.35 -10.82 -0.10 -8.26 16 20 C -0.03 -0.48 11.87 -17.81 -0.21 -0.69 16 21 C -0.07 -0.82 12.04 -16.56 -0.20 -1.02 16 22 N -0.57 -7.38 6.15 -10.23 -0.06 -7.44 16 23 H 0.42 4.23 8.96 -40.82 -0.37 3.86 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.75 6.41 -51.93 -0.33 0.42 16 27 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 28 H 0.08 1.43 5.43 -51.93 -0.28 1.15 16 29 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.07 1.29 6.18 -51.93 -0.32 0.97 16 31 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 1.08 7.96 -51.93 -0.41 0.67 16 36 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 294.30 15.07 4.44 4.44 Total: -1.00 -31.34 294.30 -8.50 -39.83 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.39 Total: 2.35 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -1.46 Total: 4.35 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -1.06 Total: -67.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.34 -8.50 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408279535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.094 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds