Wall clock time and date at job start Mon Mar 30 2020 18:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.46866 * 2 1 4 4 C 1.46896 * 110.99972 * 293.95404 * 3 2 1 5 5 C 1.53238 * 109.36517 * 172.73670 * 4 3 2 6 6 N 1.47144 * 108.49008 * 53.81646 * 5 4 3 7 7 C 1.36927 * 120.86804 * 128.81115 * 6 5 4 8 8 H 1.07996 * 120.00376 * 206.58751 * 7 6 5 9 9 C 1.38813 * 120.00132 * 26.59679 * 7 6 5 10 10 N 1.31621 * 119.99888 * 16.99093 * 9 7 6 11 11 Si 1.86797 * 120.00089 * 197.00187 * 9 7 6 12 12 H 1.48502 * 109.47187 * 89.99346 * 11 9 7 13 13 H 1.48505 * 109.47215 * 209.99287 * 11 9 7 14 14 H 1.48496 * 109.47035 * 329.99639 * 11 9 7 15 15 C 1.47085 * 118.24633 * 308.83289 * 6 5 4 16 16 C 1.46904 * 110.99797 * 169.65022 * 3 2 1 17 17 H 1.09001 * 109.49089 * 67.26693 * 16 3 2 18 18 C 1.50693 * 109.49393 * 307.21639 * 16 3 2 19 19 N 1.30505 * 125.65061 * 335.01897 * 18 16 3 20 20 C 1.34128 * 109.25918 * 180.02562 * 19 18 16 21 21 C 1.34677 * 108.01675 * 0.02562 * 20 19 18 22 22 N 1.35047 * 125.65156 * 154.72112 * 18 16 3 23 23 H 0.96996 * 126.39521 * 359.97438 * 22 18 16 24 24 H 1.09001 * 109.46733 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47082 * 299.99684 * 1 2 3 26 26 H 1.08997 * 109.46836 * 60.00116 * 1 2 3 27 27 H 1.08996 * 109.47075 * 239.99759 * 2 1 3 28 28 H 1.08997 * 109.46836 * 119.99884 * 2 1 3 29 29 H 1.09008 * 109.49085 * 292.70704 * 4 3 2 30 30 H 1.09000 * 109.49696 * 52.75823 * 4 3 2 31 31 H 1.08997 * 109.63285 * 173.54986 * 5 4 3 32 32 H 1.09007 * 109.62396 * 294.13374 * 5 4 3 33 33 H 0.96999 * 119.99831 * 180.02562 * 10 9 7 34 34 H 1.08999 * 109.63077 * 291.47404 * 15 6 5 35 35 H 1.09000 * 109.78085 * 170.99173 * 15 6 5 36 36 H 1.07995 * 125.99314 * 179.97438 * 20 19 18 37 37 H 1.07996 * 126.58534 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 2.0347 3.5512 -1.1429 6 7 3.4490 3.6564 -0.7504 7 6 4.3167 4.4470 -1.4553 8 1 5.3717 4.2161 -1.4646 9 6 3.8405 5.5453 -2.1580 10 7 2.6454 6.0286 -1.8926 11 14 4.8958 6.3373 -3.4804 12 1 4.6169 5.6921 -4.7886 13 1 4.5788 7.7856 -3.5652 14 1 6.3304 6.1636 -3.1387 15 6 3.9058 2.8897 0.4187 16 6 3.4671 1.4317 0.2464 17 1 3.9944 0.9903 -0.5993 18 6 3.7892 0.6582 1.4989 19 7 2.9663 0.4327 2.4864 20 6 3.5933 -0.2862 3.4294 21 6 4.8527 -0.5145 3.0105 22 7 4.9755 0.0786 1.7829 23 1 5.7675 0.0841 1.2230 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.2226 1.6171 -2.0784 30 1 0.6000 1.9678 -1.4352 31 1 1.8844 4.0379 -2.1066 32 1 1.4088 4.0267 -0.3877 33 1 2.3125 6.7959 -2.3839 34 1 3.4597 3.3017 1.3239 35 1 4.9923 2.9392 0.4907 36 1 3.1637 -0.6223 4.3615 37 1 5.6170 -1.0649 3.5389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408279535.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:07 Heat of formation + Delta-G solvation = 79.419493 kcal Electronic energy + Delta-G solvation = -19085.622762 eV Core-core repulsion = 16285.223480 eV Total energy + Delta-G solvation = -2800.399281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.99222 -39.78884 -36.50372 -33.92213 -33.29804 -32.65481 -31.23369 -29.30794 -27.88166 -25.14820 -24.71889 -22.47200 -22.34898 -21.86718 -20.59062 -19.03398 -18.47077 -17.05634 -16.35775 -16.27893 -15.88728 -15.41458 -15.20920 -15.06168 -14.97941 -14.60660 -14.36747 -14.00680 -13.56799 -13.11203 -12.80918 -12.76399 -12.65668 -12.43552 -12.16194 -12.04359 -11.88854 -11.65664 -11.38784 -10.86154 -10.73229 -10.61233 -9.29348 -9.22377 -8.70534 -7.88623 -5.35471 1.16466 1.47879 1.49047 1.58167 2.17698 2.25060 2.50506 3.00255 3.27050 3.44758 3.74050 4.07970 4.19332 4.22744 4.34097 4.37699 4.55929 4.58133 4.62736 4.67115 4.72404 4.78710 4.88057 5.00307 5.07915 5.18498 5.26476 5.32593 5.42863 5.59600 5.67209 5.91407 6.16274 6.30923 6.33681 6.55475 7.09798 7.29566 7.77770 8.34178 9.18495 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.026752 B = 0.006803 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.405489 B = 4114.791948 C = 4854.232958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 N -0.523 5.523 4 C 0.050 3.950 5 C 0.185 3.815 6 N -0.609 5.609 7 C -0.269 4.269 8 H 0.072 0.928 9 C -0.049 4.049 10 N -0.935 5.935 11 Si 0.972 3.028 12 H -0.283 1.283 13 H -0.296 1.296 14 H -0.267 1.267 15 C 0.166 3.834 16 C 0.169 3.831 17 H 0.050 0.950 18 C 0.199 3.801 19 N -0.496 5.496 20 C -0.065 4.065 21 C -0.036 4.036 22 N -0.557 5.557 23 H 0.431 0.569 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.088 0.912 31 H 0.063 0.937 32 H -0.003 1.003 33 H 0.252 0.748 34 H 0.005 0.995 35 H 0.061 0.939 36 H 0.186 0.814 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -15.536 5.314 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.075 4.075 3 N -0.249 5.249 4 C -0.079 4.079 5 C 0.059 3.941 6 N -0.332 5.332 7 C -0.398 4.398 8 H 0.090 0.910 9 C -0.244 4.244 10 N -0.580 5.580 11 Si 0.800 3.200 12 H -0.210 1.210 13 H -0.222 1.222 14 H -0.192 1.192 15 C 0.039 3.961 16 C 0.056 3.944 17 H 0.068 0.932 18 C -0.066 4.066 19 N -0.216 5.216 20 C -0.212 4.212 21 C -0.170 4.170 22 N -0.161 5.161 23 H 0.270 0.730 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.042 0.958 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.015 0.985 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.080 0.920 36 H 0.203 0.797 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.333 -14.884 5.696 16.106 hybrid contribution 1.793 0.244 -1.421 2.301 sum 4.125 -14.640 4.275 15.799 Atomic orbital electron populations 1.21685 0.93896 1.01944 1.01802 1.22191 0.97100 0.88050 1.00207 1.61687 1.11754 1.16636 1.34821 1.22695 1.00532 0.95743 0.88938 1.20686 0.83581 0.91366 0.98429 1.44385 1.06970 1.51952 1.29922 1.19553 0.91231 1.04650 1.24392 0.91007 1.25840 0.98565 0.96775 1.03248 1.70208 1.20366 1.25059 1.42407 0.85201 0.78702 0.76818 0.79292 1.20969 1.22227 1.19182 1.20913 0.97037 0.88909 0.89232 1.20190 0.89769 0.94764 0.89655 0.93243 1.22711 0.83685 1.01815 0.98339 1.70276 1.32582 1.16954 1.01833 1.22920 0.93151 1.04032 1.01138 1.23361 1.01122 1.04802 0.87723 1.43292 1.13533 1.41403 1.17901 0.72968 0.90736 0.92970 0.92864 0.96054 0.90143 0.95799 0.89395 0.91856 0.98509 0.93927 0.97655 0.92030 0.79707 0.76434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.85 71.98 0.71 -3.07 16 2 C 0.05 1.66 5.32 86.31 0.46 2.12 16 3 N -0.52 -20.01 4.36 -874.43 -3.81 -23.82 16 4 C 0.05 2.01 5.46 86.38 0.47 2.49 16 5 C 0.19 9.40 5.42 86.34 0.47 9.87 16 6 N -0.61 -31.71 3.04 -697.97 -2.12 -33.83 16 7 C -0.27 -14.83 9.63 84.04 0.81 -14.02 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 9 C -0.05 -2.72 4.94 84.86 0.42 -2.30 16 10 N -0.93 -55.90 11.15 21.65 0.24 -55.66 16 11 Si 0.97 44.53 29.59 68.60 2.03 46.56 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 15 C 0.17 7.42 5.95 86.35 0.51 7.93 16 16 C 0.17 6.28 2.55 44.24 0.11 6.39 16 17 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 18 C 0.20 6.43 5.97 138.12 0.82 7.25 16 19 N -0.50 -16.92 9.35 -188.13 -1.76 -18.67 16 20 C -0.06 -1.65 11.87 83.53 0.99 -0.66 16 21 C -0.04 -0.70 12.04 83.09 1.00 0.30 16 22 N -0.56 -12.93 6.15 -186.27 -1.15 -14.08 16 23 H 0.43 7.44 8.96 -92.71 -0.83 6.61 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.45 6.41 -2.39 -0.02 1.44 16 27 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 28 H 0.08 2.66 5.43 -2.39 -0.01 2.65 16 29 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 3.21 6.18 -2.39 -0.01 3.19 16 31 H 0.06 3.52 6.12 -2.39 -0.01 3.51 16 32 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 33 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.06 2.55 7.96 -2.39 -0.02 2.54 16 36 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 37 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -69.69 294.30 0.45 -69.23 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.24 Total: 13.97 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 6.78 Total: 16.30 kcal Atomic # 7 Polarization: -137.47 SS G_CDS: -8.59 Total: -146.07 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -69.69 0.45 -69.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408279535.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.653 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds