Wall clock time and date at job start Mon Mar 30 2020 18:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48494 * 109.47567 * 240.00354 * 3 2 1 5 5 H 1.48501 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46983 * 120.00058 * 3 2 1 7 7 C 1.37881 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99668 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46792 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46805 * 179.97438 * 10 9 7 12 12 C 1.46839 * 111.00073 * 65.79152 * 11 10 9 13 13 C 1.53039 * 109.52381 * 185.83846 * 12 11 10 14 14 C 1.53115 * 109.27799 * 300.82123 * 13 12 11 15 15 C 1.53116 * 109.16143 * 57.65020 * 14 13 12 16 16 H 1.09003 * 109.53483 * 62.30905 * 15 14 13 17 17 N 1.46500 * 109.50447 * 182.40425 * 15 14 13 18 18 C 1.35312 * 125.86582 * 34.80340 * 17 15 14 19 19 C 1.35359 * 106.17441 * 179.77310 * 18 17 15 20 20 N 1.33772 * 106.49554 * 0.22938 * 19 18 17 21 21 N 1.28640 * 108.88426 * 359.97438 * 20 19 18 22 22 C 1.46848 * 110.99752 * 190.00145 * 11 10 9 23 23 H 0.97003 * 120.00041 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47336 * 59.99685 * 9 7 2 25 25 H 1.08998 * 109.46521 * 299.99697 * 9 7 2 26 26 H 1.09003 * 109.47295 * 60.00090 * 10 9 7 27 27 H 1.08998 * 109.46885 * 299.99793 * 10 9 7 28 28 H 1.09004 * 109.46203 * 305.85397 * 12 11 10 29 29 H 1.08996 * 109.46225 * 65.82800 * 12 11 10 30 30 H 1.09001 * 109.50136 * 60.76347 * 13 12 11 31 31 H 1.08998 * 109.50495 * 180.83792 * 13 12 11 32 32 H 1.09003 * 109.51893 * 297.74583 * 14 13 12 33 33 H 1.09003 * 109.52416 * 177.55965 * 14 13 12 34 34 H 1.08002 * 126.91567 * 0.04325 * 18 17 15 35 35 H 1.07994 * 126.74720 * 180.25253 * 19 18 17 36 36 H 1.08999 * 109.46285 * 54.14167 * 22 11 10 37 37 H 1.08999 * 109.46087 * 294.17680 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 0.7603 -5.1082 -1.2534 13 6 -0.1040 -6.3677 -1.1602 14 6 0.7959 -7.5810 -0.9102 15 6 1.6020 -7.3533 0.3715 16 1 0.9221 -7.2650 1.2188 17 7 2.5078 -8.4844 0.5871 18 6 3.1359 -9.1925 -0.3798 19 6 3.8705 -10.1333 0.2586 20 7 3.6546 -9.9601 1.5674 21 7 2.8408 -8.9770 1.7286 22 6 2.4168 -6.0653 0.2338 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5574 0.8880 26 1 2.8719 -3.6052 0.8873 27 1 2.8718 -3.6036 -0.8927 28 1 0.1212 -4.2405 -1.4171 29 1 1.4579 -5.2074 -2.0849 30 1 -0.8114 -6.2636 -0.3374 31 1 -0.6496 -6.5047 -2.0938 32 1 1.4774 -7.7084 -1.7514 33 1 0.1809 -8.4742 -0.8000 34 1 3.0685 -9.0357 -1.4463 35 1 4.5061 -10.8770 -0.1987 36 1 2.9810 -5.8927 1.1504 37 1 3.1067 -6.1598 -0.6047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425506783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:30 Heat of formation + Delta-G solvation = 94.098134 kcal Electronic energy + Delta-G solvation = -18205.597351 eV Core-core repulsion = 15405.834583 eV Total energy + Delta-G solvation = -2799.762768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.33138 -39.10535 -35.29955 -33.38499 -32.46943 -31.09285 -30.19029 -29.10842 -25.35901 -24.27345 -23.22117 -22.61218 -21.78035 -20.26991 -19.68331 -17.69096 -16.55877 -16.33679 -15.44228 -15.14398 -14.84322 -14.58924 -14.31268 -14.13708 -13.59361 -13.49408 -13.00196 -12.42175 -12.17843 -11.87752 -11.76330 -11.33770 -11.21300 -11.03020 -10.93602 -10.75477 -10.70541 -10.61869 -10.11970 -9.92738 -9.49595 -9.43117 -9.21118 -8.39251 -7.99885 -6.05852 -4.08716 1.54176 2.22135 2.51832 3.29766 3.34591 3.36715 4.08002 4.21297 4.42614 4.44153 4.53658 4.71849 4.90258 4.99884 5.07412 5.13186 5.30046 5.32965 5.37367 5.52472 5.59014 5.71659 5.74999 5.80011 6.04575 6.08582 6.15349 6.29675 6.35255 6.52260 6.82109 7.25949 7.34822 7.66394 7.78591 7.98257 8.34847 8.46410 8.97751 9.55412 11.05374 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.004187 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.552809 B = 6685.595088 C = 7103.935832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.065 3.935 11 N -0.532 5.532 12 C 0.047 3.953 13 C -0.112 4.112 14 C -0.126 4.126 15 C 0.144 3.856 16 H 0.123 0.877 17 N -0.279 5.279 18 C -0.050 4.050 19 C -0.057 4.057 20 N -0.279 5.279 21 N -0.083 5.083 22 C 0.050 3.950 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.026 0.974 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.096 0.904 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.186 0.814 35 H 0.187 0.813 36 H 0.083 0.917 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 -16.705 -5.039 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.061 4.061 11 N -0.257 5.257 12 C -0.081 4.081 13 C -0.150 4.150 14 C -0.165 4.165 15 C 0.043 3.957 16 H 0.141 0.859 17 N -0.073 5.073 18 C -0.201 4.201 19 C -0.215 4.215 20 N -0.144 5.144 21 N -0.063 5.063 22 C -0.080 4.080 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.203 0.797 35 H 0.204 0.796 36 H 0.101 0.899 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.509 -16.451 -3.100 16.808 hybrid contribution 1.217 0.906 -1.966 2.483 sum 2.725 -15.545 -5.066 16.575 Atomic orbital electron populations 1.69948 1.06024 1.26814 1.50344 1.24975 0.94837 0.99190 0.95154 0.86649 0.79593 0.83073 0.78637 1.20287 1.21218 1.20181 1.21127 0.92960 0.90993 1.51349 0.92836 1.19104 0.93886 0.89910 0.97926 1.22378 0.96887 0.87563 0.99312 1.61980 1.26915 1.01851 1.34969 1.22240 0.97030 0.98772 0.90066 1.21578 0.97802 0.92715 1.02941 1.21986 0.98874 1.00284 0.95339 1.21862 0.90002 0.82144 1.01726 0.85869 1.47722 1.31303 1.23385 1.04855 1.23612 1.01145 0.97532 0.97825 1.23590 1.04587 1.02698 0.90592 1.75111 1.11445 1.10568 1.17274 1.78350 1.12967 1.07663 1.07308 1.22314 0.94053 0.89722 1.01871 0.92859 0.96366 0.95529 0.91803 0.95886 0.88540 0.95173 0.90262 0.90444 0.91054 0.90727 0.79687 0.79579 0.89894 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 10 C 0.06 1.29 4.90 -3.82 -0.02 1.27 16 11 N -0.53 -8.68 4.66 -234.67 -1.09 -9.77 16 12 C 0.05 0.67 5.29 -3.84 -0.02 0.65 16 13 C -0.11 -1.19 6.09 -26.65 -0.16 -1.35 16 14 C -0.13 -1.18 4.97 -26.61 -0.13 -1.31 16 15 C 0.14 1.68 3.29 -67.85 -0.22 1.46 16 16 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 17 N -0.28 -3.46 3.26 -54.68 -0.18 -3.63 16 18 C -0.05 -0.50 10.68 -17.04 -0.18 -0.68 16 19 C -0.06 -0.62 12.05 -17.73 -0.21 -0.84 16 20 N -0.28 -4.10 12.41 30.24 0.38 -3.72 16 21 N -0.08 -1.27 13.17 60.35 0.79 -0.47 16 22 C 0.05 0.69 5.07 -3.84 -0.02 0.67 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.47 6.43 -51.93 -0.33 0.13 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.28 7.99 -51.93 -0.41 0.86 16 27 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.10 1.60 6.21 -51.93 -0.32 1.28 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.58 7.06 -51.93 -0.37 0.22 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.19 1.21 7.24 -52.49 -0.38 0.83 16 35 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -31.16 301.61 -6.94 -38.10 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.58 Total: -3.11 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.52 Total: -12.73 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.64 Total: -43.02 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.16 -6.94 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425506783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.200 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds