Wall clock time and date at job start Mon Mar 30 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00254 * 2 1 4 4 H 1.48494 * 109.47567 * 240.00354 * 3 2 1 5 5 H 1.48501 * 109.47081 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46983 * 120.00058 * 3 2 1 7 7 C 1.37881 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99668 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46792 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.46805 * 179.97438 * 10 9 7 12 12 C 1.46839 * 111.00073 * 65.79152 * 11 10 9 13 13 C 1.53039 * 109.52381 * 185.83846 * 12 11 10 14 14 C 1.53115 * 109.27799 * 300.82123 * 13 12 11 15 15 C 1.53116 * 109.16143 * 57.65020 * 14 13 12 16 16 H 1.09003 * 109.53483 * 62.30905 * 15 14 13 17 17 N 1.46500 * 109.50447 * 182.40425 * 15 14 13 18 18 C 1.35312 * 125.86582 * 34.80340 * 17 15 14 19 19 C 1.35359 * 106.17441 * 179.77310 * 18 17 15 20 20 N 1.33772 * 106.49554 * 0.22938 * 19 18 17 21 21 N 1.28640 * 108.88426 * 359.97438 * 20 19 18 22 22 C 1.46848 * 110.99752 * 190.00145 * 11 10 9 23 23 H 0.97003 * 120.00041 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47336 * 59.99685 * 9 7 2 25 25 H 1.08998 * 109.46521 * 299.99697 * 9 7 2 26 26 H 1.09003 * 109.47295 * 60.00090 * 10 9 7 27 27 H 1.08998 * 109.46885 * 299.99793 * 10 9 7 28 28 H 1.09004 * 109.46203 * 305.85397 * 12 11 10 29 29 H 1.08996 * 109.46225 * 65.82800 * 12 11 10 30 30 H 1.09001 * 109.50136 * 60.76347 * 13 12 11 31 31 H 1.08998 * 109.50495 * 180.83792 * 13 12 11 32 32 H 1.09003 * 109.51893 * 297.74583 * 14 13 12 33 33 H 1.09003 * 109.52416 * 177.55965 * 14 13 12 34 34 H 1.08002 * 126.91567 * 0.04325 * 18 17 15 35 35 H 1.07994 * 126.74720 * 180.25253 * 19 18 17 36 36 H 1.08999 * 109.46285 * 54.14167 * 22 11 10 37 37 H 1.08999 * 109.46087 * 294.17680 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 0.7603 -5.1082 -1.2534 13 6 -0.1040 -6.3677 -1.1602 14 6 0.7959 -7.5810 -0.9102 15 6 1.6020 -7.3533 0.3715 16 1 0.9221 -7.2650 1.2188 17 7 2.5078 -8.4844 0.5871 18 6 3.1359 -9.1925 -0.3798 19 6 3.8705 -10.1333 0.2586 20 7 3.6546 -9.9601 1.5674 21 7 2.8408 -8.9770 1.7286 22 6 2.4168 -6.0653 0.2338 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5563 -0.8919 25 1 0.6240 -2.5574 0.8880 26 1 2.8719 -3.6052 0.8873 27 1 2.8718 -3.6036 -0.8927 28 1 0.1212 -4.2405 -1.4171 29 1 1.4579 -5.2074 -2.0849 30 1 -0.8114 -6.2636 -0.3374 31 1 -0.6496 -6.5047 -2.0938 32 1 1.4774 -7.7084 -1.7514 33 1 0.1809 -8.4742 -0.8000 34 1 3.0685 -9.0357 -1.4463 35 1 4.5061 -10.8770 -0.1987 36 1 2.9810 -5.8927 1.1504 37 1 3.1067 -6.1598 -0.6047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425506783.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:29 Heat of formation + Delta-G solvation = 72.679459 kcal Electronic energy + Delta-G solvation = -18206.526134 eV Core-core repulsion = 15405.834583 eV Total energy + Delta-G solvation = -2800.691551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.23867 -40.23556 -36.59142 -35.06027 -33.79895 -31.97770 -31.55547 -30.52108 -26.99175 -25.41060 -24.48430 -23.64180 -22.92422 -21.71235 -20.70469 -18.73198 -18.45779 -17.33075 -16.63081 -16.53440 -16.17518 -15.87714 -15.44443 -15.20069 -14.71681 -14.67298 -14.30458 -14.07138 -13.59525 -13.22877 -12.86055 -12.78210 -12.66267 -12.51499 -12.26307 -11.97438 -11.82963 -11.73849 -11.68433 -11.42167 -11.26584 -10.93233 -10.53261 -10.33147 -9.31590 -8.20727 -6.31646 0.66276 1.32411 1.40503 1.42832 1.50754 1.64560 2.39725 2.96752 3.13079 3.29655 3.53321 3.67021 3.82806 4.03569 4.09006 4.18184 4.30728 4.36983 4.40117 4.46887 4.50751 4.62211 4.65096 4.87226 4.92468 4.97164 5.01350 5.11902 5.27824 5.33005 5.43713 5.63573 5.65472 5.75767 6.04657 6.16022 6.29060 6.84905 7.37391 7.54176 8.90909 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.004187 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.552809 B = 6685.595088 C = 7103.935832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.038 3.962 10 C 0.081 3.919 11 N -0.544 5.544 12 C 0.045 3.955 13 C -0.103 4.103 14 C -0.115 4.115 15 C 0.151 3.849 16 H 0.110 0.890 17 N -0.281 5.281 18 C -0.035 4.035 19 C -0.062 4.062 20 N -0.312 5.312 21 N -0.131 5.131 22 C 0.057 3.943 23 H 0.264 0.736 24 H 0.003 0.997 25 H -0.008 1.008 26 H 0.057 0.943 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.221 0.779 36 H 0.064 0.936 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -17.843 -6.922 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.046 4.046 11 N -0.270 5.270 12 C -0.082 4.082 13 C -0.142 4.142 14 C -0.154 4.154 15 C 0.049 3.951 16 H 0.128 0.872 17 N -0.074 5.074 18 C -0.187 4.187 19 C -0.220 4.220 20 N -0.177 5.177 21 N -0.110 5.110 22 C -0.073 4.073 23 H 0.073 0.927 24 H 0.021 0.979 25 H 0.011 0.989 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.244 0.756 35 H 0.238 0.762 36 H 0.083 0.917 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.454 -17.610 -4.967 18.461 hybrid contribution 0.926 1.216 -1.416 2.083 sum 3.380 -16.394 -6.382 17.914 Atomic orbital electron populations 1.70081 1.07689 1.27850 1.51238 1.25895 0.95718 1.03107 0.94611 0.85541 0.78323 0.78307 0.79118 1.19089 1.20784 1.19464 1.21589 0.93470 0.92386 1.51171 0.92385 1.18915 0.94125 0.91498 0.95448 1.21960 0.95501 0.87986 0.99137 1.61823 1.27241 1.01281 1.36615 1.22276 0.97027 0.99558 0.89385 1.21530 0.97287 0.91340 1.04027 1.21968 0.98836 1.00082 0.94472 1.21753 0.89454 0.81103 1.02809 0.87217 1.47758 1.31358 1.23358 1.04967 1.24319 0.99242 0.95980 0.99145 1.24270 1.04813 1.03505 0.89383 1.75059 1.11990 1.11020 1.19658 1.78338 1.14722 1.09032 1.08860 1.22225 0.93964 0.89698 1.01401 0.92717 0.97914 0.98927 0.92415 0.95532 0.91712 0.93971 0.91267 0.87731 0.88653 0.88756 0.75568 0.76245 0.91724 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -30.70 9.11 25.60 0.23 -30.47 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.04 1.94 4.90 29.85 0.15 2.08 16 10 C 0.08 3.30 4.90 86.30 0.42 3.72 16 11 N -0.54 -17.81 4.66 -896.37 -4.17 -21.99 16 12 C 0.04 1.25 5.29 86.33 0.46 1.71 16 13 C -0.10 -1.96 6.09 30.65 0.19 -1.78 16 14 C -0.12 -1.73 4.97 30.67 0.15 -1.58 16 15 C 0.15 3.26 3.29 45.04 0.15 3.41 16 16 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 17 N -0.28 -6.42 3.26 -326.92 -1.06 -7.48 16 18 C -0.04 -0.58 10.68 83.49 0.89 0.31 16 19 C -0.06 -1.17 12.05 83.73 1.01 -0.17 16 20 N -0.31 -8.92 12.41 -58.25 -0.72 -9.64 16 21 N -0.13 -3.93 13.17 37.02 0.49 -3.44 16 22 C 0.06 1.50 5.07 86.32 0.44 1.94 16 23 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 24 H 0.00 0.14 6.43 -2.39 -0.02 0.13 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.06 2.37 7.99 -2.39 -0.02 2.35 16 27 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 28 H 0.06 2.21 6.21 -2.39 -0.01 2.20 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.04 7.06 -2.39 -0.02 1.02 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.23 1.62 7.24 -2.91 -0.02 1.60 16 35 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16 36 H 0.06 1.94 8.01 -2.39 -0.02 1.92 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.28 301.61 2.43 -67.86 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.04 Total: 4.46 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.55 Total: -20.06 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -5.19 Total: -97.92 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.28 2.43 -67.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425506783.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.535 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds