Wall clock time and date at job start Mon Mar 30 2020 18:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00064 * 2 1 4 4 H 1.48499 * 109.47313 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47171 * 300.00113 * 3 2 1 6 6 H 1.48501 * 109.47019 * 59.99837 * 3 2 1 7 7 C 1.37877 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47444 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47263 * 180.02562 * 10 9 7 12 12 C 1.46842 * 111.00195 * 314.20760 * 11 10 9 13 13 C 1.53039 * 109.52489 * 174.16310 * 12 11 10 14 14 C 1.53122 * 109.30987 * 59.15944 * 13 12 11 15 15 C 1.53119 * 109.15806 * 302.40540 * 14 13 12 16 16 H 1.09006 * 109.50111 * 297.63568 * 15 14 13 17 17 N 1.46499 * 109.50202 * 177.55947 * 15 14 13 18 18 C 1.35308 * 125.86944 * 325.07223 * 17 15 14 19 19 C 1.35347 * 106.17713 * 180.02562 * 18 17 15 20 20 N 1.33774 * 106.49812 * 0.02562 * 19 18 17 21 21 N 1.28637 * 108.88333 * 0.02562 * 20 19 18 22 22 C 1.46847 * 110.99861 * 189.99599 * 11 10 9 23 23 H 0.97000 * 120.00000 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47590 * 59.99940 * 9 7 2 25 25 H 1.09009 * 109.47238 * 300.00155 * 9 7 2 26 26 H 1.08997 * 109.47085 * 59.99768 * 10 9 7 27 27 H 1.09009 * 109.46816 * 300.00152 * 10 9 7 28 28 H 1.09004 * 109.46210 * 294.17987 * 12 11 10 29 29 H 1.09000 * 109.46498 * 54.14254 * 12 11 10 30 30 H 1.09009 * 109.50129 * 179.12103 * 13 12 11 31 31 H 1.09003 * 109.50246 * 299.19630 * 13 12 11 32 32 H 1.09002 * 109.55533 * 182.48360 * 14 13 12 33 33 H 1.09000 * 109.49332 * 62.28677 * 14 13 12 34 34 H 1.07997 * 126.91159 * 0.02959 * 18 17 15 35 35 H 1.08002 * 126.75556 * 180.02562 * 19 18 17 36 36 H 1.09008 * 109.46313 * 65.82493 * 22 11 10 37 37 H 1.08995 * 109.45489 * 305.85398 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.4194 -4.9123 0.9811 13 6 -0.4109 -6.1914 0.8519 14 6 0.4903 -7.4063 1.0894 15 6 1.6460 -7.3786 0.0853 16 1 1.2500 -7.4534 -0.9275 17 7 2.5453 -8.5060 0.3435 18 6 2.8415 -9.0217 1.5588 19 6 3.7033 -10.0412 1.3360 20 7 3.8903 -10.0983 0.0126 21 7 3.1909 -9.1748 -0.5468 22 6 2.4167 -6.0652 0.2368 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8719 -3.6044 0.8894 27 1 2.8719 -3.6044 -0.8906 28 1 0.8367 -4.8503 1.9862 29 1 -0.2167 -4.0463 0.7981 30 1 -1.2115 -6.1819 1.5917 31 1 -0.8404 -6.2469 -0.1484 32 1 -0.0872 -8.3209 0.9548 33 1 0.8881 -7.3714 2.1036 34 1 2.4657 -8.6872 2.5145 35 1 4.1519 -10.6826 2.0801 36 1 2.8246 -5.9977 1.2454 37 1 3.2311 -6.0363 -0.4870 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425506785.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:32 Heat of formation + Delta-G solvation = 96.245282 kcal Electronic energy + Delta-G solvation = -18242.067930 eV Core-core repulsion = 15442.398270 eV Total energy + Delta-G solvation = -2799.669660 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.32873 -39.12149 -35.35858 -33.35481 -32.47153 -31.08881 -30.25633 -29.00026 -25.39324 -24.31687 -23.18001 -22.63721 -21.86700 -20.26189 -19.51921 -17.67549 -16.62720 -16.34786 -15.42352 -15.11948 -14.77809 -14.58913 -14.29830 -14.24406 -13.53642 -13.48554 -12.97861 -12.46995 -12.19739 -11.88760 -11.77828 -11.33173 -11.16656 -11.02413 -10.94004 -10.71025 -10.69032 -10.57351 -10.12660 -9.99778 -9.48566 -9.43093 -9.16899 -8.43296 -7.98085 -6.09029 -4.11540 1.54493 2.22635 2.52010 3.26050 3.34047 3.37880 4.09449 4.22840 4.42458 4.43714 4.54943 4.73750 4.91303 5.02364 5.09579 5.14347 5.27586 5.35473 5.38298 5.55437 5.63564 5.75085 5.77314 5.80828 6.06354 6.12267 6.19605 6.30900 6.39999 6.53008 6.77205 7.25720 7.38667 7.60189 7.72795 7.92698 8.32108 8.46445 8.94781 9.52990 11.02308 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.004199 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.442657 B = 6665.886471 C = 7085.445037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.021 3.979 10 C 0.064 3.936 11 N -0.533 5.533 12 C 0.043 3.957 13 C -0.112 4.112 14 C -0.126 4.126 15 C 0.145 3.855 16 H 0.123 0.877 17 N -0.279 5.279 18 C -0.049 4.049 19 C -0.057 4.057 20 N -0.279 5.279 21 N -0.084 5.084 22 C 0.050 3.950 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.021 0.979 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.186 0.814 35 H 0.187 0.813 36 H 0.037 0.963 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -15.710 5.473 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.062 4.062 11 N -0.258 5.258 12 C -0.085 4.085 13 C -0.151 4.151 14 C -0.165 4.165 15 C 0.043 3.957 16 H 0.141 0.859 17 N -0.073 5.073 18 C -0.200 4.200 19 C -0.215 4.215 20 N -0.144 5.144 21 N -0.064 5.064 22 C -0.080 4.080 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.122 0.878 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.203 0.797 35 H 0.204 0.796 36 H 0.055 0.945 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.475 -15.804 3.477 16.189 hybrid contribution 0.589 1.262 2.082 2.505 sum 1.064 -14.542 5.559 15.605 Atomic orbital electron populations 1.69963 1.06027 1.26642 1.50578 1.24982 0.94852 0.99261 0.95129 0.86526 0.80111 0.83664 0.77648 1.19740 1.20896 1.20997 1.21192 0.93084 0.90889 1.51038 0.92655 1.19264 0.94040 0.90382 0.97916 1.22366 0.97141 0.87328 0.99406 1.62007 1.11242 1.03175 1.49395 1.22333 0.94102 0.98794 0.93273 1.21598 0.97409 0.92757 1.03303 1.21994 0.95683 1.00550 0.98289 1.21857 0.88272 0.82281 1.03285 0.85941 1.47724 1.30839 1.23646 1.05070 1.23615 1.04326 0.99955 0.92137 1.23589 1.02300 1.01092 0.94500 1.75106 1.17505 1.14803 1.06993 1.78341 1.07011 1.03527 1.17499 1.22311 0.95461 0.89533 1.00653 0.92953 0.95475 0.96046 0.95917 0.91555 0.95068 0.87842 0.90433 0.90398 0.90768 0.91035 0.79664 0.79570 0.94496 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.52 4.22 -27.88 -0.12 0.40 16 10 C 0.06 1.27 5.21 -3.83 -0.02 1.25 16 11 N -0.53 -8.72 4.81 -234.67 -1.13 -9.85 16 12 C 0.04 0.63 4.85 -3.84 -0.02 0.62 16 13 C -0.11 -1.23 6.09 -26.65 -0.16 -1.39 16 14 C -0.13 -1.21 4.97 -26.61 -0.13 -1.34 16 15 C 0.14 1.69 3.29 -67.85 -0.22 1.47 16 16 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 17 N -0.28 -3.47 3.26 -54.69 -0.18 -3.65 16 18 C -0.05 -0.50 10.68 -17.05 -0.18 -0.68 16 19 C -0.06 -0.63 12.05 -17.74 -0.21 -0.84 16 20 N -0.28 -4.09 12.41 30.24 0.38 -3.72 16 21 N -0.08 -1.28 13.17 60.35 0.79 -0.48 16 22 C 0.05 0.70 5.03 -3.83 -0.02 0.68 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.54 6.21 -51.92 -0.32 0.22 16 26 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 1.81 5.81 -51.93 -0.30 1.51 16 30 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.61 7.06 -51.93 -0.37 0.25 16 34 H 0.19 1.25 7.24 -52.49 -0.38 0.87 16 35 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 37 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -30.79 300.53 -6.95 -37.75 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.56 Total: -2.62 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -1.50 Total: -12.91 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.60 Total: -42.86 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.79 -6.95 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425506785.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.990 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds