Wall clock time and date at job start Mon Mar 30 2020 18:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47224 * 305.52796 * 3 2 1 5 5 C 1.46848 * 111.00217 * 294.21270 * 4 3 2 6 6 C 1.53034 * 109.52451 * 174.16239 * 5 4 3 7 7 C 1.53124 * 109.28084 * 59.17848 * 6 5 4 8 8 C 1.50700 * 109.57882 * 182.41109 * 7 6 5 9 9 O 1.21289 * 120.00315 * 119.70994 * 8 7 6 10 10 N 1.34779 * 119.99779 * 299.71973 * 8 7 6 11 11 C 1.46496 * 119.99795 * 359.97438 * 10 8 7 12 12 C 1.37094 * 119.99796 * 180.02562 * 10 8 7 13 13 H 1.08000 * 120.00168 * 321.50111 * 12 10 8 14 14 C 1.38950 * 120.00053 * 141.49898 * 12 10 8 15 15 N 1.31416 * 120.00170 * 157.26174 * 14 12 10 16 16 Si 1.86795 * 120.00008 * 337.26879 * 14 12 10 17 17 H 1.48500 * 109.47519 * 95.08698 * 16 14 12 18 18 H 1.48507 * 109.47184 * 215.08874 * 16 14 12 19 19 H 1.48505 * 109.47320 * 335.08336 * 16 14 12 20 20 C 1.53121 * 109.15738 * 302.34642 * 7 6 5 21 21 C 1.46852 * 110.99821 * 169.99960 * 4 3 2 22 22 H 4.40882 * 5.52166 * 179.97438 * 4 1 2 23 23 H 1.09005 * 109.46821 * 185.53057 * 3 2 1 24 24 H 1.09003 * 109.47217 * 65.53266 * 3 2 1 25 25 H 1.09002 * 109.46200 * 294.17745 * 5 4 3 26 26 H 1.08998 * 109.46174 * 54.14308 * 5 4 3 27 27 H 1.09004 * 109.50613 * 299.24165 * 6 5 4 28 28 H 1.08993 * 109.50504 * 179.11803 * 6 5 4 29 29 H 1.08994 * 109.52070 * 62.24781 * 7 6 5 30 30 H 1.08998 * 109.47112 * 88.30266 * 11 10 8 31 31 H 1.09002 * 109.46874 * 208.29817 * 11 10 8 32 32 H 1.08994 * 109.47439 * 328.29298 * 11 10 8 33 33 H 0.96997 * 120.00099 * 180.02562 * 15 14 12 34 34 H 1.08994 * 109.50756 * 297.71098 * 20 7 6 35 35 H 1.09002 * 109.50264 * 177.59324 * 20 7 6 36 36 H 1.08995 * 109.46428 * 305.86080 * 21 4 3 37 37 H 1.09005 * 109.45968 * 65.83975 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1360 -0.8039 1.1271 5 6 2.7811 -0.1838 2.4100 6 6 3.1772 -1.1172 3.5562 7 6 4.6843 -1.3813 3.4953 8 6 5.0722 -2.3468 4.5855 9 8 5.5790 -3.4113 4.3008 10 7 4.8558 -2.0274 5.8769 11 6 4.2441 -0.7414 6.2207 12 6 5.2092 -2.9054 6.8686 13 1 5.0652 -3.9664 6.7271 14 6 5.7527 -2.4304 8.0559 15 7 5.6815 -3.1574 9.1484 16 14 6.5844 -0.7584 8.0993 17 1 5.6102 0.2676 8.5503 18 1 7.7313 -0.8003 9.0419 19 1 7.0733 -0.4133 6.7402 20 6 5.0344 -1.9823 2.1312 21 6 4.5845 -1.0238 1.0262 22 1 -1.0499 0.0000 0.0003 23 1 3.0088 1.0238 0.0990 24 1 3.0095 -0.4248 -0.9354 25 1 3.3098 0.7637 2.5140 26 1 1.7063 -0.0051 2.4420 27 1 2.6385 -2.0599 3.4606 28 1 2.9280 -0.6498 4.5088 29 1 5.2240 -0.4440 3.6298 30 1 3.1591 -0.8453 6.2267 31 1 4.5846 -0.4296 7.2081 32 1 4.5334 0.0073 5.4835 33 1 6.0606 -2.8256 9.9773 34 1 4.5249 -2.9385 2.0131 35 1 6.1120 -2.1329 2.0657 36 1 4.8195 -1.4551 0.0532 37 1 5.1048 -0.0723 1.1369 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490594515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:37 Heat of formation + Delta-G solvation = 40.019621 kcal Electronic energy + Delta-G solvation = -18660.895626 eV Core-core repulsion = 15826.495087 eV Total energy + Delta-G solvation = -2834.400539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -39.73095 -38.00439 -34.87603 -34.36199 -32.36983 -31.71162 -30.63707 -27.53012 -26.43004 -25.05047 -23.07126 -22.88913 -20.03537 -18.59776 -18.24278 -17.06353 -16.10837 -16.01623 -15.50670 -15.22964 -14.85173 -14.20836 -13.94498 -13.58308 -13.35637 -13.02082 -12.71959 -12.56369 -12.37333 -11.93053 -11.79002 -11.76795 -11.13953 -10.91897 -10.79692 -10.60357 -10.40749 -10.37605 -10.21332 -10.06726 -9.90101 -9.01764 -8.45475 -8.34869 -7.68551 -6.37926 -3.94303 2.58739 2.73200 3.03489 3.22421 3.27329 3.77166 3.97567 4.16504 4.28268 4.45788 4.88771 4.94184 5.07181 5.13698 5.23546 5.32268 5.38229 5.49762 5.56119 5.68312 5.71495 5.81523 5.85195 5.91004 6.01473 6.09838 6.20626 6.21486 6.35895 6.52886 6.68267 6.97046 7.03655 7.50789 7.57980 8.33041 8.55157 9.00655 9.35148 9.82569 10.74497 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.037313 B = 0.005408 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.238302 B = 5176.287281 C = 5375.733970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.176 4.176 3 C 0.161 3.839 4 N -0.536 5.536 5 C 0.059 3.941 6 C -0.118 4.118 7 C -0.105 4.105 8 C 0.471 3.529 9 O -0.564 6.564 10 N -0.471 5.471 11 C 0.064 3.936 12 C -0.317 4.317 13 H 0.104 0.896 14 C 0.060 3.940 15 N -0.864 5.864 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.092 4.092 21 C 0.058 3.942 22 H 0.216 0.784 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.273 0.727 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 11.075 -14.648 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.176 4.176 3 C 0.034 3.966 4 N -0.261 5.261 5 C -0.068 4.068 6 C -0.156 4.156 7 C -0.127 4.127 8 C 0.259 3.741 9 O -0.445 6.445 10 N -0.193 5.193 11 C -0.080 4.080 12 C -0.444 4.444 13 H 0.121 0.879 14 C -0.146 4.146 15 N -0.501 5.501 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.130 4.130 21 C -0.069 4.069 22 H 0.233 0.767 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.308 10.035 -14.575 18.787 hybrid contribution 0.619 1.788 0.359 1.926 sum -5.689 11.824 -14.216 19.346 Atomic orbital electron populations 1.24868 0.95882 1.01123 1.00241 1.22877 0.94230 1.00009 1.00519 1.18999 0.85171 0.96723 0.95688 1.61911 1.14641 1.47918 1.01625 1.22134 1.00663 0.95393 0.88654 1.21843 0.94890 1.00869 0.98020 1.21318 0.96876 0.99131 0.95408 1.20233 0.81852 0.88581 0.83446 1.90545 1.46359 1.25363 1.82254 1.43651 1.54103 1.16358 1.05237 1.22118 0.98017 0.87156 1.00661 1.19038 1.41107 0.91570 0.92647 0.87866 1.25368 0.96100 0.98112 0.94981 1.69775 1.41918 1.39041 0.99340 0.86958 0.79782 0.84095 0.78666 1.20291 1.21427 1.19001 1.21341 1.01469 0.98918 0.91284 1.22170 0.85984 0.98658 1.00112 0.76696 0.92648 0.88549 0.94800 0.90658 0.90600 0.89881 0.90242 0.92767 0.91953 0.92666 0.91659 0.90252 0.90810 0.90449 0.94792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 19.25 29.55 0.57 -1.47 16 2 C -0.18 -1.98 12.34 -37.12 -0.46 -2.44 16 3 C 0.16 1.64 5.46 -6.61 -0.04 1.61 16 4 N -0.54 -6.68 4.63 -238.17 -1.10 -7.79 16 5 C 0.06 0.75 5.30 -3.83 -0.02 0.73 16 6 C -0.12 -1.79 5.01 -26.65 -0.13 -1.92 16 7 C -0.11 -1.83 1.78 -91.65 -0.16 -1.99 16 8 C 0.47 11.04 7.03 -10.98 -0.08 10.96 16 9 O -0.56 -15.45 15.86 5.55 0.09 -15.37 16 10 N -0.47 -11.54 2.55 -122.20 -0.31 -11.85 16 11 C 0.06 1.26 7.57 59.84 0.45 1.71 16 12 C -0.32 -9.12 9.33 -14.93 -0.14 -9.26 16 13 H 0.10 3.35 7.93 -52.49 -0.42 2.93 16 14 C 0.06 1.68 5.28 -17.47 -0.09 1.59 16 15 N -0.86 -25.28 13.96 55.50 0.77 -24.50 16 16 Si 0.88 20.72 25.13 -169.99 -4.27 16.45 16 17 H -0.28 -6.02 6.66 56.52 0.38 -5.64 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 20 C -0.09 -1.45 4.68 -26.65 -0.12 -1.57 16 21 C 0.06 0.70 5.46 -3.83 -0.02 0.68 16 22 H 0.22 1.42 7.80 -54.10 -0.42 0.99 16 23 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 24 H 0.10 0.84 7.99 -51.93 -0.41 0.42 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.93 7.11 -51.93 -0.37 0.56 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.20 4.62 -51.93 -0.24 0.96 16 29 H 0.08 1.27 7.40 -51.93 -0.38 0.89 16 30 H 0.05 0.95 6.90 -51.93 -0.36 0.59 16 31 H 0.06 1.30 3.50 -51.93 -0.18 1.12 16 32 H 0.05 0.90 6.12 -51.93 -0.32 0.59 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -32.99 295.92 -5.82 -38.81 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.21 Total: 1.16 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.24 Total: -1.37 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.64 Total: -44.14 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.27 Total: 16.45 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.99 -5.82 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490594515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.828 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds