Wall clock time and date at job start Mon Mar 30 2020 18:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46492 * 109.47393 * 223.55465 * 3 2 1 5 5 C 1.37102 * 120.00135 * 264.88254 * 4 3 2 6 6 H 1.07996 * 120.00329 * 202.28477 * 5 4 3 7 7 C 1.38951 * 119.99630 * 22.28776 * 5 4 3 8 8 N 1.31410 * 120.00359 * 10.61386 * 7 5 4 9 9 Si 1.86803 * 119.99787 * 190.61582 * 7 5 4 10 10 H 1.48499 * 109.47065 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47153 * 119.99625 * 9 7 5 12 12 H 1.48499 * 109.47348 * 240.00165 * 9 7 5 13 13 C 1.34774 * 120.00080 * 84.87813 * 4 3 2 14 14 O 1.21297 * 120.00105 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00183 * 0.02562 * 13 4 3 16 16 N 1.46904 * 109.47563 * 174.01887 * 15 13 4 17 17 C 1.46896 * 111.00066 * 163.25446 * 16 15 13 18 18 C 1.53003 * 109.47361 * 288.33540 * 17 16 15 19 19 C 1.46895 * 110.99800 * 287.21086 * 16 15 13 20 20 C 1.53004 * 117.49875 * 243.62205 * 19 16 15 21 21 C 1.52997 * 117.50163 * 174.99858 * 19 16 15 22 22 H 4.40644 * 5.51434 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.47321 * 103.55341 * 3 2 1 24 24 H 1.09009 * 109.47340 * 343.55661 * 3 2 1 25 25 H 0.97000 * 120.00309 * 180.02562 * 8 7 5 26 26 H 1.08994 * 109.47312 * 54.01413 * 15 13 4 27 27 H 1.09003 * 109.46776 * 294.01712 * 15 13 4 28 28 H 1.09001 * 109.47196 * 168.33468 * 17 16 15 29 29 H 1.08998 * 109.47467 * 48.33496 * 17 16 15 30 30 H 1.09001 * 109.47065 * 299.11266 * 18 17 16 31 31 H 1.08996 * 109.47054 * 59.10499 * 18 17 16 32 32 H 1.08994 * 109.47676 * 179.11229 * 18 17 16 33 33 H 1.09005 * 115.55339 * 29.32400 * 19 16 15 34 34 H 1.08998 * 117.49357 * 359.97438 * 20 19 16 35 35 H 1.08995 * 117.50290 * 145.01572 * 20 19 16 36 36 H 1.08997 * 117.50271 * 214.98055 * 21 19 16 37 37 H 1.09007 * 117.49459 * 359.97359 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 1.0018 0.9517 5 6 3.4617 2.2596 0.5156 6 1 4.1373 2.8726 1.0937 7 6 2.9246 2.7457 -0.6701 8 7 1.9497 2.0958 -1.2651 9 14 3.5886 4.3233 -1.4185 10 1 4.6770 4.8579 -0.5614 11 1 4.1212 4.0414 -2.7757 12 1 2.4958 5.3243 -1.5136 13 6 3.2604 0.6864 2.2559 14 8 3.6640 1.5155 3.0439 15 6 2.9006 -0.6962 2.7351 16 7 3.2585 -0.8315 4.1535 17 6 2.5820 -1.9862 4.7593 18 6 1.0911 -1.6797 4.9153 19 6 4.7146 -0.9263 4.3222 20 6 5.2755 -2.2265 4.9019 21 6 5.2599 -0.9541 5.7514 22 1 -1.0502 -0.0001 -0.0003 23 1 3.0092 0.2417 -0.9990 24 1 3.0098 -0.9849 0.2909 25 1 1.5751 2.4350 -2.0930 26 1 3.4461 -1.4369 2.1505 27 1 1.8290 -0.8552 2.6140 28 1 3.0156 -2.1887 5.7386 29 1 2.7084 -2.8588 4.1185 30 1 0.9640 -0.8167 5.5688 31 1 0.6608 -1.4617 3.9379 32 1 0.5863 -2.5423 5.3502 33 1 5.3099 -0.4140 3.5663 34 1 4.5638 -3.0112 5.1584 35 1 6.2397 -2.5699 4.5273 36 1 6.2140 -0.4603 5.9358 37 1 4.5381 -0.9015 6.5666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491012531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:20:41 Heat of formation + Delta-G solvation = 77.241193 kcal Electronic energy + Delta-G solvation = -18788.711563 eV Core-core repulsion = 15955.925073 eV Total energy + Delta-G solvation = -2832.786491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.26474 -37.85844 -35.05205 -34.02916 -32.03612 -31.15355 -30.24674 -26.88054 -26.06456 -24.04826 -22.85869 -21.96495 -20.03915 -18.67923 -17.79159 -16.69758 -16.25576 -16.08828 -15.44189 -14.65927 -14.24215 -14.03632 -13.72662 -13.15627 -12.92298 -12.62253 -12.42337 -12.19450 -11.82804 -11.66542 -11.44680 -11.31325 -11.08364 -11.02461 -10.73322 -10.48366 -10.36971 -10.25709 -10.05419 -9.34724 -9.23339 -8.80095 -8.36811 -7.76835 -7.68786 -6.23608 -3.86062 3.17226 3.27719 3.33807 3.70458 3.87581 4.01805 4.11571 4.20210 4.26720 4.93385 5.09219 5.11669 5.17200 5.22383 5.25536 5.48917 5.52245 5.64289 5.74411 5.78187 5.80024 5.90781 6.01551 6.09704 6.16691 6.22977 6.30908 6.36922 6.42259 6.84316 7.09690 7.33915 7.41080 7.59697 8.14773 8.50555 8.87251 9.20954 9.40988 9.99169 10.75626 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025654 B = 0.006822 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.185809 B = 4103.613469 C = 4823.845531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.105 4.105 3 C 0.234 3.766 4 N -0.449 5.449 5 C -0.305 4.305 6 H 0.101 0.899 7 C 0.028 3.972 8 N -0.875 5.875 9 Si 0.925 3.075 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.458 3.542 14 O -0.558 6.558 15 C 0.044 3.956 16 N -0.486 5.486 17 C 0.048 3.952 18 C -0.150 4.150 19 C 0.045 3.955 20 C -0.230 4.230 21 C -0.170 4.170 22 H 0.197 0.803 23 H 0.112 0.888 24 H 0.055 0.945 25 H 0.266 0.734 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -10.147 5.576 11.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.107 4.107 3 C 0.110 3.890 4 N -0.170 5.170 5 C -0.433 4.433 6 H 0.119 0.881 7 C -0.175 4.175 8 N -0.514 5.514 9 Si 0.752 3.248 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.245 3.755 14 O -0.440 6.440 15 C -0.087 4.087 16 N -0.208 5.208 17 C -0.080 4.080 18 C -0.207 4.207 19 C -0.065 4.065 20 C -0.269 4.269 21 C -0.208 4.208 22 H 0.214 0.786 23 H 0.130 0.870 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.176 -9.239 6.027 11.094 hybrid contribution 0.050 0.099 -1.042 1.048 sum 1.226 -9.140 4.985 10.483 Atomic orbital electron populations 1.24233 0.95343 1.05268 1.04035 1.23183 0.94346 0.95951 0.97174 1.18256 0.84269 0.89647 0.96796 1.43686 1.57332 1.11495 1.04498 1.19686 1.25700 0.91728 1.06186 0.88113 1.25340 0.95162 0.99091 0.97877 1.69960 1.23025 1.39625 1.18800 0.85874 0.78812 0.81418 0.78672 1.19331 1.20778 1.20891 1.19979 0.83987 0.89214 0.82273 1.90541 1.49296 1.50839 1.53280 1.22032 1.01908 0.96843 0.87891 1.61395 1.05214 1.39470 1.14700 1.22193 0.95216 0.91313 0.99275 1.21818 0.94861 1.01551 1.02508 1.22543 0.88506 0.97900 0.97534 1.23630 1.03211 0.92771 1.07337 1.22959 1.02462 1.00223 0.95157 0.78557 0.86985 0.92664 0.92282 0.93235 0.88740 0.90672 0.94826 0.91785 0.92402 0.92598 0.86321 0.88651 0.89204 0.88802 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.63 19.25 29.55 0.57 -5.06 16 2 C -0.10 -2.35 10.96 -37.13 -0.41 -2.76 16 3 C 0.23 5.17 4.91 -6.84 -0.03 5.13 16 4 N -0.45 -11.33 2.59 -117.94 -0.31 -11.64 16 5 C -0.31 -8.41 9.30 -14.93 -0.14 -8.55 16 6 H 0.10 2.92 7.40 -52.49 -0.39 2.53 16 7 C 0.03 0.73 5.10 -17.47 -0.09 0.64 16 8 N -0.87 -23.03 9.01 55.50 0.50 -22.53 16 9 Si 0.93 20.80 29.57 -169.99 -5.03 15.77 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.46 11.15 7.05 -10.99 -0.08 11.07 16 14 O -0.56 -15.53 15.42 5.54 0.09 -15.44 16 15 C 0.04 0.84 4.00 -4.98 -0.02 0.82 16 16 N -0.49 -8.57 4.25 -228.09 -0.97 -9.54 16 17 C 0.05 0.66 4.32 -3.82 -0.02 0.64 16 18 C -0.15 -1.98 9.99 37.16 0.37 -1.61 16 19 C 0.04 0.74 5.37 -67.72 -0.36 0.38 16 20 C -0.23 -2.94 9.54 -26.73 -0.25 -3.20 16 21 C -0.17 -2.38 9.95 -26.73 -0.27 -2.64 16 22 H 0.20 3.37 7.80 -54.08 -0.42 2.94 16 23 H 0.11 2.62 6.51 -51.93 -0.34 2.28 16 24 H 0.06 1.02 6.49 -51.92 -0.34 0.68 16 25 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 26 H 0.05 0.85 6.99 -51.93 -0.36 0.49 16 27 H 0.09 1.77 5.96 -51.93 -0.31 1.46 16 28 H 0.07 0.95 5.83 -51.93 -0.30 0.64 16 29 H 0.03 0.43 7.85 -51.93 -0.41 0.02 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.82 6.50 -51.93 -0.34 0.49 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 2.21 7.41 -51.93 -0.38 1.83 16 34 H 0.10 1.11 5.95 -51.93 -0.31 0.81 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 1.27 7.63 -51.92 -0.40 0.88 16 LS Contribution 305.08 15.07 4.60 4.60 Total: -1.00 -30.87 305.08 -6.97 -37.83 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.12 Total: 6.07 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -0.73 Total: -5.13 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.78 Total: -43.70 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.09 Total: -15.44 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.87 -6.97 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.074 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds