Wall clock time and date at job start Mon Mar 30 2020 18:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 H 1.09006 * 109.47033 * 53.83710 * 3 2 1 5 5 C 1.50703 * 109.47484 * 173.83326 * 3 2 1 6 6 H 1.07997 * 119.99721 * 115.32817 * 5 3 2 7 7 C 1.37879 * 120.00080 * 295.33908 * 5 3 2 8 8 N 1.31513 * 119.99883 * 352.98201 * 7 5 3 9 9 Si 1.86804 * 119.99983 * 172.98694 * 7 5 3 10 10 H 1.48497 * 109.47010 * 269.99829 * 9 7 5 11 11 H 1.48498 * 109.46880 * 29.99329 * 9 7 5 12 12 H 1.48495 * 109.46956 * 149.99567 * 9 7 5 13 13 N 1.46901 * 109.47333 * 293.83984 * 3 2 1 14 14 C 1.46895 * 110.99874 * 158.31550 * 13 3 2 15 15 H 1.08999 * 109.47650 * 37.58361 * 14 13 3 16 16 C 1.53005 * 109.47065 * 277.58184 * 14 13 3 17 17 C 1.50707 * 109.47080 * 157.58726 * 14 13 3 18 18 N 1.30407 * 119.28762 * 24.72472 * 17 14 13 19 19 C 1.33780 * 122.02431 * 179.75862 * 18 17 14 20 20 C 1.35647 * 120.41595 * 0.51477 * 19 18 17 21 21 C 1.41987 * 118.59549 * 359.75263 * 20 19 18 22 22 N 1.31480 * 120.91544 * 179.97438 * 21 20 19 23 23 N 1.35660 * 119.29042 * 204.99670 * 17 14 13 24 24 H 0.97001 * 120.31123 * 359.97438 * 23 17 14 25 25 H 1.09000 * 109.46547 * 305.65819 * 1 2 3 26 26 H 1.08996 * 109.47594 * 65.66211 * 1 2 3 27 27 H 1.09007 * 109.47040 * 185.66564 * 1 2 3 28 28 H 1.09004 * 109.47251 * 240.00416 * 2 1 3 29 29 H 1.09000 * 109.47520 * 120.00354 * 2 1 3 30 30 H 0.97003 * 119.99915 * 355.97517 * 8 7 5 31 31 H 1.00899 * 111.00001 * 34.35288 * 13 3 2 32 32 H 1.08993 * 109.47108 * 305.06172 * 16 14 13 33 33 H 1.09001 * 109.46476 * 65.05948 * 16 14 13 34 34 H 1.09000 * 109.47262 * 185.05883 * 16 14 13 35 35 H 1.08001 * 119.79635 * 180.28871 * 19 18 17 36 36 H 1.07995 * 120.70308 * 179.77643 * 20 19 18 37 37 H 0.96996 * 119.99959 * 0.02620 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5894 1.9872 0.8297 5 6 3.5393 1.4453 0.1526 6 1 4.1628 1.8159 -0.6475 7 6 4.1149 0.9745 1.3137 8 7 3.3576 0.6525 2.3395 9 14 5.9706 0.7941 1.4297 10 1 6.3651 -0.5641 0.9773 11 1 6.6217 1.8119 0.5663 12 1 6.4000 0.9912 2.8374 13 7 1.6755 2.0908 -1.2668 14 6 1.6703 3.5531 -1.1274 15 1 2.4888 3.8589 -0.4758 16 6 0.3398 4.0028 -0.5203 17 6 1.8436 4.1876 -2.4833 18 7 1.4908 3.5231 -3.5484 19 6 1.6162 4.0352 -4.7780 20 6 2.1321 5.2771 -4.9554 21 6 2.5284 6.0182 -3.8109 22 7 3.0344 7.2259 -3.9301 23 7 2.3685 5.4356 -2.5699 24 1 2.6289 5.9140 -1.7672 25 1 -0.3632 0.5991 0.8350 26 1 -0.3634 0.4235 -0.9363 27 1 -0.3633 -1.0227 0.1015 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.3997 0.8009 2.3007 31 1 0.7842 1.7561 -1.6009 32 1 -0.4829 3.6200 -1.1241 33 1 0.2552 3.6168 0.4956 34 1 0.2994 5.0918 -0.4997 35 1 1.3081 3.4547 -5.6351 36 1 2.2387 5.6936 -5.9461 37 1 3.1409 7.6225 -4.8088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576884983.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:31 Heat of formation + Delta-G solvation = 34.092779 kcal Electronic energy + Delta-G solvation = -18556.363253 eV Core-core repulsion = 15753.998458 eV Total energy + Delta-G solvation = -2802.364795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.98920 -38.83347 -36.33556 -35.67657 -34.27848 -33.19792 -30.56925 -30.04590 -27.57208 -26.06886 -24.77153 -24.50976 -22.17147 -21.68094 -19.41294 -18.73450 -18.37455 -17.79214 -16.79591 -16.31628 -15.88538 -15.66011 -15.61481 -15.30570 -14.53611 -14.23534 -14.00130 -13.81524 -13.69306 -13.16535 -12.93173 -12.59492 -12.57242 -12.37512 -12.28862 -11.95017 -11.76845 -11.60254 -11.38413 -10.91964 -10.63573 -10.41708 -10.39420 -9.05682 -8.71537 -8.45256 -6.19479 -0.19910 0.95855 1.55889 1.58278 1.61469 1.79434 2.59835 2.68202 3.05163 3.25119 3.40865 3.79651 3.92310 4.05350 4.22182 4.29819 4.41569 4.42721 4.46577 4.57668 4.68155 4.78129 4.94351 4.96525 5.10201 5.16866 5.22599 5.23791 5.41858 5.46355 5.60647 6.03300 6.12902 6.22167 6.52903 6.66703 7.00201 7.06278 7.28961 7.55716 8.88208 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.006609 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.911509 B = 4235.326320 C = 4977.151807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C 0.215 3.785 4 H -0.018 1.018 5 C -0.587 4.587 6 H 0.037 0.963 7 C -0.023 4.023 8 N -0.936 5.936 9 Si 1.104 2.896 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.658 5.658 14 C 0.138 3.862 15 H 0.091 0.909 16 C -0.166 4.166 17 C 0.428 3.572 18 N -0.551 5.551 19 C 0.143 3.857 20 C -0.299 4.299 21 C 0.414 3.586 22 N -0.814 5.814 23 N -0.609 5.609 24 H 0.423 0.577 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.262 0.738 31 H 0.341 0.659 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.187 0.813 36 H 0.165 0.835 37 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 6.290 -10.221 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.107 3.893 4 H -0.001 1.001 5 C -0.626 4.626 6 H 0.055 0.945 7 C -0.222 4.222 8 N -0.574 5.574 9 Si 0.929 3.071 10 H -0.206 1.206 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.290 5.290 14 C 0.024 3.976 15 H 0.109 0.891 16 C -0.226 4.226 17 C 0.161 3.839 18 N -0.273 5.273 19 C 0.004 3.996 20 C -0.327 4.327 21 C 0.142 3.858 22 N -0.450 5.450 23 N -0.233 5.233 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.204 0.796 36 H 0.182 0.818 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.038 5.661 -8.998 11.764 hybrid contribution -1.492 1.281 -1.124 2.265 sum -6.530 6.943 -10.122 13.903 Atomic orbital electron populations 1.21775 0.95235 1.01627 1.01300 1.21614 0.95230 0.98744 1.00320 1.19104 0.94302 0.90514 0.85408 1.00067 1.22250 0.92913 1.44982 1.02429 0.94498 1.26776 1.09617 0.93669 0.92183 1.70869 1.07264 1.47037 1.32199 0.83062 0.71174 0.77116 0.75759 1.20561 1.20614 1.21170 1.60152 1.36611 1.01505 1.30765 1.20342 0.99500 0.90324 0.87386 0.89076 1.22404 0.95760 1.02780 1.01644 1.23367 0.83787 0.79599 0.97112 1.68128 1.27070 1.34041 0.98069 1.22871 0.89511 0.92577 0.94638 1.22839 1.12031 0.98757 0.99071 1.19070 0.90923 0.91335 0.84489 1.69520 1.30469 1.10718 1.34341 1.42916 1.55477 1.15480 1.09383 0.73786 0.93635 0.91735 0.92306 0.93625 0.93997 0.92706 0.83838 0.90878 0.91634 0.90428 0.79640 0.81772 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.64 71.98 0.69 -3.97 16 2 C -0.12 -5.17 5.22 30.59 0.16 -5.01 16 3 C 0.21 9.72 1.50 44.17 0.07 9.79 16 4 H -0.02 -0.87 6.36 -2.38 -0.02 -0.88 16 5 C -0.59 -31.20 8.24 25.60 0.21 -30.99 16 6 H 0.04 2.05 7.82 -2.91 -0.02 2.03 16 7 C -0.02 -1.27 5.19 84.66 0.44 -0.83 16 8 N -0.94 -53.66 12.82 21.45 0.27 -53.38 16 9 Si 1.10 49.86 29.91 68.60 2.05 51.91 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 13 N -0.66 -24.93 5.55 -477.14 -2.65 -27.57 16 14 C 0.14 4.47 2.79 44.17 0.12 4.59 16 15 H 0.09 3.33 7.53 -2.39 -0.02 3.32 16 16 C -0.17 -4.32 9.13 71.98 0.66 -3.66 16 17 C 0.43 12.90 6.86 137.96 0.95 13.85 16 18 N -0.55 -16.48 9.69 -187.27 -1.82 -18.30 16 19 C 0.14 3.46 11.16 83.80 0.94 4.39 16 20 C -0.30 -7.07 9.97 22.60 0.23 -6.85 16 21 C 0.41 11.68 7.87 134.38 1.06 12.73 16 22 N -0.81 -23.60 14.19 -54.62 -0.78 -24.38 16 23 N -0.61 -17.01 5.42 -183.31 -0.99 -18.01 16 24 H 0.42 10.80 8.82 -92.71 -0.82 9.98 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.85 6.67 -2.39 -0.02 1.84 16 27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.04 2.05 6.26 -2.39 -0.01 2.04 16 30 H 0.26 14.95 6.19 -92.71 -0.57 14.38 16 31 H 0.34 11.73 6.39 -89.69 -0.57 11.15 16 32 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 33 H 0.06 1.84 7.29 -2.39 -0.02 1.83 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.35 8.88 8.77 -92.71 -0.81 8.06 16 Total: -1.00 -63.02 305.31 0.70 -62.31 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.90 Total: 33.36 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 5.51 Total: -5.94 kcal Atomic # 7 Polarization: -135.69 SS G_CDS: -5.96 Total: -141.64 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.91 kcal Total: -63.02 0.70 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576884983.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.404 kcal (2) G-P(sol) polarization free energy of solvation -63.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds