Wall clock time and date at job start Mon Mar 30 2020 18:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30292 * 126.34842 * 2 1 4 4 N 1.28525 * 110.05408 * 179.69012 * 3 2 1 5 5 C 1.31217 * 109.85687 * 0.44973 * 4 3 2 6 6 N 1.38580 * 126.47173 * 179.82812 * 5 4 3 7 7 C 1.46898 * 111.00569 * 123.63663 * 6 5 4 8 8 C 1.46910 * 110.99742 * 359.68300 * 6 5 4 9 9 H 1.08994 * 109.47077 * 310.00276 * 8 6 5 10 10 C 1.52998 * 109.47014 * 70.00256 * 8 6 5 11 11 C 1.50705 * 109.46974 * 190.00404 * 8 6 5 12 12 H 1.08000 * 119.99854 * 359.97438 * 11 8 6 13 13 C 1.37872 * 119.99639 * 179.97438 * 11 8 6 14 14 N 1.31523 * 119.99593 * 179.97438 * 13 11 8 15 15 Si 1.86793 * 120.00246 * 0.02562 * 13 11 8 16 16 H 1.48494 * 109.47385 * 90.00088 * 15 13 11 17 17 H 1.48501 * 109.47010 * 209.99974 * 15 13 11 18 18 H 1.48497 * 109.47122 * 329.99563 * 15 13 11 19 19 N 1.36444 * 107.05938 * 359.55721 * 5 4 3 20 20 C 1.46500 * 127.14136 * 180.24181 * 19 5 4 21 21 C 1.53000 * 117.49584 * 312.29280 * 20 19 5 22 22 C 1.53006 * 117.50008 * 243.63468 * 20 19 5 23 23 H 1.08995 * 109.47447 * 264.85762 * 1 2 3 24 24 H 1.08998 * 109.46946 * 24.86028 * 1 2 3 25 25 H 1.08998 * 109.47042 * 144.85971 * 1 2 3 26 26 H 1.08999 * 109.47007 * 60.00013 * 7 6 5 27 27 H 1.08997 * 109.47524 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.46790 * 300.00251 * 7 6 5 29 29 H 1.09006 * 109.46899 * 179.97438 * 10 8 6 30 30 H 1.08991 * 109.47251 * 299.99904 * 10 8 6 31 31 H 1.09004 * 109.47129 * 60.00027 * 10 8 6 32 32 H 0.97000 * 119.99741 * 180.02562 * 14 13 11 33 33 H 1.08993 * 115.55038 * 97.96505 * 20 19 5 34 34 H 1.08997 * 117.50298 * 359.97438 * 21 20 19 35 35 H 1.09006 * 117.49574 * 145.01938 * 21 20 19 36 36 H 1.09001 * 117.49880 * 214.98206 * 22 20 19 37 37 H 1.09006 * 117.49360 * 359.97149 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 0.0065 5 6 3.5945 -0.6208 0.0014 6 7 4.7579 -1.3737 0.0024 7 6 4.7832 -2.3022 1.1404 8 6 5.9450 -0.5082 0.0027 9 1 5.8498 0.2392 -0.7849 10 6 6.0657 0.1915 1.3579 11 6 7.1754 -1.3431 -0.2431 12 1 7.0846 -2.4099 -0.3848 13 6 8.4168 -0.7449 -0.2870 14 7 9.4906 -1.4736 -0.5009 15 14 8.5738 1.1001 -0.0412 16 1 8.7585 1.3932 1.4028 17 1 9.7457 1.6029 -0.8022 18 1 7.3421 1.7710 -0.5289 19 7 2.3175 -1.1014 0.0010 20 6 1.9010 -2.5060 0.0010 21 6 2.5760 -3.4429 -1.0026 22 6 1.1227 -3.0121 -1.2152 23 1 -0.3634 -0.0921 1.0235 24 1 -0.3633 0.9324 -0.4320 25 1 -0.3633 -0.8404 -0.5915 26 1 3.9300 -2.9776 1.0773 27 1 5.7070 -2.8802 1.1173 28 1 4.7315 -1.7375 2.0713 29 1 6.9468 0.8333 1.3582 30 1 5.1759 0.7953 1.5356 31 1 6.1608 -0.5560 2.1455 32 1 10.3641 -1.0528 -0.5314 33 1 1.6363 -2.9178 0.9748 34 1 3.3297 -3.0143 -1.6631 35 1 2.7552 -4.4714 -0.6890 36 1 0.3463 -3.7571 -1.0414 37 1 0.9201 -2.2998 -2.0151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583818512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:49 Heat of formation + Delta-G solvation = 134.229226 kcal Electronic energy + Delta-G solvation = -19249.849146 eV Core-core repulsion = 16451.826593 eV Total energy + Delta-G solvation = -2798.022553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.59531 -37.73510 -37.44158 -32.88952 -32.64056 -31.39023 -29.60665 -27.58485 -25.46112 -24.86057 -23.46084 -22.84509 -21.50243 -20.12852 -19.24276 -17.28893 -16.64146 -16.08321 -15.58083 -15.00549 -14.78915 -14.01403 -13.78618 -13.72293 -13.27962 -12.92149 -12.60356 -12.29338 -12.12829 -11.75360 -11.71894 -11.64227 -11.26974 -11.13719 -10.95721 -10.68814 -10.48749 -10.14316 -9.86113 -9.70042 -9.54832 -9.20912 -9.04250 -8.58677 -7.47709 -6.11451 -4.11841 2.15761 2.50908 3.30160 3.30827 3.33927 3.42610 3.50265 4.27642 4.40960 4.44972 4.51850 4.58749 4.81098 5.07556 5.22144 5.34755 5.42897 5.48834 5.52720 5.71606 5.76587 5.80269 5.89128 6.01200 6.09773 6.22212 6.32012 6.45801 6.56427 6.56905 6.85463 6.98553 7.20909 7.55175 7.62384 7.91705 8.52546 8.90238 9.26618 9.49820 11.00529 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.007427 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.551087 B = 3769.047667 C = 4392.549149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.152 3.848 3 N -0.288 5.288 4 N -0.328 5.328 5 C 0.385 3.615 6 N -0.435 5.435 7 C 0.030 3.970 8 C 0.198 3.802 9 H 0.056 0.944 10 C -0.183 4.183 11 C -0.512 4.512 12 H 0.083 0.917 13 C 0.077 3.923 14 N -0.896 5.896 15 Si 0.880 3.120 16 H -0.279 1.279 17 H -0.296 1.296 18 H -0.260 1.260 19 N -0.465 5.465 20 C 0.053 3.947 21 C -0.153 4.153 22 C -0.173 4.173 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.904 -4.370 2.014 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.115 4.115 3 N -0.128 5.128 4 N -0.172 5.172 5 C 0.030 3.970 6 N -0.157 5.157 7 C -0.117 4.117 8 C 0.092 3.908 9 H 0.074 0.926 10 C -0.242 4.242 11 C -0.550 4.550 12 H 0.101 0.899 13 C -0.126 4.126 14 N -0.534 5.534 15 Si 0.710 3.290 16 H -0.206 1.206 17 H -0.223 1.223 18 H -0.184 1.184 19 N -0.163 5.163 20 C -0.052 4.052 21 C -0.190 4.190 22 C -0.211 4.211 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.220 -3.210 1.565 17.586 hybrid contribution -0.044 -0.007 0.813 0.814 sum -17.263 -3.217 2.378 17.721 Atomic orbital electron populations 1.20058 0.84380 1.03949 1.03050 1.24543 0.96236 0.82421 1.08317 1.73932 0.96940 1.24163 1.17723 1.74771 1.10819 1.06945 1.24704 1.23293 0.84447 0.89745 0.99524 1.59036 0.98378 1.17779 1.40494 1.22497 1.03713 0.95391 0.90146 1.19811 0.85582 0.91446 0.93996 0.92618 1.22760 1.00567 1.00372 1.00478 1.20816 0.88234 0.96108 1.49886 0.89856 1.24806 0.95547 0.97884 0.94340 1.69865 0.98393 1.35757 1.49341 0.86950 0.77814 0.86396 0.77841 1.20559 1.22302 1.18416 1.45583 1.05733 1.06397 1.58549 1.21810 1.07284 0.79639 0.96422 1.23409 0.95724 0.99350 1.00531 1.23405 0.96063 1.03311 0.98280 0.90527 0.89291 0.90842 0.92541 0.88231 0.94896 0.93248 0.93254 0.93091 0.92453 0.85196 0.86499 0.86983 0.87216 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.22 36.01 0.37 -0.19 16 2 C 0.15 2.43 8.06 -154.01 -1.24 1.19 16 3 N -0.29 -5.84 12.18 32.99 0.40 -5.44 16 4 N -0.33 -7.42 9.62 30.31 0.29 -7.13 16 5 C 0.39 7.83 6.60 -318.89 -2.11 5.72 16 6 N -0.43 -9.13 4.41 -176.08 -0.78 -9.91 16 7 C 0.03 0.53 8.35 60.06 0.50 1.03 16 8 C 0.20 4.86 1.59 -68.86 -0.11 4.75 16 9 H 0.06 1.51 6.81 -51.93 -0.35 1.16 16 10 C -0.18 -4.30 7.88 37.16 0.29 -4.01 16 11 C -0.51 -14.07 8.49 -34.44 -0.29 -14.36 16 12 H 0.08 2.42 7.37 -52.49 -0.39 2.03 16 13 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 14 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 15 Si 0.88 22.45 24.37 -169.99 -4.14 18.30 16 16 H -0.28 -6.94 6.87 56.52 0.39 -6.55 16 17 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.26 -6.64 6.53 56.52 0.37 -6.27 16 19 N -0.47 -7.46 3.09 -107.01 -0.33 -7.79 16 20 C 0.05 0.61 4.56 -67.93 -0.31 0.30 16 21 C -0.15 -1.69 8.90 -26.69 -0.24 -1.92 16 22 C -0.17 -1.53 9.60 -26.69 -0.26 -1.79 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.59 7.23 -51.93 -0.38 0.21 16 26 H 0.06 0.82 5.22 -51.93 -0.27 0.55 16 27 H 0.10 1.90 6.76 -51.93 -0.35 1.55 16 28 H 0.03 0.59 6.46 -51.93 -0.34 0.26 16 29 H 0.05 1.20 3.27 -51.93 -0.17 1.03 16 30 H 0.05 1.14 6.33 -51.93 -0.33 0.81 16 31 H 0.05 1.12 6.42 -51.93 -0.33 0.79 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.13 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.12 1.68 8.10 -51.93 -0.42 1.26 16 35 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 288.96 15.07 4.35 4.35 Total: -1.00 -33.20 288.96 -7.96 -41.16 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.04 Total: -0.26 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -3.49 Total: -7.18 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.36 Total: -56.38 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.20 -7.96 -41.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583818512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.389 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds