Wall clock time and date at job start Mon Mar 30 2020 18:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30292 * 126.34842 * 2 1 4 4 N 1.28525 * 110.05408 * 179.69012 * 3 2 1 5 5 C 1.31217 * 109.85687 * 0.44973 * 4 3 2 6 6 N 1.38580 * 126.47173 * 179.82812 * 5 4 3 7 7 C 1.46898 * 111.00569 * 123.63663 * 6 5 4 8 8 C 1.46910 * 110.99742 * 359.68300 * 6 5 4 9 9 H 1.08994 * 109.47077 * 310.00276 * 8 6 5 10 10 C 1.52998 * 109.47014 * 70.00256 * 8 6 5 11 11 C 1.50705 * 109.46974 * 190.00404 * 8 6 5 12 12 H 1.08000 * 119.99854 * 359.97438 * 11 8 6 13 13 C 1.37872 * 119.99639 * 179.97438 * 11 8 6 14 14 N 1.31523 * 119.99593 * 179.97438 * 13 11 8 15 15 Si 1.86793 * 120.00246 * 0.02562 * 13 11 8 16 16 H 1.48494 * 109.47385 * 90.00088 * 15 13 11 17 17 H 1.48501 * 109.47010 * 209.99974 * 15 13 11 18 18 H 1.48497 * 109.47122 * 329.99563 * 15 13 11 19 19 N 1.36444 * 107.05938 * 359.55721 * 5 4 3 20 20 C 1.46500 * 127.14136 * 180.24181 * 19 5 4 21 21 C 1.53000 * 117.49584 * 312.29280 * 20 19 5 22 22 C 1.53006 * 117.50008 * 243.63468 * 20 19 5 23 23 H 1.08995 * 109.47447 * 264.85762 * 1 2 3 24 24 H 1.08998 * 109.46946 * 24.86028 * 1 2 3 25 25 H 1.08998 * 109.47042 * 144.85971 * 1 2 3 26 26 H 1.08999 * 109.47007 * 60.00013 * 7 6 5 27 27 H 1.08997 * 109.47524 * 180.02562 * 7 6 5 28 28 H 1.09002 * 109.46790 * 300.00251 * 7 6 5 29 29 H 1.09006 * 109.46899 * 179.97438 * 10 8 6 30 30 H 1.08991 * 109.47251 * 299.99904 * 10 8 6 31 31 H 1.09004 * 109.47129 * 60.00027 * 10 8 6 32 32 H 0.97000 * 119.99741 * 180.02562 * 14 13 11 33 33 H 1.08993 * 115.55038 * 97.96505 * 20 19 5 34 34 H 1.08997 * 117.50298 * 359.97438 * 21 20 19 35 35 H 1.09006 * 117.49574 * 145.01938 * 21 20 19 36 36 H 1.09001 * 117.49880 * 214.98206 * 22 20 19 37 37 H 1.09006 * 117.49360 * 359.97149 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 0.0065 5 6 3.5945 -0.6208 0.0014 6 7 4.7579 -1.3737 0.0024 7 6 4.7832 -2.3022 1.1404 8 6 5.9450 -0.5082 0.0027 9 1 5.8498 0.2392 -0.7849 10 6 6.0657 0.1915 1.3579 11 6 7.1754 -1.3431 -0.2431 12 1 7.0846 -2.4099 -0.3848 13 6 8.4168 -0.7449 -0.2870 14 7 9.4906 -1.4736 -0.5009 15 14 8.5738 1.1001 -0.0412 16 1 8.7585 1.3932 1.4028 17 1 9.7457 1.6029 -0.8022 18 1 7.3421 1.7710 -0.5289 19 7 2.3175 -1.1014 0.0010 20 6 1.9010 -2.5060 0.0010 21 6 2.5760 -3.4429 -1.0026 22 6 1.1227 -3.0121 -1.2152 23 1 -0.3634 -0.0921 1.0235 24 1 -0.3633 0.9324 -0.4320 25 1 -0.3633 -0.8404 -0.5915 26 1 3.9300 -2.9776 1.0773 27 1 5.7070 -2.8802 1.1173 28 1 4.7315 -1.7375 2.0713 29 1 6.9468 0.8333 1.3582 30 1 5.1759 0.7953 1.5356 31 1 6.1608 -0.5560 2.1455 32 1 10.3641 -1.0528 -0.5314 33 1 1.6363 -2.9178 0.9748 34 1 3.3297 -3.0143 -1.6631 35 1 2.7552 -4.4714 -0.6890 36 1 0.3463 -3.7571 -1.0414 37 1 0.9201 -2.2998 -2.0151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583818512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:49 Heat of formation + Delta-G solvation = 112.930478 kcal Electronic energy + Delta-G solvation = -19250.772729 eV Core-core repulsion = 16451.826593 eV Total energy + Delta-G solvation = -2798.946136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.96416 -39.30252 -38.52247 -34.90064 -33.86396 -32.82585 -31.34402 -28.86204 -27.34790 -26.52122 -24.64577 -23.79680 -22.96244 -21.33873 -20.84741 -18.82868 -18.25489 -17.37051 -17.30402 -16.74999 -15.90729 -15.54155 -15.40247 -15.00301 -14.50233 -14.37102 -14.13660 -13.61299 -13.50991 -13.38802 -13.17239 -12.95671 -12.63086 -12.49393 -12.38096 -12.18376 -12.05110 -11.75574 -11.53560 -11.32561 -11.08346 -10.86746 -10.83064 -10.58147 -9.03560 -8.34818 -6.37504 0.84854 1.25002 1.29430 1.33680 1.44954 1.87277 2.27330 2.49588 2.84430 3.00733 3.46462 3.64624 3.71595 3.95953 3.99960 4.15745 4.32831 4.38154 4.50475 4.53160 4.68358 4.70307 4.71877 4.75930 4.87544 4.89178 4.98564 5.03786 5.05445 5.10913 5.16436 5.25191 5.49053 5.75657 5.86644 6.20308 6.53271 6.65953 7.26608 7.85226 8.80381 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.030310 B = 0.007427 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.551087 B = 3769.047667 C = 4392.549149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.176 3.824 3 N -0.338 5.338 4 N -0.375 5.375 5 C 0.366 3.634 6 N -0.441 5.441 7 C 0.034 3.966 8 C 0.208 3.792 9 H 0.026 0.974 10 C -0.172 4.172 11 C -0.505 4.505 12 H 0.059 0.941 13 C 0.032 3.968 14 N -0.934 5.934 15 Si 0.931 3.069 16 H -0.265 1.265 17 H -0.291 1.291 18 H -0.266 1.266 19 N -0.458 5.458 20 C 0.030 3.970 21 C -0.167 4.167 22 C -0.138 4.138 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.269 0.731 33 H 0.161 0.839 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.152 0.848 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.070 -5.284 2.799 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 N -0.177 5.177 4 N -0.219 5.219 5 C 0.008 3.992 6 N -0.163 5.163 7 C -0.112 4.112 8 C 0.100 3.900 9 H 0.044 0.956 10 C -0.231 4.231 11 C -0.544 4.544 12 H 0.077 0.923 13 C -0.167 4.167 14 N -0.574 5.574 15 Si 0.760 3.240 16 H -0.191 1.191 17 H -0.218 1.218 18 H -0.191 1.191 19 N -0.154 5.154 20 C -0.072 4.072 21 C -0.205 4.205 22 C -0.176 4.176 23 H 0.120 0.880 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.178 0.822 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.170 0.830 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.418 -4.141 2.356 20.967 hybrid contribution 0.776 0.178 0.516 0.949 sum -19.642 -3.963 2.872 20.243 Atomic orbital electron populations 1.20385 0.79903 1.05674 1.05304 1.25671 0.98257 0.81363 1.03964 1.73836 0.96672 1.26260 1.20887 1.74609 1.12654 1.08585 1.26018 1.23097 0.85573 0.89559 1.00952 1.58886 0.97791 1.17487 1.42117 1.22522 1.04528 0.95120 0.89056 1.19401 0.86145 0.90819 0.93604 0.95637 1.22608 1.00105 1.00312 1.00047 1.20967 0.89489 0.95326 1.48601 0.92264 1.25434 0.95439 1.01385 0.94483 1.69961 0.98964 1.37369 1.51064 0.86117 0.77372 0.82121 0.78439 1.19142 1.21850 1.19127 1.45808 1.03990 1.08393 1.57226 1.22404 1.08779 0.77229 0.98828 1.23388 0.96597 1.00210 1.00288 1.23534 0.95420 1.02776 0.95824 0.87995 0.88528 0.87925 0.88783 0.89925 0.95053 0.94234 0.93052 0.91972 0.92191 0.82181 0.90581 0.84578 0.82982 0.89005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.86 10.22 71.24 0.73 -0.13 16 2 C 0.18 5.25 8.06 137.64 1.11 6.36 16 3 N -0.34 -13.60 12.18 -49.53 -0.60 -14.20 16 4 N -0.37 -17.19 9.62 -58.01 -0.56 -17.75 16 5 C 0.37 14.83 6.60 260.12 1.72 16.55 16 6 N -0.44 -18.76 4.41 -711.00 -3.13 -21.89 16 7 C 0.03 1.21 8.35 127.69 1.07 2.28 16 8 C 0.21 10.47 1.59 44.17 0.07 10.54 16 9 H 0.03 1.44 6.81 -2.39 -0.02 1.43 16 10 C -0.17 -8.14 7.88 71.98 0.57 -7.57 16 11 C -0.51 -28.60 8.49 25.60 0.22 -28.38 16 12 H 0.06 3.58 7.37 -2.91 -0.02 3.55 16 13 C 0.03 1.85 5.45 84.65 0.46 2.31 16 14 N -0.93 -57.28 13.96 21.45 0.30 -56.98 16 15 Si 0.93 47.16 24.37 68.60 1.67 48.84 16 16 H -0.27 -12.78 6.87 99.48 0.68 -12.10 16 17 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 18 H -0.27 -13.69 6.53 99.48 0.65 -13.04 16 19 N -0.46 -13.79 3.09 -492.47 -1.52 -15.31 16 20 C 0.03 0.58 4.56 44.99 0.20 0.79 16 21 C -0.17 -3.28 8.90 30.62 0.27 -3.00 16 22 C -0.14 -1.83 9.60 30.62 0.29 -1.54 16 23 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.08 7.23 -2.39 -0.02 1.06 16 26 H 0.09 2.54 5.22 -2.39 -0.01 2.53 16 27 H 0.08 3.18 6.76 -2.39 -0.02 3.17 16 28 H 0.03 1.10 6.46 -2.39 -0.02 1.08 16 29 H 0.04 1.92 3.27 -2.38 -0.01 1.91 16 30 H 0.05 2.40 6.33 -2.39 -0.02 2.38 16 31 H 0.06 2.74 6.42 -2.39 -0.02 2.72 16 32 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 33 H 0.16 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 35 H 0.14 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -76.12 288.96 3.86 -72.26 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.00 Total: 6.85 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.71 Total: -1.81 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -5.52 Total: -126.14 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.67 Total: 48.84 kcal Total: -76.12 3.86 -72.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583818512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.193 kcal (2) G-P(sol) polarization free energy of solvation -76.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds