Wall clock time and date at job start Mon Mar 30 2020 18:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00207 * 2 1 4 4 H 1.48500 * 109.47241 * 270.00095 * 3 2 1 5 5 H 1.48497 * 109.46989 * 30.00007 * 3 2 1 6 6 H 1.48498 * 109.46924 * 150.00186 * 3 2 1 7 7 C 1.37883 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99596 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99792 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46826 * 175.72163 * 9 7 2 11 11 C 1.46900 * 111.00266 * 75.56819 * 10 9 7 12 12 C 1.53001 * 109.47093 * 190.00243 * 11 10 9 13 13 C 1.50705 * 109.46823 * 179.97438 * 12 11 10 14 14 C 1.35350 * 126.91264 * 275.03688 * 13 12 11 15 15 N 1.33766 * 106.49826 * 179.97438 * 14 13 12 16 16 N 1.28636 * 108.88640 * 0.02562 * 15 14 13 17 17 N 1.28719 * 110.17881 * 359.97438 * 16 15 14 18 18 H 0.96999 * 125.86772 * 180.02562 * 17 16 15 19 19 C 1.46904 * 110.99989 * 199.52015 * 10 9 7 20 20 C 1.53001 * 109.46819 * 71.58652 * 19 10 9 21 21 C 1.53004 * 117.49869 * 244.13849 * 20 19 10 22 22 C 1.53001 * 60.00094 * 252.51447 * 21 20 19 23 23 H 0.97008 * 119.99839 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47321 * 55.72552 * 9 7 2 25 25 H 1.08999 * 109.47288 * 295.71477 * 9 7 2 26 26 H 1.08998 * 109.47128 * 69.99949 * 11 10 9 27 27 H 1.09004 * 109.46838 * 309.99948 * 11 10 9 28 28 H 1.08998 * 109.47373 * 59.99856 * 12 11 10 29 29 H 1.09001 * 109.46550 * 299.99480 * 12 11 10 30 30 H 1.07998 * 126.75005 * 359.94802 * 14 13 12 31 31 H 1.09000 * 109.47123 * 191.58531 * 19 10 9 32 32 H 1.08995 * 109.47111 * 311.59010 * 19 10 9 33 33 H 1.08999 * 115.55186 * 29.85078 * 20 19 10 34 34 H 1.08996 * 117.49580 * 0.02562 * 21 20 19 35 35 H 1.09000 * 117.49552 * 145.02526 * 21 20 19 36 36 H 1.09000 * 117.49758 * 252.50875 * 22 21 20 37 37 H 1.08997 * 117.49581 * 107.48899 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2508 -2.4991 -0.0005 10 7 2.2021 -3.6138 -0.1045 11 6 2.8888 -3.8409 1.1741 12 6 4.0377 -4.8299 0.9673 13 6 4.7426 -5.0624 2.2789 14 6 5.7299 -4.3083 2.8160 15 7 6.0541 -4.8805 3.9808 16 7 5.3168 -5.9203 4.1533 17 7 4.5156 -6.0669 3.1566 18 1 3.8614 -6.7755 3.0528 19 6 1.5317 -4.8366 -0.5664 20 6 1.1665 -4.6906 -2.0450 21 6 -0.3196 -4.6917 -2.4091 22 6 0.5510 -5.9045 -2.7439 23 1 -0.4850 0.8401 -0.0004 24 1 0.5677 -2.5242 -0.8494 25 1 0.6834 -2.5910 0.9255 26 1 2.1835 -4.2494 1.8978 27 1 3.2852 -2.8962 1.5464 28 1 4.7430 -4.4214 0.2436 29 1 3.6412 -5.7746 0.5950 30 1 6.1698 -3.4196 2.3880 31 1 2.2007 -5.6878 -0.4397 32 1 0.6253 -4.9968 0.0176 33 1 1.8284 -4.0539 -2.6320 34 1 -1.0370 -4.7961 -1.5952 35 1 -0.6356 -4.0555 -3.2358 36 1 0.8076 -6.0662 -3.7908 37 1 0.4062 -6.8071 -2.1502 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590602946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:21:58 Heat of formation + Delta-G solvation = 115.289123 kcal Electronic energy + Delta-G solvation = -18052.624452 eV Core-core repulsion = 15253.780595 eV Total energy + Delta-G solvation = -2798.843857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.21821 -38.05046 -35.91130 -33.60282 -32.94410 -32.17752 -28.76339 -27.70643 -25.22636 -23.21891 -22.80746 -22.03924 -21.50264 -20.79219 -19.63365 -18.13088 -16.48621 -16.02010 -15.57003 -14.97916 -14.65483 -14.38628 -14.22233 -13.75899 -13.44572 -13.03913 -12.57374 -12.05572 -11.90756 -11.60364 -11.27759 -11.23603 -10.99538 -10.88269 -10.71440 -10.70080 -10.54050 -10.47488 -10.00471 -9.92779 -9.45643 -9.23035 -9.00462 -8.43705 -7.40700 -6.04459 -4.05753 1.61199 2.62896 2.77728 3.31298 3.37791 3.40895 4.11340 4.37393 4.48324 4.71490 4.89952 5.07097 5.18850 5.25754 5.31192 5.35797 5.44982 5.56837 5.69550 5.75617 5.82338 5.89693 5.95588 6.11428 6.20749 6.22781 6.33668 6.40273 6.49226 6.71509 6.86153 7.18709 7.28616 7.76978 8.05340 8.11272 8.47580 8.49411 9.01487 9.58555 11.06069 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.012951 B = 0.007123 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.487946 B = 3930.192078 C = 5786.473880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.531 5.531 11 C 0.069 3.931 12 C -0.049 4.049 13 C 0.007 3.993 14 C -0.048 4.048 15 N -0.268 5.268 16 N -0.094 5.094 17 N -0.394 5.394 18 H 0.445 0.555 19 C 0.082 3.918 20 C -0.129 4.129 21 C -0.178 4.178 22 C -0.190 4.190 23 H 0.261 0.739 24 H 0.041 0.959 25 H -0.013 1.013 26 H 0.018 0.982 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.192 0.808 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -12.293 -1.192 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.256 5.256 11 C -0.060 4.060 12 C -0.089 4.089 13 C -0.128 4.128 14 C -0.205 4.205 15 N -0.136 5.136 16 N -0.074 5.074 17 N -0.114 5.114 18 H 0.290 0.710 19 C -0.047 4.047 20 C -0.148 4.148 21 C -0.215 4.215 22 C -0.228 4.228 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.004 0.996 26 H 0.036 0.964 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.209 0.791 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.131 0.869 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.864 -12.491 -0.126 13.405 hybrid contribution -1.170 0.747 -0.529 1.486 sum 3.694 -11.744 -0.655 12.329 Atomic orbital electron populations 1.69953 1.06066 1.26749 1.51080 1.24976 0.94832 0.99270 0.95488 0.86536 0.79793 0.83213 0.78114 1.20658 1.21402 1.19770 1.21155 0.93519 0.89867 1.49892 0.91847 1.19775 0.90113 0.87091 0.96162 1.62113 1.31887 1.04804 1.26750 1.21949 0.93689 0.99030 0.91346 1.20357 0.98233 1.00801 0.89544 1.22481 1.01333 0.91907 0.97030 1.23462 0.99692 1.03324 0.94000 1.75050 1.19196 1.02884 1.16435 1.78226 1.03033 1.16012 1.10148 1.45098 1.29034 1.22605 1.14697 0.71039 1.21665 0.96492 0.93541 0.92988 1.22245 0.95907 1.00014 0.96588 1.22962 0.94386 1.00713 1.03434 1.22938 1.06201 0.92806 1.00810 0.92963 0.94070 0.99559 0.96396 0.89160 0.87805 0.90877 0.79092 0.91897 0.95814 0.86915 0.89269 0.89094 0.89303 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.53 8.60 -34.44 -0.30 -13.83 16 8 H 0.06 1.67 7.66 -52.48 -0.40 1.27 16 9 C 0.19 4.71 4.59 -4.98 -0.02 4.69 16 10 N -0.53 -10.10 4.38 -236.07 -1.04 -11.14 16 11 C 0.07 1.14 4.77 -3.82 -0.02 1.12 16 12 C -0.05 -0.60 5.75 -27.88 -0.16 -0.76 16 13 C 0.01 0.09 6.56 -82.08 -0.54 -0.45 16 14 C -0.05 -0.66 11.99 -17.74 -0.21 -0.87 16 15 N -0.27 -4.24 12.41 30.23 0.38 -3.87 16 16 N -0.09 -1.38 13.38 60.35 0.81 -0.57 16 17 N -0.39 -4.56 6.98 33.54 0.23 -4.33 16 18 H 0.44 3.47 8.96 -190.40 -1.71 1.76 16 19 C 0.08 1.30 5.11 -3.82 -0.02 1.28 16 20 C -0.13 -2.02 4.96 -90.61 -0.45 -2.47 16 21 C -0.18 -2.67 9.97 -26.73 -0.27 -2.93 16 22 C -0.19 -2.39 10.25 -26.73 -0.27 -2.67 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.04 1.08 6.93 -51.93 -0.36 0.72 16 25 H -0.01 -0.36 8.00 -51.93 -0.42 -0.77 16 26 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 27 H 0.09 1.70 7.32 -51.93 -0.38 1.32 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.07 0.76 6.29 -51.93 -0.33 0.43 16 30 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.06 0.83 5.95 -51.93 -0.31 0.52 16 32 H 0.02 0.40 7.79 -51.93 -0.40 -0.01 16 33 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 34 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -30.84 311.43 -8.38 -39.22 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.81 Total: 0.62 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.36 Total: -15.46 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 1.12 Total: -45.25 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.84 -8.38 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590602946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.511 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds