Wall clock time and date at job start Mon Mar 30 2020 18:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36342 * 125.63916 * 2 1 4 4 C 1.34854 * 108.21823 * 179.97438 * 3 2 1 5 5 C 1.40884 * 107.41932 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.29270 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46996 * 90.02631 * 6 5 4 8 8 C 1.47446 * 111.00255 * 69.87362 * 7 6 5 9 9 C 1.54316 * 107.23320 * 123.25926 * 8 7 6 10 10 C 1.55139 * 103.01810 * 22.28197 * 9 8 7 11 11 O 1.42907 * 110.98769 * 82.47898 * 10 9 8 12 12 C 1.50701 * 110.98859 * 206.25316 * 10 9 8 13 13 H 1.08002 * 120.00020 * 118.55137 * 12 10 9 14 14 C 1.37875 * 120.00433 * 298.54581 * 12 10 9 15 15 N 1.31520 * 119.99680 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00216 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47079 * 90.00331 * 16 14 12 18 18 H 1.48500 * 109.47110 * 210.00151 * 16 14 12 19 19 H 1.48505 * 109.47034 * 330.00349 * 16 14 12 20 20 C 1.47843 * 110.99888 * 190.71812 * 7 6 5 21 21 C 1.34850 * 107.41659 * 0.22394 * 5 4 3 22 22 H 1.08992 * 109.47521 * 89.97439 * 1 2 3 23 23 H 1.09006 * 109.47483 * 209.97870 * 1 2 3 24 24 H 1.09006 * 109.46913 * 329.97025 * 1 2 3 25 25 H 1.07997 * 125.89287 * 0.02562 * 3 2 1 26 26 H 1.07998 * 126.29047 * 179.97438 * 4 3 2 27 27 H 1.08991 * 109.47128 * 330.02545 * 6 5 4 28 28 H 1.08999 * 109.47198 * 210.02019 * 6 5 4 29 29 H 1.08997 * 109.88511 * 242.66682 * 8 7 6 30 30 H 1.08994 * 109.88544 * 3.85008 * 8 7 6 31 31 H 1.08999 * 110.70589 * 140.66668 * 9 8 7 32 32 H 1.08996 * 110.70709 * 263.73004 * 9 8 7 33 33 H 0.96698 * 113.99844 * 61.45478 * 11 10 9 34 34 H 0.96999 * 119.99481 * 179.97438 * 15 14 12 35 35 H 1.08998 * 110.37465 * 332.46027 * 20 7 6 36 36 H 1.09003 * 110.37404 * 94.80784 * 20 7 6 37 37 H 1.08008 * 125.89470 * 179.74738 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7043 0.0006 5 6 3.5460 -0.7045 0.0003 6 6 4.7607 -1.5966 0.0003 7 7 5.1549 -1.8872 1.3852 8 6 4.1717 -2.7691 2.0405 9 6 4.9345 -4.0156 2.5361 10 6 6.3984 -3.5121 2.6374 11 8 6.6177 -2.8205 3.8686 12 6 7.3730 -4.6507 2.4801 13 1 8.0768 -4.6499 1.6609 14 6 7.3664 -5.6935 3.3821 15 7 6.5092 -5.6947 4.3796 16 14 8.5740 -7.1051 3.1867 17 1 9.8212 -6.7963 3.9313 18 1 7.9711 -8.3505 3.7259 19 1 8.8898 -7.2908 1.7475 20 6 6.4797 -2.5417 1.4328 21 6 2.2593 -1.1081 -0.0054 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 1.9173 2.1324 0.0004 26 1 4.4166 1.3435 0.0003 27 1 5.5804 -1.0941 -0.5130 28 1 4.5268 -2.5287 -0.5141 29 1 3.7159 -2.2530 2.8855 30 1 3.4038 -3.0642 1.3255 31 1 4.5665 -4.3297 3.5128 32 1 4.8531 -4.8292 1.8153 33 1 6.4824 -3.3659 4.6556 34 1 6.5043 -6.4285 5.0139 35 1 6.6629 -3.0948 0.5116 36 1 7.2632 -1.8012 1.5942 37 1 1.9170 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592523376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:06 Heat of formation + Delta-G solvation = 10.721161 kcal Electronic energy + Delta-G solvation = -18505.070749 eV Core-core repulsion = 15669.399733 eV Total energy + Delta-G solvation = -2835.671016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94177 -38.14282 -34.80734 -32.82700 -32.05955 -30.14130 -28.55144 -27.81344 -26.74908 -24.73376 -23.47461 -20.42020 -19.81128 -19.45283 -19.03284 -16.98758 -16.62145 -15.27332 -15.00038 -14.81752 -14.45026 -14.05974 -13.83107 -13.26776 -12.81019 -12.72435 -12.50087 -12.35649 -12.11252 -11.77681 -11.59851 -11.23845 -11.13698 -10.84183 -10.80957 -10.58613 -10.36284 -10.15602 -9.71991 -9.10798 -8.53797 -8.25412 -8.01559 -7.83370 -7.35955 -6.14660 -4.22656 2.45401 3.09645 3.25799 3.26027 3.32768 3.36105 4.34780 4.69710 5.01861 5.05484 5.13332 5.16054 5.25720 5.33389 5.63063 5.69977 5.87982 6.00355 6.07662 6.18283 6.26635 6.31203 6.44667 6.60925 6.72599 6.81973 7.00220 7.19085 7.25907 7.43973 7.51968 7.56357 7.58214 7.82944 7.90208 8.01167 8.26869 8.79892 9.45928 9.61313 10.92149 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.046490 B = 0.004793 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.133795 B = 5840.217192 C = 5981.332850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.457 5.457 3 C -0.028 4.028 4 C -0.178 4.178 5 C -0.142 4.142 6 C 0.121 3.879 7 N -0.521 5.521 8 C 0.051 3.949 9 C -0.145 4.145 10 C 0.251 3.749 11 O -0.578 6.578 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.058 3.942 21 C -0.015 4.015 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.156 0.844 26 H 0.133 0.867 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.375 0.625 34 H 0.265 0.735 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.000 8.367 -8.017 15.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.134 5.134 3 C -0.157 4.157 4 C -0.203 4.203 5 C -0.149 4.149 6 C -0.008 4.008 7 N -0.245 5.245 8 C -0.077 4.077 9 C -0.184 4.184 10 C 0.211 3.789 11 O -0.386 6.386 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.726 3.274 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.069 4.069 21 C -0.145 4.145 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.173 0.827 26 H 0.151 0.849 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.224 0.776 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.297 9.239 -8.023 16.654 hybrid contribution 0.286 -2.098 -0.076 2.119 sum -11.011 7.141 -8.100 15.422 Atomic orbital electron populations 1.21923 0.77930 1.04015 1.02621 1.43852 1.05716 1.06242 1.57630 1.21698 0.90579 0.91116 1.12325 1.20774 0.95645 0.94660 1.09248 1.19406 0.93151 0.94141 1.08194 1.20526 0.93927 0.95778 0.90571 1.63592 1.02721 1.44248 1.13949 1.22756 0.94033 0.93453 0.97418 1.23258 0.98872 0.94984 1.01304 1.19530 0.90329 0.87361 0.81665 1.86154 1.93042 1.42705 1.16685 1.21584 1.18780 1.04768 1.12198 0.92142 1.24997 0.95268 0.97988 0.94845 1.69755 1.35802 1.33058 1.14871 0.86498 0.81179 0.81278 0.78454 1.20453 1.21177 1.19851 1.22992 0.90040 0.96049 0.97818 1.21614 0.90259 0.91032 1.11553 0.91476 0.90150 0.90232 0.82661 0.84914 0.91025 0.95103 0.92254 0.94839 0.90675 0.92836 0.77587 0.92488 0.93707 0.91262 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.12 59.84 0.67 1.27 16 2 N -0.46 -5.71 3.15 -124.53 -0.39 -6.10 16 3 C -0.03 -0.37 11.43 -16.75 -0.19 -0.56 16 4 C -0.18 -2.70 10.81 -39.78 -0.43 -3.13 16 5 C -0.14 -2.33 5.26 -104.82 -0.55 -2.88 16 6 C 0.12 2.14 5.06 -4.97 -0.03 2.11 16 7 N -0.52 -10.94 5.15 -232.70 -1.20 -12.14 16 8 C 0.05 1.07 6.33 -2.84 -0.02 1.06 16 9 C -0.15 -3.48 5.37 -24.91 -0.13 -3.61 16 10 C 0.25 6.48 0.87 -89.64 -0.08 6.41 16 11 O -0.58 -15.77 13.16 -35.23 -0.46 -16.23 16 12 C -0.53 -14.70 8.27 -34.44 -0.28 -14.98 16 13 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 14 C 0.07 1.92 5.29 -17.82 -0.09 1.83 16 15 N -0.90 -24.39 10.75 55.43 0.60 -23.79 16 16 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.06 1.33 5.86 -2.30 -0.01 1.32 16 21 C -0.01 -0.22 10.46 -16.75 -0.18 -0.39 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.03 0.63 6.21 -51.93 -0.32 0.31 16 31 H 0.07 1.90 7.54 -51.93 -0.39 1.51 16 32 H 0.05 1.30 8.04 -51.93 -0.42 0.88 16 33 H 0.38 10.23 7.56 45.56 0.34 10.58 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.04 0.99 7.70 -51.93 -0.40 0.59 16 36 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.15 2.04 7.61 -52.48 -0.40 1.64 16 LS Contribution 302.77 15.07 4.56 4.56 Total: -1.00 -30.33 302.77 -8.17 -38.50 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -4.92 Total: 10.83 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.33 Total: -11.55 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.99 Total: -42.03 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.46 Total: -16.23 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.33 -8.17 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.219 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds