Wall clock time and date at job start Mon Mar 30 2020 18:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36342 * 125.63916 * 2 1 4 4 C 1.34854 * 108.21823 * 179.97438 * 3 2 1 5 5 C 1.40884 * 107.41932 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.29270 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46996 * 90.02631 * 6 5 4 8 8 C 1.47446 * 111.00255 * 69.87362 * 7 6 5 9 9 C 1.54316 * 107.23320 * 123.25926 * 8 7 6 10 10 C 1.55139 * 103.01810 * 22.28197 * 9 8 7 11 11 O 1.42907 * 110.98769 * 82.47898 * 10 9 8 12 12 C 1.50701 * 110.98859 * 206.25316 * 10 9 8 13 13 H 1.08002 * 120.00020 * 118.55137 * 12 10 9 14 14 C 1.37875 * 120.00433 * 298.54581 * 12 10 9 15 15 N 1.31520 * 119.99680 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 120.00216 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47079 * 90.00331 * 16 14 12 18 18 H 1.48500 * 109.47110 * 210.00151 * 16 14 12 19 19 H 1.48505 * 109.47034 * 330.00349 * 16 14 12 20 20 C 1.47843 * 110.99888 * 190.71812 * 7 6 5 21 21 C 1.34850 * 107.41659 * 0.22394 * 5 4 3 22 22 H 1.08992 * 109.47521 * 89.97439 * 1 2 3 23 23 H 1.09006 * 109.47483 * 209.97870 * 1 2 3 24 24 H 1.09006 * 109.46913 * 329.97025 * 1 2 3 25 25 H 1.07997 * 125.89287 * 0.02562 * 3 2 1 26 26 H 1.07998 * 126.29047 * 179.97438 * 4 3 2 27 27 H 1.08991 * 109.47128 * 330.02545 * 6 5 4 28 28 H 1.08999 * 109.47198 * 210.02019 * 6 5 4 29 29 H 1.08997 * 109.88511 * 242.66682 * 8 7 6 30 30 H 1.08994 * 109.88544 * 3.85008 * 8 7 6 31 31 H 1.08999 * 110.70589 * 140.66668 * 9 8 7 32 32 H 1.08996 * 110.70709 * 263.73004 * 9 8 7 33 33 H 0.96698 * 113.99844 * 61.45478 * 11 10 9 34 34 H 0.96999 * 119.99481 * 179.97438 * 15 14 12 35 35 H 1.08998 * 110.37465 * 332.46027 * 20 7 6 36 36 H 1.09003 * 110.37404 * 94.80784 * 20 7 6 37 37 H 1.08008 * 125.89470 * 179.74738 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7043 0.0006 5 6 3.5460 -0.7045 0.0003 6 6 4.7607 -1.5966 0.0003 7 7 5.1549 -1.8872 1.3852 8 6 4.1717 -2.7691 2.0405 9 6 4.9345 -4.0156 2.5361 10 6 6.3984 -3.5121 2.6374 11 8 6.6177 -2.8205 3.8686 12 6 7.3730 -4.6507 2.4801 13 1 8.0768 -4.6499 1.6609 14 6 7.3664 -5.6935 3.3821 15 7 6.5092 -5.6947 4.3796 16 14 8.5740 -7.1051 3.1867 17 1 9.8212 -6.7963 3.9313 18 1 7.9711 -8.3505 3.7259 19 1 8.8898 -7.2908 1.7475 20 6 6.4797 -2.5417 1.4328 21 6 2.2593 -1.1081 -0.0054 22 1 -0.3634 0.0005 -1.0276 23 1 -0.3634 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5143 25 1 1.9173 2.1324 0.0004 26 1 4.4166 1.3435 0.0003 27 1 5.5804 -1.0941 -0.5130 28 1 4.5268 -2.5287 -0.5141 29 1 3.7159 -2.2530 2.8855 30 1 3.4038 -3.0642 1.3255 31 1 4.5665 -4.3297 3.5128 32 1 4.8531 -4.8292 1.8153 33 1 6.4824 -3.3659 4.6556 34 1 6.5043 -6.4285 5.0139 35 1 6.6629 -3.0948 0.5116 36 1 7.2632 -1.8012 1.5942 37 1 1.9170 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:04 Heat of formation + Delta-G solvation = -10.188637 kcal Electronic energy + Delta-G solvation = -18505.977466 eV Core-core repulsion = 15669.399733 eV Total energy + Delta-G solvation = -2836.577733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.97669 -39.94161 -36.63263 -34.17217 -33.96439 -31.64263 -30.05598 -29.47825 -27.91195 -26.39368 -24.96938 -21.93103 -21.36587 -20.96978 -20.27019 -18.97959 -17.68248 -16.95130 -16.84547 -16.29835 -15.90915 -15.69488 -15.08764 -14.58755 -14.37985 -14.17568 -13.76966 -13.65113 -13.37479 -13.19915 -13.07258 -12.98526 -12.83181 -12.63680 -12.39483 -12.26262 -12.18759 -12.06342 -11.56985 -11.07922 -10.58973 -10.06771 -9.31068 -9.06944 -8.88755 -8.19899 -6.36270 1.41135 1.42409 1.43266 1.52512 2.08639 2.23984 2.39687 3.04359 3.44300 3.99581 4.07837 4.09445 4.17198 4.24792 4.38549 4.46188 4.50873 4.55740 4.59650 4.74531 4.76338 4.81749 4.93466 4.97853 5.10224 5.28788 5.35987 5.50527 5.56163 5.62829 5.81816 6.03413 6.13178 6.28159 6.39480 6.40481 6.64178 6.69873 7.35350 7.47327 8.85420 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.046490 B = 0.004793 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.133795 B = 5840.217192 C = 5981.332850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.455 5.455 3 C -0.016 4.016 4 C -0.211 4.211 5 C -0.173 4.173 6 C 0.124 3.876 7 N -0.528 5.528 8 C 0.065 3.935 9 C -0.135 4.135 10 C 0.234 3.766 11 O -0.589 6.589 12 C -0.563 4.563 13 H 0.055 0.945 14 C 0.031 3.969 15 N -0.912 5.912 16 Si 0.961 3.039 17 H -0.277 1.277 18 H -0.279 1.279 19 H -0.270 1.270 20 C 0.066 3.934 21 C -0.020 4.020 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.190 0.810 26 H 0.131 0.869 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.371 0.629 34 H 0.268 0.732 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.415 8.690 -8.871 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.131 5.131 3 C -0.146 4.146 4 C -0.236 4.236 5 C -0.180 4.180 6 C -0.004 4.004 7 N -0.253 5.253 8 C -0.063 4.063 9 C -0.174 4.174 10 C 0.194 3.806 11 O -0.396 6.396 12 C -0.601 4.601 13 H 0.073 0.927 14 C -0.170 4.170 15 N -0.551 5.551 16 Si 0.786 3.214 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.194 1.194 20 C -0.062 4.062 21 C -0.152 4.152 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.118 0.882 25 H 0.207 0.793 26 H 0.149 0.851 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.219 0.781 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.742 9.576 -8.890 18.251 hybrid contribution 0.667 -2.146 0.186 2.255 sum -12.075 7.429 -8.704 16.636 Atomic orbital electron populations 1.22261 0.75026 1.05539 1.04297 1.44177 1.07504 1.05429 1.55944 1.22173 0.89892 0.92602 1.09958 1.20947 0.97008 0.94371 1.11269 1.19388 0.93276 0.94632 1.10671 1.20516 0.95059 0.96328 0.88509 1.63557 1.01749 1.43602 1.16354 1.22591 0.94134 0.91874 0.97715 1.23062 0.98318 0.95942 1.00088 1.19791 0.91068 0.87936 0.81774 1.86146 1.93244 1.43050 1.17151 1.21839 1.19607 1.05997 1.12668 0.92714 1.25703 0.96745 1.00089 0.94451 1.69842 1.36515 1.33638 1.15089 0.85524 0.78986 0.78414 0.78474 1.20247 1.20461 1.19448 1.22844 0.91160 0.95359 0.96836 1.21763 0.90132 0.92171 1.11095 0.89682 0.89293 0.88180 0.79332 0.85112 0.90753 0.94806 0.93041 0.92432 0.92591 0.93655 0.78126 0.92234 0.93144 0.92149 0.81737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 11.12 127.77 1.42 2.25 16 2 N -0.46 -10.05 3.15 -547.90 -1.72 -11.78 16 3 C -0.02 -0.38 11.43 83.21 0.95 0.58 16 4 C -0.21 -6.16 10.81 22.14 0.24 -5.92 16 5 C -0.17 -5.48 5.26 -19.99 -0.11 -5.58 16 6 C 0.12 4.33 5.06 85.56 0.43 4.77 16 7 N -0.53 -22.12 5.15 -890.12 -4.58 -26.70 16 8 C 0.06 2.69 6.33 86.64 0.55 3.24 16 9 C -0.13 -6.54 5.37 31.77 0.17 -6.37 16 10 C 0.23 12.27 0.87 -10.16 -0.01 12.26 16 11 O -0.59 -32.82 13.16 -148.98 -1.96 -34.78 16 12 C -0.56 -31.29 8.27 25.60 0.21 -31.08 16 13 H 0.05 3.02 7.79 -2.91 -0.02 3.00 16 14 C 0.03 1.66 5.29 84.65 0.45 2.11 16 15 N -0.91 -49.97 10.75 21.45 0.23 -49.74 16 16 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 C 0.07 3.04 5.86 86.77 0.51 3.55 16 21 C -0.02 -0.56 10.46 83.21 0.87 0.32 16 22 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 26 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 27 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 28 H 0.03 1.15 7.96 -2.39 -0.02 1.13 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.10 6.21 -2.39 -0.01 2.09 16 31 H 0.06 2.89 7.54 -2.39 -0.02 2.87 16 32 H 0.04 2.22 8.04 -2.39 -0.02 2.20 16 33 H 0.37 20.79 7.56 -74.06 -0.56 20.23 16 34 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.05 2.24 7.70 -2.39 -0.02 2.22 16 36 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.17 4.00 7.61 -2.91 -0.02 3.97 16 Total: -1.00 -64.63 302.77 0.17 -64.46 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.49 Total: 33.53 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 5.69 Total: -19.89 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -6.08 Total: -88.21 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.96 Total: -34.78 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.63 0.17 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.276 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds