Wall clock time and date at job start Mon Mar 30 2020 18:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50699 * 119.99661 * 2 1 4 4 C 1.53001 * 109.46856 * 125.00358 * 3 2 1 5 5 N 1.46497 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.35314 * 125.86636 * 124.97244 * 5 4 3 7 7 C 1.35360 * 106.17350 * 180.02562 * 6 5 4 8 8 C 1.50703 * 126.75043 * 180.02562 * 7 6 5 9 9 N 1.46492 * 109.47441 * 94.99486 * 8 7 6 10 10 C 1.36937 * 119.99948 * 90.00215 * 9 8 7 11 11 H 1.08004 * 119.99946 * 9.19935 * 10 9 8 12 12 C 1.38813 * 119.99864 * 189.20924 * 10 9 8 13 13 N 1.31614 * 120.00491 * 23.61720 * 12 10 9 14 14 Si 1.86809 * 119.99536 * 203.62756 * 12 10 9 15 15 H 1.48492 * 109.47449 * 84.97772 * 14 12 10 16 16 H 1.48500 * 109.46680 * 204.97871 * 14 12 10 17 17 H 1.48505 * 109.47008 * 324.97228 * 14 12 10 18 18 C 1.46499 * 120.00254 * 270.00005 * 9 8 7 19 19 C 1.52999 * 109.46965 * 84.05555 * 18 9 8 20 20 N 1.33772 * 106.49595 * 359.97438 * 7 6 5 21 21 N 1.28630 * 108.88627 * 0.02562 * 20 7 6 22 22 H 1.07997 * 120.00274 * 0.02562 * 1 2 3 23 23 H 1.08002 * 119.99764 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.99854 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47190 * 4.99837 * 3 2 1 26 26 H 1.09003 * 109.46852 * 244.99863 * 3 2 1 27 27 H 1.08997 * 109.47647 * 59.99759 * 4 3 2 28 28 H 1.09003 * 109.46986 * 299.99423 * 4 3 2 29 29 H 1.07999 * 126.91759 * 0.02562 * 6 5 4 30 30 H 1.09003 * 109.46711 * 215.00184 * 8 7 6 31 31 H 1.09005 * 109.46788 * 334.99273 * 8 7 6 32 32 H 0.96996 * 120.00032 * 179.97438 * 13 12 10 33 33 H 1.09004 * 109.47439 * 204.05700 * 18 9 8 34 34 H 1.08998 * 109.47045 * 324.05574 * 18 9 8 35 35 H 1.09002 * 109.47684 * 299.99765 * 19 18 9 36 36 H 1.08998 * 109.47223 * 60.00128 * 19 18 9 37 37 H 1.09011 * 109.46949 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7679 2.6016 1.1812 6 6 3.8394 3.4762 2.2113 7 6 4.6117 4.5017 1.7822 8 6 4.9932 5.7319 2.5647 9 7 6.2995 5.5245 3.1944 10 6 7.4439 5.8731 2.5281 11 1 7.3830 6.4341 1.6072 12 6 8.6822 5.5052 3.0362 13 7 8.7805 4.4739 3.8479 14 14 10.2091 6.4742 2.5678 15 1 10.3467 7.6470 3.4681 16 1 11.4063 5.6056 2.7000 17 1 10.0882 6.9400 1.1629 18 6 6.3815 4.9443 4.5371 19 6 6.3283 3.4185 4.4374 20 7 4.9706 4.2078 0.5275 21 7 4.4543 3.0758 0.2011 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0895 26 1 2.6213 1.4026 -0.9314 27 1 3.7400 0.5066 1.0921 28 1 2.4773 1.2356 2.1130 29 1 3.3739 3.3762 3.1807 30 1 5.0457 6.5883 1.8923 31 1 4.2444 5.9197 3.3343 32 1 9.6459 4.2167 4.2026 33 1 7.3182 5.2453 5.0065 34 1 5.5439 5.2986 5.1379 35 1 5.3916 3.1174 3.9682 36 1 7.1659 3.0642 3.8367 37 1 6.3898 2.9867 5.4365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593952377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:35 Heat of formation + Delta-G solvation = 146.371959 kcal Electronic energy + Delta-G solvation = -18336.349817 eV Core-core repulsion = 15538.853812 eV Total energy + Delta-G solvation = -2797.496005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.55025 -36.55978 -35.92799 -33.52838 -31.79935 -30.23993 -29.60376 -28.90984 -25.73852 -24.47024 -23.20145 -21.32342 -20.79314 -20.16220 -19.79532 -16.84790 -16.62847 -15.91792 -15.67156 -14.86717 -14.35887 -14.07664 -13.65931 -13.52423 -13.23511 -12.98269 -12.65320 -11.87715 -11.66193 -11.63505 -11.47738 -11.35311 -11.05701 -10.76332 -10.60405 -10.41585 -10.10132 -9.81486 -9.78077 -9.71445 -9.39179 -9.35658 -8.45001 -8.20869 -6.85411 -5.66911 -2.98831 1.87686 2.22534 2.80831 3.34564 3.49049 3.54679 3.57374 4.49886 4.53242 4.62276 4.72134 4.93248 5.06993 5.12004 5.39972 5.43706 5.57000 5.65852 5.68496 5.75626 5.89241 6.14269 6.27414 6.40211 6.56941 6.60575 6.74031 6.92490 6.93411 7.03843 7.15494 7.19574 7.76756 7.85785 8.17680 8.44473 9.24293 9.33679 9.93623 10.37365 11.36988 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.004886 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.653179 B = 5729.712740 C = 5884.522892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 C -0.105 4.105 4 C 0.125 3.875 5 N -0.302 5.302 6 C -0.062 4.062 7 C -0.008 4.008 8 C 0.221 3.779 9 N -0.583 5.583 10 C -0.237 4.237 11 H 0.078 0.922 12 C -0.006 4.006 13 N -0.901 5.901 14 Si 0.900 3.100 15 H -0.289 1.289 16 H -0.295 1.295 17 H -0.281 1.281 18 C 0.166 3.834 19 C -0.151 4.151 20 N -0.254 5.254 21 N -0.105 5.105 22 H 0.097 0.903 23 H 0.100 0.900 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.177 0.823 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.003 0.997 35 H 0.013 0.987 36 H 0.087 0.913 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.446 -7.289 -1.668 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.171 4.171 3 C -0.143 4.143 4 C 0.003 3.997 5 N -0.097 5.097 6 C -0.212 4.212 7 C -0.149 4.149 8 C 0.091 3.909 9 N -0.303 5.303 10 C -0.366 4.366 11 H 0.096 0.904 12 C -0.202 4.202 13 N -0.548 5.548 14 Si 0.731 3.269 15 H -0.216 1.216 16 H -0.221 1.221 17 H -0.206 1.206 18 C 0.041 3.959 19 C -0.211 4.211 20 N -0.121 5.121 21 N -0.084 5.084 22 H 0.115 0.885 23 H 0.118 0.882 24 H 0.132 0.868 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.194 0.806 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.022 0.978 35 H 0.032 0.968 36 H 0.106 0.894 37 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.789 -7.562 -3.021 16.883 hybrid contribution 0.450 -0.046 0.921 1.026 sum -14.340 -7.608 -2.100 16.369 Atomic orbital electron populations 1.23911 0.95865 1.02072 1.00543 1.22807 0.96007 0.97901 1.00420 1.21013 0.98016 0.96303 0.98996 1.21867 0.94405 0.82566 1.00832 1.47247 1.34768 1.17112 1.10556 1.23262 1.08788 0.93213 0.95961 1.23802 0.97127 1.01495 0.92460 1.19311 0.88251 0.90239 0.93080 1.44477 1.00441 1.71434 1.13916 1.19387 0.83625 1.27022 1.06608 0.90428 1.24741 0.97465 0.97431 1.00569 1.70155 1.23063 1.24248 1.37324 0.86293 0.82751 0.79758 0.78094 1.21644 1.22130 1.20615 1.20876 0.99029 0.91427 0.84551 1.22387 1.00566 0.99437 0.98660 1.75041 1.17609 1.05693 1.13805 1.78156 1.08956 1.07792 1.13522 0.88470 0.88206 0.86818 0.90720 0.89042 0.88825 0.88187 0.80569 0.91732 0.92393 0.94009 0.89190 0.97834 0.96752 0.89426 0.96504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 14.32 29.01 0.42 -0.90 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.53 16 3 C -0.11 -1.02 5.78 -27.88 -0.16 -1.19 16 4 C 0.13 1.38 6.44 -4.04 -0.03 1.35 16 5 N -0.30 -4.96 3.44 -61.26 -0.21 -5.17 16 6 C -0.06 -1.07 9.53 -17.04 -0.16 -1.23 16 7 C -0.01 -0.16 6.41 -82.77 -0.53 -0.69 16 8 C 0.22 4.64 6.27 -5.20 -0.03 4.61 16 9 N -0.58 -14.54 2.52 -174.61 -0.44 -14.98 16 10 C -0.24 -6.61 9.71 -15.06 -0.15 -6.75 16 11 H 0.08 2.19 7.92 -52.48 -0.42 1.77 16 12 C -0.01 -0.16 4.93 -17.43 -0.09 -0.24 16 13 N -0.90 -25.83 8.51 55.49 0.47 -25.36 16 14 Si 0.90 22.36 29.62 -169.99 -5.03 17.33 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.17 3.97 5.64 -4.04 -0.02 3.95 16 19 C -0.15 -3.51 9.57 37.16 0.36 -3.16 16 20 N -0.25 -5.84 12.41 33.29 0.41 -5.43 16 21 N -0.11 -2.14 12.91 60.35 0.78 -1.36 16 22 H 0.10 0.67 7.84 -52.49 -0.41 0.26 16 23 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 24 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 25 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 26 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.10 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.18 2.46 7.85 -52.49 -0.41 2.05 16 30 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.06 1.03 7.95 -51.93 -0.41 0.62 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.09 2.41 5.87 -51.93 -0.30 2.11 16 34 H 0.00 0.07 7.98 -51.93 -0.41 -0.34 16 35 H 0.01 0.29 5.43 -51.93 -0.28 0.01 16 36 H 0.09 2.41 6.29 -51.93 -0.33 2.08 16 37 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -32.31 308.67 -5.58 -37.89 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.47 Total: -1.78 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -0.74 Total: -5.78 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 1.01 Total: -52.30 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.31 -5.58 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593952377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.259 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds