Wall clock time and date at job start Mon Mar 30 2020 18:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48498 * 109.47028 * 240.00373 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99982 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.35349 * 126.75364 * 94.71254 * 11 10 9 13 13 N 1.35313 * 106.17218 * 179.85517 * 12 11 10 14 14 C 1.46497 * 125.86667 * 180.18574 * 13 12 11 15 15 C 1.53001 * 109.47264 * 35.29378 * 14 13 12 16 16 C 1.52998 * 109.47598 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47167 * 59.99607 * 16 15 14 18 18 C 1.53001 * 109.47183 * 300.00648 * 17 16 15 19 19 C 1.52993 * 109.47359 * 59.99832 * 18 17 16 20 20 N 1.28710 * 108.26491 * 0.41269 * 13 12 11 21 21 N 1.28635 * 110.18134 * 359.73681 * 20 13 12 22 22 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 23 23 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 25 25 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 26 26 H 1.08001 * 126.90852 * 0.02562 * 12 11 10 27 27 H 1.09002 * 109.47467 * 155.29113 * 14 13 12 28 28 H 1.09008 * 109.46994 * 299.99931 * 15 14 13 29 29 H 1.08998 * 109.47108 * 59.99698 * 15 14 13 30 30 H 1.09002 * 109.47222 * 299.99790 * 16 15 14 31 31 H 1.09001 * 109.47575 * 179.97438 * 16 15 14 32 32 H 1.08997 * 109.47675 * 179.97438 * 17 16 15 33 33 H 1.09008 * 109.46977 * 60.00439 * 17 16 15 34 34 H 1.09002 * 109.46662 * 299.99484 * 18 17 16 35 35 H 1.08998 * 109.47108 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47336 * 180.02562 * 19 18 17 37 37 H 1.09002 * 109.47518 * 60.00175 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 0.6206 -5.4755 -1.0812 13 7 -0.2300 -6.4152 -0.6074 14 6 -0.9686 -7.3895 -1.4144 15 6 -0.1087 -7.8236 -2.6032 16 6 -0.8803 -8.8407 -3.4464 17 6 -2.1733 -8.2026 -3.9582 18 6 -3.0331 -7.7686 -2.7695 19 6 -2.2616 -6.7515 -1.9264 20 7 -0.2823 -6.3028 0.6737 21 7 0.4869 -5.3498 1.0674 22 1 -0.4849 0.8400 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 2.6847 -3.7145 -0.8895 25 1 2.6847 -3.7145 0.8905 26 1 0.8834 -5.2999 -2.1139 27 1 -1.2094 -8.2594 -0.8034 28 1 0.1321 -6.9536 -3.2143 29 1 0.8126 -8.2777 -2.2385 30 1 -1.1215 -9.7107 -2.8356 31 1 -0.2679 -9.1496 -4.2936 32 1 -2.7228 -8.9270 -4.5594 33 1 -1.9321 -7.3326 -4.5691 34 1 -3.2743 -8.6386 -2.1587 35 1 -3.9545 -7.3144 -3.1341 36 1 -2.8740 -6.4426 -1.0792 37 1 -2.0204 -5.8815 -2.5371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594643974.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:39 Heat of formation + Delta-G solvation = 91.205237 kcal Electronic energy + Delta-G solvation = -18073.496969 eV Core-core repulsion = 15273.608756 eV Total energy + Delta-G solvation = -2799.888213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.91821 -38.88041 -34.97468 -33.77705 -31.82159 -31.24551 -29.83722 -29.64525 -25.82942 -23.90352 -23.15186 -22.70527 -21.37064 -20.51429 -19.93869 -17.51607 -16.93944 -15.97640 -15.42107 -14.75996 -14.66195 -14.53454 -14.31152 -13.66508 -13.44705 -13.21203 -12.85434 -12.65992 -12.56732 -12.03102 -11.66153 -11.57865 -11.19555 -11.09317 -10.87693 -10.84383 -10.75578 -10.70125 -10.29855 -10.08734 -9.77235 -9.59955 -8.83616 -8.74351 -6.87270 -5.69886 -2.99302 1.94482 2.51910 3.00642 3.48989 3.53029 3.54511 4.08129 4.25123 4.45038 4.57875 4.66856 4.73906 4.79396 4.90942 4.98056 5.03382 5.17700 5.34654 5.35664 5.51943 5.58275 5.60708 5.64811 5.68987 5.71568 5.79856 5.84701 5.96190 6.04404 6.23188 6.49116 6.73212 6.83752 6.92955 7.74323 8.47517 8.95394 9.59092 10.15589 10.51785 11.52955 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.033243 B = 0.004370 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.085576 B = 6406.220759 C = 6686.736348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.007 4.007 12 C -0.043 4.043 13 N -0.293 5.293 14 C 0.149 3.851 15 C -0.130 4.130 16 C -0.113 4.113 17 C -0.126 4.126 18 C -0.114 4.114 19 C -0.132 4.132 20 N -0.099 5.099 21 N -0.257 5.257 22 H 0.255 0.745 23 H 0.385 0.615 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.185 0.815 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 -19.788 -9.979 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.146 4.146 12 C -0.194 4.194 13 N -0.087 5.087 14 C 0.047 3.953 15 C -0.169 4.169 16 C -0.152 4.152 17 C -0.163 4.163 18 C -0.152 4.152 19 C -0.171 4.171 20 N -0.078 5.078 21 N -0.124 5.124 22 H 0.065 0.935 23 H 0.219 0.781 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.202 0.798 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.305 -20.223 -8.654 22.415 hybrid contribution 0.469 1.331 -1.035 1.750 sum -3.836 -18.893 -9.689 21.576 Atomic orbital electron populations 1.69674 1.05187 1.25712 1.57561 1.24751 0.95500 0.97680 1.02956 0.86234 0.78466 0.83421 0.77859 1.21256 1.21744 1.21189 1.19201 0.91073 0.83881 1.42948 0.90950 1.42305 1.05982 0.99268 1.89499 1.18931 0.90091 0.81436 0.99138 1.22451 1.02766 1.00852 0.88488 1.23278 0.99163 0.95070 1.01877 1.47451 1.30394 1.24386 1.06501 1.21633 0.91741 0.90220 0.91678 1.21944 0.98577 1.00721 0.95635 1.21487 0.96510 0.97696 0.99466 1.21624 0.95948 1.00983 0.97743 1.21493 0.98443 0.98706 0.96588 1.21976 0.94865 0.99342 1.00871 1.78232 1.19717 1.17209 0.92613 1.75080 1.06635 1.04301 1.26390 0.93497 0.78116 0.94583 0.94408 0.79830 0.87342 0.90303 0.90612 0.91431 0.90885 0.91435 0.91446 0.91459 0.90932 0.90540 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.06 55.49 0.72 -28.46 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.55 5.59 -61.08 -0.34 -19.89 16 10 C 0.23 5.10 6.82 -5.20 -0.04 5.06 16 11 C -0.01 -0.15 6.61 -82.78 -0.55 -0.70 16 12 C -0.04 -0.69 10.62 -17.05 -0.18 -0.87 16 13 N -0.29 -4.41 3.25 -54.76 -0.18 -4.59 16 14 C 0.15 1.53 3.12 -67.93 -0.21 1.32 16 15 C -0.13 -1.02 4.85 -26.73 -0.13 -1.15 16 16 C -0.11 -0.66 5.92 -26.73 -0.16 -0.82 16 17 C -0.13 -0.75 5.92 -26.73 -0.16 -0.90 16 18 C -0.11 -0.78 5.92 -26.73 -0.16 -0.94 16 19 C -0.13 -1.28 5.53 -26.73 -0.15 -1.42 16 20 N -0.10 -1.87 13.16 60.35 0.79 -1.07 16 21 N -0.26 -5.52 12.41 33.29 0.41 -5.11 16 22 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.39 11.19 7.66 -40.82 -0.31 10.88 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.18 2.37 7.31 -52.49 -0.38 1.98 16 27 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.08 0.62 7.18 -51.92 -0.37 0.25 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -33.99 305.15 -6.68 -40.66 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.69 Total: 4.06 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.97 Total: -7.97 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 1.41 Total: -59.12 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.99 -6.68 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594643974.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.867 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds