Wall clock time and date at job start Mon Mar 30 2020 18:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53000 * 109.47242 * 125.29424 * 14 13 12 16 16 C 1.54262 * 110.03200 * 292.16821 * 15 14 13 17 17 C 1.54893 * 104.19449 * 217.10606 * 16 15 14 18 18 C 1.54885 * 102.74906 * 37.94084 * 17 16 15 19 19 C 1.53876 * 110.03235 * 174.99819 * 15 14 13 20 20 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 21 21 N 1.28636 * 110.17920 * 359.73997 * 20 13 12 22 22 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 25 25 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 26 26 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 27 27 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 28 28 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 29 29 H 1.08998 * 110.01665 * 53.61232 * 15 14 13 30 30 H 1.09000 * 110.48772 * 335.78008 * 16 15 14 31 31 H 1.08999 * 110.48675 * 98.42900 * 16 15 14 32 32 H 1.09000 * 110.75399 * 279.62224 * 17 16 15 33 33 H 1.09000 * 110.91742 * 156.32977 * 17 16 15 34 34 H 1.09005 * 110.48697 * 203.38210 * 18 17 16 35 35 H 1.09006 * 110.59944 * 80.79273 * 18 17 16 36 36 H 1.08997 * 110.03591 * 238.57114 * 19 15 14 37 37 H 1.09003 * 110.03083 * 359.95358 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.6745 -8.8064 -0.8710 16 6 0.7961 -9.1766 -1.1537 17 6 0.7461 -10.6820 -1.5148 18 6 -0.5632 -10.7936 -2.3347 19 6 -1.5389 -9.8344 -1.6219 20 7 -0.2825 -6.2992 0.6943 21 7 0.4867 -5.3442 1.0829 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3880 0.0005 24 1 2.6849 -3.7190 -0.8822 25 1 2.6842 -3.7101 0.8977 26 1 0.8827 -5.3105 -2.0986 27 1 -2.0376 -7.1973 -1.3110 28 1 -0.6593 -7.3202 -2.4305 29 1 -0.8749 -8.8606 0.1990 30 1 1.1813 -8.5959 -1.9919 31 1 1.4071 -9.0175 -0.2652 32 1 0.6913 -11.2936 -0.6143 33 1 1.6066 -10.9657 -2.1208 34 1 -0.9443 -11.8145 -2.3080 35 1 -0.3994 -10.4753 -3.3643 36 1 -2.1580 -10.3882 -0.9162 37 1 -2.1686 -9.3291 -2.3541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594651885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:00 Heat of formation + Delta-G solvation = 93.947348 kcal Electronic energy + Delta-G solvation = -17784.730308 eV Core-core repulsion = 14984.961001 eV Total energy + Delta-G solvation = -2799.769306 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.87384 -38.76116 -35.10799 -34.04557 -31.77547 -30.35636 -29.70899 -29.03166 -25.88480 -25.59938 -22.78811 -21.65285 -21.14008 -20.75065 -19.62722 -17.50523 -16.97917 -16.22691 -15.75841 -15.28555 -14.60230 -14.44421 -14.05430 -13.70972 -13.65359 -13.08206 -12.87967 -12.51041 -11.98819 -11.63792 -11.48782 -11.40735 -11.37258 -11.18725 -10.99035 -10.85989 -10.80209 -10.76163 -10.34437 -10.02603 -9.79192 -9.62088 -8.85107 -8.75103 -6.87654 -5.70675 -3.00071 1.94477 2.55522 3.00098 3.47711 3.53154 3.55674 4.12622 4.16732 4.27315 4.58258 4.66358 4.82272 4.86975 4.94461 5.07158 5.17580 5.28729 5.33939 5.36100 5.41017 5.51611 5.55388 5.58757 5.69363 5.74061 5.85792 5.93370 5.96522 6.06554 6.22479 6.48605 6.72603 6.82579 6.90262 7.74783 8.46739 8.94451 9.58446 10.14904 10.50902 11.52255 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.057573 B = 0.003678 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.222741 B = 7610.925461 C = 7709.986992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.007 4.007 12 C -0.045 4.045 13 N -0.295 5.295 14 C 0.124 3.876 15 C -0.106 4.106 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.117 4.117 20 N -0.096 5.096 21 N -0.257 5.257 22 H 0.254 0.746 23 H 0.385 0.615 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.186 0.814 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -22.651 -7.494 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.145 4.145 12 C -0.196 4.196 13 N -0.089 5.089 14 C 0.003 3.997 15 C -0.125 4.125 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.155 4.155 20 N -0.075 5.075 21 N -0.124 5.124 22 H 0.064 0.936 23 H 0.219 0.781 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.203 0.797 27 H 0.114 0.886 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.029 -23.087 -6.200 23.991 hybrid contribution 0.390 1.343 -1.118 1.790 sum -1.639 -21.744 -7.318 23.001 Atomic orbital electron populations 1.69699 1.05175 1.25481 1.57726 1.24764 0.95526 0.97722 1.03022 0.86084 0.78774 0.84009 0.77124 1.20462 1.21939 1.21874 1.19290 0.91128 0.83853 1.42651 0.90839 1.42331 1.06003 0.99306 1.89459 1.18931 0.90094 0.81441 0.99138 1.22445 1.02713 1.00865 0.88503 1.23390 0.99066 0.95237 1.01917 1.47265 1.30670 1.24240 1.06754 1.22238 0.96921 0.86426 0.94154 1.22126 0.96313 0.92119 1.01966 1.22440 0.95404 0.96276 1.01678 1.22486 0.97609 0.96161 0.99915 1.22367 0.95372 0.99327 0.99164 1.22140 0.97697 0.96405 0.99275 1.78197 1.19717 1.16848 0.92740 1.75091 1.06704 1.04272 1.26351 0.93597 0.78115 0.94564 0.94417 0.79673 0.88630 0.87919 0.89042 0.91446 0.91485 0.91421 0.91467 0.91568 0.91496 0.91076 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.06 55.49 0.72 -28.43 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.73 -19.47 5.59 -61.09 -0.34 -19.81 16 10 C 0.23 5.05 6.82 -5.19 -0.04 5.01 16 11 C -0.01 -0.14 6.61 -82.78 -0.55 -0.69 16 12 C -0.05 -0.71 11.50 -17.04 -0.20 -0.90 16 13 N -0.30 -4.26 3.26 -61.27 -0.20 -4.46 16 14 C 0.12 1.16 5.51 -4.05 -0.02 1.14 16 15 C -0.11 -0.90 2.99 -89.50 -0.27 -1.17 16 16 C -0.12 -1.05 6.19 -25.07 -0.16 -1.20 16 17 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 18 C -0.12 -0.74 6.83 -25.07 -0.17 -0.91 16 19 C -0.12 -0.74 6.46 -25.61 -0.17 -0.90 16 20 N -0.10 -1.74 12.82 60.35 0.77 -0.96 16 21 N -0.26 -5.41 12.41 33.29 0.41 -5.00 16 22 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.39 11.14 7.66 -40.82 -0.31 10.83 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 0.71 7.93 -51.93 -0.41 0.30 16 29 H 0.09 0.95 7.99 -51.93 -0.41 0.53 16 30 H 0.07 0.57 7.76 -51.93 -0.40 0.17 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.36 7.67 -51.93 -0.40 -0.03 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -34.07 309.81 -6.68 -40.75 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.71 Total: 3.65 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.98 Total: -8.18 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 1.37 Total: -58.66 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.07 -6.68 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.695 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds