Wall clock time and date at job start Mon Mar 30 2020 18:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.35352 * 126.75361 * 94.71485 * 11 10 9 13 13 N 1.35317 * 106.17693 * 179.84844 * 12 11 10 14 14 C 1.46491 * 125.87029 * 180.18381 * 13 12 11 15 15 C 1.53000 * 109.47242 * 125.29424 * 14 13 12 16 16 C 1.54262 * 110.03200 * 292.16821 * 15 14 13 17 17 C 1.54893 * 104.19449 * 217.10606 * 16 15 14 18 18 C 1.54885 * 102.74906 * 37.94084 * 17 16 15 19 19 C 1.53876 * 110.03235 * 174.99819 * 15 14 13 20 20 N 1.28721 * 108.25949 * 0.41126 * 13 12 11 21 21 N 1.28636 * 110.17920 * 359.73997 * 20 13 12 22 22 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 25 25 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 26 26 H 1.08002 * 126.90994 * 359.97438 * 12 11 10 27 27 H 1.08997 * 109.47170 * 245.29472 * 14 13 12 28 28 H 1.08999 * 109.46977 * 5.29533 * 14 13 12 29 29 H 1.08998 * 110.01665 * 53.61232 * 15 14 13 30 30 H 1.09000 * 110.48772 * 335.78008 * 16 15 14 31 31 H 1.08999 * 110.48675 * 98.42900 * 16 15 14 32 32 H 1.09000 * 110.75399 * 279.62224 * 17 16 15 33 33 H 1.09000 * 110.91742 * 156.32977 * 17 16 15 34 34 H 1.09005 * 110.48697 * 203.38210 * 18 17 16 35 35 H 1.09006 * 110.59944 * 80.79273 * 18 17 16 36 36 H 1.08997 * 110.03591 * 238.57114 * 19 15 14 37 37 H 1.09003 * 110.03083 * 359.95358 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6204 -5.4811 -1.0649 13 7 -0.2302 -6.4183 -0.5863 14 6 -0.9688 -7.3968 -1.3882 15 6 -0.6745 -8.8064 -0.8710 16 6 0.7961 -9.1766 -1.1537 17 6 0.7461 -10.6820 -1.5148 18 6 -0.5632 -10.7936 -2.3347 19 6 -1.5389 -9.8344 -1.6219 20 7 -0.2825 -6.2992 0.6943 21 7 0.4867 -5.3442 1.0829 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3880 0.0005 24 1 2.6849 -3.7190 -0.8822 25 1 2.6842 -3.7101 0.8977 26 1 0.8827 -5.3105 -2.0986 27 1 -2.0376 -7.1973 -1.3110 28 1 -0.6593 -7.3202 -2.4305 29 1 -0.8749 -8.8606 0.1990 30 1 1.1813 -8.5959 -1.9919 31 1 1.4071 -9.0175 -0.2652 32 1 0.6913 -11.2936 -0.6143 33 1 1.6066 -10.9657 -2.1208 34 1 -0.9443 -11.8145 -2.3080 35 1 -0.3994 -10.4753 -3.3643 36 1 -2.1580 -10.3882 -0.9162 37 1 -2.1686 -9.3291 -2.3541 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594651885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:22:58 Heat of formation + Delta-G solvation = 71.080068 kcal Electronic energy + Delta-G solvation = -17785.721907 eV Core-core repulsion = 14984.961001 eV Total energy + Delta-G solvation = -2800.760906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -44.19107 -39.41834 -36.85227 -35.36765 -33.63017 -31.63369 -31.04441 -29.60383 -27.60220 -26.57416 -24.77015 -22.86081 -22.25338 -21.49374 -20.45551 -19.32165 -18.32132 -17.41992 -16.62520 -16.48396 -16.01579 -15.68920 -15.50847 -15.15589 -14.70794 -14.32778 -14.24268 -13.75404 -13.35493 -13.02906 -12.80245 -12.49755 -12.36500 -12.11469 -12.03069 -11.97572 -11.96619 -11.85865 -11.78870 -11.57200 -11.32349 -10.97222 -10.87479 -10.16496 -9.01928 -7.93216 -5.23823 0.68618 1.46455 1.51114 1.52128 1.55087 1.62600 2.59927 3.35298 3.39807 3.52224 3.58074 3.67374 3.93735 4.09667 4.21730 4.24449 4.28069 4.28473 4.51248 4.52843 4.60232 4.69893 4.79627 4.82361 4.89763 4.97397 5.07212 5.16991 5.20607 5.23645 5.29939 5.39751 5.47265 5.51286 5.75742 6.26676 7.33215 7.57055 8.04506 8.30778 9.31071 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.057573 B = 0.003678 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.222741 B = 7610.925461 C = 7709.986992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.290 1.290 6 H -0.297 1.297 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.740 5.740 10 C 0.236 3.764 11 C -0.041 4.041 12 C -0.022 4.022 13 N -0.278 5.278 14 C 0.111 3.889 15 C -0.102 4.102 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.112 4.112 20 N -0.112 5.112 21 N -0.304 5.304 22 H 0.251 0.749 23 H 0.370 0.630 24 H 0.063 0.937 25 H 0.026 0.974 26 H 0.226 0.774 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -23.670 -9.702 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.217 1.217 6 H -0.224 1.224 7 C -0.375 4.375 8 H 0.103 0.897 9 N -0.382 5.382 10 C 0.108 3.892 11 C -0.180 4.180 12 C -0.174 4.174 13 N -0.072 5.072 14 C -0.008 4.008 15 C -0.121 4.121 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.150 4.150 20 N -0.091 5.091 21 N -0.171 5.171 22 H 0.059 0.941 23 H 0.201 0.799 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.243 0.757 27 H 0.127 0.873 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.693 -24.167 -8.404 25.643 hybrid contribution 0.284 1.504 -0.456 1.598 sum -1.409 -22.663 -8.860 24.374 Atomic orbital electron populations 1.69871 1.06927 1.26017 1.59631 1.25663 0.96408 1.01402 1.03589 0.84974 0.78365 0.79247 0.76548 1.18515 1.21749 1.22443 1.19755 0.91823 0.84806 1.41077 0.89734 1.42542 1.05480 1.00741 1.89465 1.18951 0.90389 0.80327 0.99485 1.22290 1.04129 1.01710 0.89839 1.23839 0.97334 0.93665 1.02561 1.47666 1.29570 1.24001 1.05976 1.22826 0.97318 0.85455 0.95189 1.22070 0.96758 0.92412 1.00871 1.22439 0.95070 0.97827 1.00645 1.22484 0.98802 0.94702 1.00100 1.22367 0.94283 0.99800 0.99326 1.22128 0.97544 0.95838 0.99465 1.78093 1.19796 1.16568 0.94672 1.75018 1.08222 1.05759 1.28078 0.94071 0.79864 0.91945 0.95567 0.75711 0.87265 0.84305 0.91537 0.90731 0.94298 0.91986 0.90786 0.90668 0.90394 0.90965 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.82 13.06 21.65 0.28 -61.53 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.24 -13.94 9.99 84.03 0.84 -13.10 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.74 -39.95 5.59 -347.18 -1.94 -41.89 16 10 C 0.24 10.20 6.82 85.63 0.58 10.79 16 11 C -0.04 -1.60 6.61 41.60 0.28 -1.32 16 12 C -0.02 -0.64 11.50 83.49 0.96 0.32 16 13 N -0.28 -7.59 3.26 -347.75 -1.13 -8.73 16 14 C 0.11 1.77 5.51 86.38 0.48 2.24 16 15 C -0.10 -1.56 2.99 -10.07 -0.03 -1.59 16 16 C -0.12 -1.97 6.19 31.67 0.20 -1.77 16 17 C -0.12 -1.51 6.91 31.88 0.22 -1.29 16 18 C -0.12 -1.07 6.83 31.67 0.22 -0.85 16 19 C -0.11 -1.09 6.46 31.32 0.20 -0.89 16 20 N -0.11 -4.09 12.82 37.02 0.47 -3.61 16 21 N -0.30 -13.10 12.41 -48.60 -0.60 -13.70 16 22 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 23 H 0.37 21.88 7.66 -92.71 -0.71 21.17 16 24 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.23 4.57 8.06 -2.91 -0.02 4.54 16 27 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.14 1.27 7.93 -2.39 -0.02 1.25 16 29 H 0.07 1.37 7.99 -2.39 -0.02 1.35 16 30 H 0.07 1.08 7.76 -2.39 -0.02 1.06 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 0.57 7.67 -2.39 -0.02 0.55 16 Total: -1.00 -75.34 309.81 3.86 -71.48 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.34 Total: 20.67 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.41 Total: -11.64 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -2.92 Total: -129.46 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -75.34 3.86 -71.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594651885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.564 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds