Wall clock time and date at job start Mon Mar 30 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46891 * 109.47211 * 2 1 4 4 C 1.46900 * 111.00342 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47813 * 179.97438 * 4 3 2 6 6 C 1.35351 * 126.74969 * 94.99481 * 5 4 3 7 7 N 1.35307 * 106.17484 * 180.02562 * 6 5 4 8 8 C 1.46503 * 125.86823 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47268 * 123.57167 * 8 7 6 10 10 C 1.50696 * 115.55020 * 279.11493 * 9 8 7 11 11 H 1.08001 * 119.99983 * 144.78433 * 10 9 8 12 12 C 1.37873 * 120.00101 * 324.79304 * 10 9 8 13 13 N 1.31513 * 120.00034 * 341.00722 * 12 10 9 14 14 Si 1.86804 * 120.00246 * 161.01780 * 12 10 9 15 15 H 1.48498 * 109.47203 * 59.99408 * 14 12 10 16 16 H 1.48496 * 109.47102 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46661 * 299.99479 * 14 12 10 18 18 C 1.52999 * 117.49728 * 133.40596 * 9 8 7 19 19 C 1.52998 * 60.00022 * 252.51006 * 18 9 8 20 20 N 1.28711 * 108.26520 * 0.02562 * 7 6 5 21 21 N 1.28635 * 110.17615 * 359.72161 * 20 7 6 22 22 H 1.08993 * 109.47141 * 59.99821 * 1 2 3 23 23 H 1.08996 * 109.47161 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46448 * 299.99359 * 1 2 3 25 25 H 1.09000 * 109.46702 * 240.00163 * 2 1 3 26 26 H 1.09001 * 109.47521 * 120.00671 * 2 1 3 27 27 H 1.00900 * 111.00584 * 303.96072 * 3 2 1 28 28 H 1.09003 * 109.47265 * 300.00641 * 4 3 2 29 29 H 1.09008 * 109.46815 * 59.99960 * 4 3 2 30 30 H 1.07998 * 126.91228 * 359.97438 * 6 5 4 31 31 H 1.09008 * 109.46916 * 243.57158 * 8 7 6 32 32 H 1.08993 * 109.46817 * 3.56963 * 8 7 6 33 33 H 0.97001 * 120.00216 * 185.01889 * 13 12 10 34 34 H 1.09001 * 117.50018 * 0.02562 * 18 9 8 35 35 H 1.09004 * 117.49345 * 145.02202 * 18 9 8 36 36 H 1.09003 * 117.50143 * 252.50446 * 19 18 9 37 37 H 1.09007 * 117.49530 * 107.49351 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9526 2.8578 -0.0012 6 6 4.2924 3.5995 1.0788 7 7 4.6426 4.8174 0.6046 8 6 5.0865 5.9573 1.4108 9 6 6.4600 6.4227 0.9234 10 6 7.6340 5.6249 1.4297 11 1 8.4907 5.4614 0.7927 12 6 7.6143 5.1037 2.7059 13 7 6.7827 5.5890 3.6017 14 14 8.7691 3.7083 3.1629 15 1 10.1751 4.1482 2.9766 16 1 8.5527 3.3316 4.5829 17 1 8.4977 2.5361 2.2924 18 6 6.6636 7.9245 0.7136 19 6 6.5511 6.9917 -0.4939 20 7 4.5187 4.8024 -0.6764 21 7 4.1141 3.6464 -1.0696 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8935 -0.5139 0.8899 27 1 1.6442 1.9013 -0.7813 28 1 3.8655 0.9200 0.8891 29 1 3.8647 0.9203 -0.8909 30 1 4.2847 3.2831 2.1114 31 1 4.3702 6.7731 1.3120 32 1 5.1543 5.6581 2.4567 33 1 6.8185 5.2732 4.5181 34 1 5.8191 8.5810 0.9232 35 1 7.6469 8.3358 0.9419 36 1 7.4604 6.7894 -1.0601 37 1 5.6325 7.0346 -1.0791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594652629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:10 Heat of formation + Delta-G solvation = 117.610828 kcal Electronic energy + Delta-G solvation = -18310.512825 eV Core-core repulsion = 15511.769644 eV Total energy + Delta-G solvation = -2798.743181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.41484 -37.07017 -36.47068 -33.11696 -32.44698 -31.67576 -29.28091 -26.95069 -25.67027 -24.91964 -22.08119 -21.49856 -21.14654 -20.60545 -19.22073 -16.76330 -16.07491 -15.75063 -15.47074 -14.90698 -14.69060 -14.43084 -13.99221 -13.77310 -13.19675 -12.79092 -12.60087 -12.07408 -11.85592 -11.65110 -11.62895 -11.23183 -11.10911 -10.99102 -10.80391 -10.59249 -10.31802 -10.15321 -9.93066 -9.40599 -9.02299 -8.86879 -8.57244 -8.32464 -8.26842 -6.34692 -4.30893 2.48534 3.12580 3.15119 3.21233 3.26986 3.36337 4.19050 4.39869 4.74862 4.93895 5.05718 5.15730 5.29554 5.40848 5.43173 5.61582 5.68800 5.76988 5.83099 5.87741 5.90763 6.06161 6.14291 6.27612 6.31936 6.51321 6.69804 6.75989 6.78776 6.98127 7.05831 7.17442 7.27249 7.42163 7.56458 7.70052 8.16594 8.62667 9.26297 9.33692 10.69020 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.006256 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.838731 B = 4474.612211 C = 5271.900299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 N -0.687 5.687 4 C 0.155 3.845 5 C -0.048 4.048 6 C -0.020 4.020 7 N -0.250 5.250 8 C 0.129 3.871 9 C 0.030 3.970 10 C -0.485 4.485 11 H 0.064 0.936 12 C 0.070 3.930 13 N -0.883 5.883 14 Si 0.891 3.109 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.273 1.273 18 C -0.191 4.191 19 C -0.189 4.189 20 N -0.083 5.083 21 N -0.291 5.291 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.345 0.655 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.178 0.822 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.269 0.731 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.229 -7.123 -1.960 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 N -0.319 5.319 4 C 0.024 3.976 5 C -0.187 4.187 6 C -0.174 4.174 7 N -0.041 5.041 8 C 0.010 3.990 9 C 0.029 3.971 10 C -0.522 4.522 11 H 0.082 0.918 12 C -0.132 4.132 13 N -0.521 5.521 14 Si 0.718 3.282 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.230 4.230 19 C -0.227 4.227 20 N -0.063 5.063 21 N -0.158 5.158 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.163 0.837 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.195 0.805 31 H 0.084 0.916 32 H 0.171 0.829 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.212 -6.277 -2.371 10.604 hybrid contribution 0.903 -1.323 0.557 1.696 sum -7.308 -7.599 -1.814 10.698 Atomic orbital electron populations 1.21761 0.95109 1.01431 1.02450 1.21914 0.95586 0.89684 1.00432 1.60534 1.07701 1.13127 1.50580 1.19915 0.87101 0.89333 1.01228 1.21492 1.09190 0.98149 0.89869 1.23219 1.06122 0.86646 1.01386 1.47584 1.38967 1.11681 1.05911 1.22432 0.94992 0.84078 0.97548 1.19030 0.92360 0.91839 0.93910 1.20528 1.01542 1.31222 0.98890 0.91775 1.24947 0.95902 0.96407 0.95927 1.69638 1.38060 1.41745 1.02685 0.86635 0.81205 0.82886 0.77465 1.19942 1.20858 1.19864 1.23038 1.00889 0.95150 1.03894 1.22886 1.01397 1.06691 0.91706 1.78135 1.17896 1.16156 0.94086 1.74899 1.16556 0.97942 1.26387 0.92883 0.92378 0.91824 0.95437 0.91019 0.83734 0.89790 0.93865 0.80451 0.91629 0.82913 0.92086 0.91403 0.89932 0.90593 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.17 37.16 0.38 -0.97 16 2 C 0.05 0.55 6.40 -3.83 -0.02 0.53 16 3 N -0.69 -9.05 6.49 -115.06 -0.75 -9.80 16 4 C 0.15 2.27 6.25 -4.98 -0.03 2.23 16 5 C -0.05 -0.89 6.76 -82.78 -0.56 -1.45 16 6 C -0.02 -0.39 11.50 -17.05 -0.20 -0.59 16 7 N -0.25 -5.41 3.43 -61.26 -0.21 -5.62 16 8 C 0.13 2.84 6.15 -4.04 -0.02 2.82 16 9 C 0.03 0.71 1.93 -155.66 -0.30 0.41 16 10 C -0.48 -12.65 9.00 -34.44 -0.31 -12.96 16 11 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 12 C 0.07 1.78 5.10 -17.82 -0.09 1.69 16 13 N -0.88 -22.22 10.93 55.43 0.61 -21.62 16 14 Si 0.89 19.97 29.58 -169.99 -5.03 14.94 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C -0.19 -4.15 9.88 -26.73 -0.26 -4.41 16 19 C -0.19 -4.17 9.16 -26.73 -0.24 -4.41 16 20 N -0.08 -1.87 11.58 60.35 0.70 -1.17 16 21 N -0.29 -6.20 12.41 33.29 0.41 -5.79 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.34 4.65 8.72 -39.29 -0.34 4.30 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 30 H 0.18 3.09 8.06 -52.49 -0.42 2.67 16 31 H 0.07 1.34 7.94 -51.92 -0.41 0.93 16 32 H 0.15 3.54 5.17 -51.93 -0.27 3.27 16 33 H 0.27 6.45 8.32 -40.82 -0.34 6.11 16 34 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 35 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 36 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 37 H 0.08 1.77 7.47 -51.93 -0.39 1.38 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -27.20 312.96 -6.83 -34.03 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.61 Total: 7.43 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -1.67 Total: -17.12 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.76 Total: -43.99 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.20 -6.83 -34.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594652629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.637 kcal (2) G-P(sol) polarization free energy of solvation -27.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds