Wall clock time and date at job start Mon Mar 30 2020 18:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46891 * 109.47211 * 2 1 4 4 C 1.46900 * 111.00342 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47813 * 179.97438 * 4 3 2 6 6 C 1.35351 * 126.74969 * 94.99481 * 5 4 3 7 7 N 1.35307 * 106.17484 * 180.02562 * 6 5 4 8 8 C 1.46503 * 125.86823 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47268 * 123.57167 * 8 7 6 10 10 C 1.50696 * 115.55020 * 279.11493 * 9 8 7 11 11 H 1.08001 * 119.99983 * 144.78433 * 10 9 8 12 12 C 1.37873 * 120.00101 * 324.79304 * 10 9 8 13 13 N 1.31513 * 120.00034 * 341.00722 * 12 10 9 14 14 Si 1.86804 * 120.00246 * 161.01780 * 12 10 9 15 15 H 1.48498 * 109.47203 * 59.99408 * 14 12 10 16 16 H 1.48496 * 109.47102 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46661 * 299.99479 * 14 12 10 18 18 C 1.52999 * 117.49728 * 133.40596 * 9 8 7 19 19 C 1.52998 * 60.00022 * 252.51006 * 18 9 8 20 20 N 1.28711 * 108.26520 * 0.02562 * 7 6 5 21 21 N 1.28635 * 110.17615 * 359.72161 * 20 7 6 22 22 H 1.08993 * 109.47141 * 59.99821 * 1 2 3 23 23 H 1.08996 * 109.47161 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46448 * 299.99359 * 1 2 3 25 25 H 1.09000 * 109.46702 * 240.00163 * 2 1 3 26 26 H 1.09001 * 109.47521 * 120.00671 * 2 1 3 27 27 H 1.00900 * 111.00584 * 303.96072 * 3 2 1 28 28 H 1.09003 * 109.47265 * 300.00641 * 4 3 2 29 29 H 1.09008 * 109.46815 * 59.99960 * 4 3 2 30 30 H 1.07998 * 126.91228 * 359.97438 * 6 5 4 31 31 H 1.09008 * 109.46916 * 243.57158 * 8 7 6 32 32 H 1.08993 * 109.46817 * 3.56963 * 8 7 6 33 33 H 0.97001 * 120.00216 * 185.01889 * 13 12 10 34 34 H 1.09001 * 117.50018 * 0.02562 * 18 9 8 35 35 H 1.09004 * 117.49345 * 145.02202 * 18 9 8 36 36 H 1.09003 * 117.50143 * 252.50446 * 19 18 9 37 37 H 1.09007 * 117.49530 * 107.49351 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9526 2.8578 -0.0012 6 6 4.2924 3.5995 1.0788 7 7 4.6426 4.8174 0.6046 8 6 5.0865 5.9573 1.4108 9 6 6.4600 6.4227 0.9234 10 6 7.6340 5.6249 1.4297 11 1 8.4907 5.4614 0.7927 12 6 7.6143 5.1037 2.7059 13 7 6.7827 5.5890 3.6017 14 14 8.7691 3.7083 3.1629 15 1 10.1751 4.1482 2.9766 16 1 8.5527 3.3316 4.5829 17 1 8.4977 2.5361 2.2924 18 6 6.6636 7.9245 0.7136 19 6 6.5511 6.9917 -0.4939 20 7 4.5187 4.8024 -0.6764 21 7 4.1141 3.6464 -1.0696 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8935 -0.5139 0.8899 27 1 1.6442 1.9013 -0.7813 28 1 3.8655 0.9200 0.8891 29 1 3.8647 0.9203 -0.8909 30 1 4.2847 3.2831 2.1114 31 1 4.3702 6.7731 1.3120 32 1 5.1543 5.6581 2.4567 33 1 6.8185 5.2732 4.5181 34 1 5.8191 8.5810 0.9232 35 1 7.6469 8.3358 0.9419 36 1 7.4604 6.7894 -1.0601 37 1 5.6325 7.0346 -1.0791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594652629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:08 Heat of formation + Delta-G solvation = 101.076251 kcal Electronic energy + Delta-G solvation = -18311.229818 eV Core-core repulsion = 15511.769644 eV Total energy + Delta-G solvation = -2799.460174 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.00556 -38.78440 -37.54053 -34.67566 -34.35811 -32.95260 -30.45512 -28.64308 -27.56942 -26.12959 -23.19273 -22.94719 -22.80108 -22.13937 -20.98403 -18.52745 -17.62983 -17.08309 -16.85979 -16.67354 -15.87973 -15.81958 -15.51978 -15.13505 -14.82047 -13.98370 -13.82154 -13.77974 -13.37738 -12.95687 -12.84403 -12.75977 -12.50156 -12.39380 -12.33222 -12.03488 -12.02921 -11.79034 -11.62110 -11.23719 -10.79200 -10.60743 -10.17569 -10.03737 -9.36362 -8.25556 -6.27687 0.89796 1.35847 1.41199 1.47862 1.61428 1.75123 2.34236 2.85546 3.31824 3.57090 3.68581 3.87968 4.10587 4.16426 4.21436 4.31335 4.41572 4.49639 4.55278 4.57303 4.69531 4.71319 4.90045 4.95339 5.00969 5.07754 5.15545 5.22333 5.30699 5.36899 5.41443 5.52290 5.76942 5.93390 6.05700 6.27525 6.39239 6.64792 7.30892 7.72957 8.77089 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.022097 B = 0.006256 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.838731 B = 4474.612211 C = 5271.900299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.693 5.693 4 C 0.159 3.841 5 C -0.039 4.039 6 C -0.032 4.032 7 N -0.257 5.257 8 C 0.136 3.864 9 C 0.008 3.992 10 C -0.514 4.514 11 H 0.043 0.957 12 C 0.045 3.955 13 N -0.892 5.892 14 Si 0.939 3.061 15 H -0.277 1.277 16 H -0.270 1.270 17 H -0.279 1.279 18 C -0.181 4.181 19 C -0.181 4.181 20 N -0.110 5.110 21 N -0.308 5.308 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.078 0.922 27 H 0.341 0.659 28 H 0.100 0.900 29 H 0.047 0.953 30 H 0.197 0.803 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.274 0.726 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -8.293 -1.372 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.326 5.326 4 C 0.028 3.972 5 C -0.179 4.179 6 C -0.185 4.185 7 N -0.048 5.048 8 C 0.017 3.983 9 C 0.006 3.994 10 C -0.551 4.551 11 H 0.061 0.939 12 C -0.157 4.157 13 N -0.529 5.529 14 Si 0.765 3.235 15 H -0.203 1.203 16 H -0.195 1.195 17 H -0.205 1.205 18 C -0.219 4.219 19 C -0.218 4.218 20 N -0.090 5.090 21 N -0.174 5.174 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.159 0.841 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.214 0.786 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.985 -7.444 -1.787 11.804 hybrid contribution 1.123 -0.993 0.366 1.543 sum -7.862 -8.436 -1.421 11.619 Atomic orbital electron populations 1.21735 0.94014 1.02532 1.02062 1.22013 0.96461 0.88097 1.01080 1.60549 1.06588 1.14912 1.50504 1.19999 0.88200 0.86778 1.02231 1.22110 1.07609 0.99450 0.88756 1.23697 1.06034 0.86167 1.02642 1.47581 1.39247 1.12184 1.05830 1.22244 0.94516 0.84674 0.96891 1.19116 0.92558 0.92774 0.94916 1.20629 1.02056 1.33078 0.99328 0.93855 1.25387 0.97137 0.97500 0.95670 1.69688 1.38415 1.41924 1.02879 0.85903 0.79580 0.80441 0.77609 1.20284 1.19506 1.20465 1.23048 1.01423 0.94476 1.02957 1.22794 1.01192 1.06527 0.91334 1.78101 1.19303 1.17002 0.94547 1.74864 1.16953 0.98148 1.27396 0.92948 0.90540 0.92532 0.94726 0.90329 0.84144 0.88171 0.93453 0.78589 0.90301 0.83871 0.91638 0.89297 0.90478 0.91405 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 10.17 71.98 0.73 -1.56 16 2 C 0.05 0.96 6.40 86.31 0.55 1.51 16 3 N -0.69 -16.98 6.49 -517.93 -3.36 -20.34 16 4 C 0.16 4.34 6.25 85.56 0.53 4.87 16 5 C -0.04 -1.43 6.76 41.60 0.28 -1.15 16 6 C -0.03 -1.22 11.50 83.49 0.96 -0.26 16 7 N -0.26 -10.98 3.43 -347.73 -1.19 -12.18 16 8 C 0.14 5.94 6.15 86.38 0.53 6.47 16 9 C 0.01 0.36 1.93 -52.93 -0.10 0.26 16 10 C -0.51 -26.97 9.00 25.60 0.23 -26.74 16 11 H 0.04 2.38 7.89 -2.91 -0.02 2.36 16 12 C 0.04 2.23 5.10 84.65 0.43 2.66 16 13 N -0.89 -44.01 10.93 21.45 0.23 -43.77 16 14 Si 0.94 40.40 29.58 68.60 2.03 42.43 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 C -0.18 -7.70 9.88 30.59 0.30 -7.40 16 19 C -0.18 -7.94 9.16 30.59 0.28 -7.66 16 20 N -0.11 -4.94 11.58 37.02 0.43 -4.51 16 21 N -0.31 -12.94 12.41 -48.60 -0.60 -13.54 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.34 8.73 8.72 -89.69 -0.78 7.95 16 28 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.20 6.53 8.06 -2.91 -0.02 6.51 16 31 H 0.08 3.15 7.94 -2.38 -0.02 3.13 16 32 H 0.14 6.55 5.17 -2.39 -0.01 6.54 16 33 H 0.27 12.76 8.32 -92.71 -0.77 11.99 16 34 H 0.09 3.38 8.08 -2.39 -0.02 3.36 16 35 H 0.08 3.34 8.14 -2.38 -0.02 3.32 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.09 3.73 7.47 -2.38 -0.02 3.71 16 Total: -1.00 -56.45 312.96 2.55 -53.90 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.28 Total: 27.01 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 4.73 Total: -28.99 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -4.49 Total: -94.34 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -56.45 2.55 -53.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594652629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.976 kcal (2) G-P(sol) polarization free energy of solvation -56.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds