Wall clock time and date at job start Mon Mar 30 2020 18:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47058 * 2 1 4 4 C 1.53001 * 109.47148 * 120.00213 * 2 1 3 5 5 N 1.46499 * 109.46950 * 184.99585 * 4 2 1 6 6 C 1.34435 * 126.82068 * 124.99861 * 5 4 2 7 7 N 1.30823 * 108.07868 * 180.02562 * 6 5 4 8 8 C 1.33248 * 109.83004 * 359.97438 * 7 6 5 9 9 N 1.30712 * 108.94422 * 359.97438 * 8 7 6 10 10 N 1.46907 * 109.46810 * 239.99839 * 2 1 3 11 11 C 1.46898 * 110.99818 * 85.00258 * 10 2 1 12 12 C 1.52995 * 109.47336 * 185.37822 * 11 10 2 13 13 C 1.50698 * 115.55059 * 39.51933 * 12 11 10 14 14 H 1.08006 * 120.00484 * 265.23922 * 13 12 11 15 15 C 1.37885 * 120.00136 * 85.23348 * 13 12 11 16 16 N 1.31517 * 119.99498 * 353.53328 * 15 13 12 17 17 Si 1.86802 * 120.00087 * 173.52836 * 15 13 12 18 18 H 1.48496 * 109.47075 * 60.00476 * 17 15 13 19 19 H 1.48504 * 109.46892 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47171 * 300.00075 * 17 15 13 21 21 C 1.53000 * 117.50069 * 253.81431 * 12 11 10 22 22 C 1.52996 * 59.99987 * 252.50502 * 21 12 11 23 23 H 1.09003 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47255 * 299.99658 * 1 2 3 25 25 H 1.09000 * 109.47580 * 59.99837 * 1 2 3 26 26 H 1.08998 * 109.46899 * 64.99869 * 4 2 1 27 27 H 1.08999 * 109.46922 * 305.00118 * 4 2 1 28 28 H 1.08005 * 125.95615 * 359.77066 * 6 5 4 29 29 H 1.07994 * 125.52916 * 179.97438 * 8 7 6 30 30 H 1.00898 * 111.00068 * 208.95489 * 10 2 1 31 31 H 1.09004 * 109.46957 * 305.37654 * 11 10 2 32 32 H 1.09003 * 109.47460 * 65.37321 * 11 10 2 33 33 H 0.97004 * 119.99712 * 179.97438 * 16 15 13 34 34 H 1.08999 * 117.49384 * 359.97438 * 21 12 11 35 35 H 1.09002 * 117.50042 * 145.01231 * 21 12 11 36 36 H 1.08995 * 117.50086 * 252.50202 * 22 21 12 37 37 H 1.09004 * 117.51493 * 107.47503 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.6180 1.3108 6 6 4.2314 -0.1375 2.3314 7 7 5.4940 -0.2151 1.9979 8 6 5.6079 -0.7380 0.7776 9 7 4.4139 -1.0020 0.3159 10 7 2.0196 -0.6926 -1.1995 11 6 2.0824 0.2225 -2.3469 12 6 2.4664 -0.5610 -3.6037 13 6 1.8383 -1.9243 -3.7369 14 1 2.3713 -2.8001 -3.3970 15 6 0.5831 -2.0539 -4.2926 16 7 -0.1185 -0.9818 -4.5892 17 14 -0.1209 -3.7521 -4.6242 18 1 -0.2135 -4.5072 -3.3488 19 1 -1.4743 -3.6191 -5.2207 20 1 0.7658 -4.4800 -5.5671 21 6 3.8876 -0.3819 -4.1412 22 6 2.7038 0.2359 -4.8880 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7516 -1.7715 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 3.8439 0.2494 3.2623 29 1 6.5362 -0.9150 0.2548 30 1 2.9172 -1.1206 -1.0288 31 1 1.1083 0.6892 -2.4932 32 1 2.8296 0.9931 -2.1567 33 1 -1.0014 -1.0729 -4.9805 34 1 4.5489 0.2945 -3.5997 35 1 4.3687 -1.2504 -4.5911 36 1 2.4061 -0.2261 -5.8293 37 1 2.5860 1.3184 -4.8376 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595048526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:26 Heat of formation + Delta-G solvation = 123.268884 kcal Electronic energy + Delta-G solvation = -18738.305825 eV Core-core repulsion = 15939.807996 eV Total energy + Delta-G solvation = -2798.497829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.99210 -37.41827 -35.91750 -32.92683 -31.71455 -31.19438 -29.93756 -26.63284 -25.44899 -24.17625 -21.97676 -21.79226 -21.00815 -20.17903 -18.90179 -17.22332 -16.08687 -15.89816 -15.07480 -14.87181 -14.51209 -14.25555 -13.93942 -13.30825 -13.18878 -12.65340 -12.42700 -12.17212 -11.84251 -11.68272 -11.22336 -11.05119 -10.84042 -10.81830 -10.55315 -10.38242 -10.03331 -9.91969 -9.74061 -9.54003 -9.32619 -8.71134 -8.22647 -7.91125 -7.33029 -5.83623 -3.82827 1.71375 2.37993 3.02881 3.42049 3.45253 3.49309 4.31863 4.40719 4.56868 4.75142 4.94086 5.20639 5.24375 5.40764 5.45612 5.51371 5.72212 5.77616 6.05961 6.26617 6.27675 6.34271 6.40820 6.50614 6.63263 6.69900 6.74456 6.84277 6.87465 7.04578 7.19497 7.56333 7.57460 8.08012 8.12120 8.13867 8.53521 8.70255 9.12910 9.78512 11.27086 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.006781 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.728476 B = 4128.324602 C = 4503.873914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.033 0.967 4 C 0.122 3.878 5 N -0.374 5.374 6 C 0.245 3.755 7 N -0.552 5.552 8 C 0.193 3.807 9 N -0.302 5.302 10 N -0.656 5.656 11 C 0.115 3.885 12 C 0.053 3.947 13 C -0.458 4.458 14 H 0.055 0.945 15 C 0.072 3.928 16 N -0.886 5.886 17 Si 0.885 3.115 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.281 1.281 21 C -0.216 4.216 22 C -0.160 4.160 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.215 0.785 29 H 0.215 0.785 30 H 0.354 0.646 31 H 0.066 0.934 32 H -0.014 1.014 33 H 0.255 0.745 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 2.977 12.972 13.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.038 4.038 3 H 0.051 0.949 4 C 0.000 4.000 5 N -0.165 5.165 6 C -0.052 4.052 7 N -0.280 5.280 8 C -0.109 4.109 9 N -0.130 5.130 10 N -0.293 5.293 11 C -0.014 4.014 12 C 0.052 3.948 13 C -0.496 4.496 14 H 0.073 0.927 15 C -0.129 4.129 16 N -0.524 5.524 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.253 4.253 22 C -0.198 4.198 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.232 0.768 29 H 0.232 0.768 30 H 0.179 0.821 31 H 0.084 0.916 32 H 0.004 0.996 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.003 2.549 12.225 12.844 hybrid contribution 0.087 -0.181 0.121 0.234 sum 3.089 2.368 12.346 12.946 Atomic orbital electron populations 1.21716 0.93523 1.02863 1.01188 1.21741 0.96660 0.95302 0.90111 0.94945 1.22319 0.72819 1.04198 1.00656 1.50737 1.08252 1.45436 1.12089 1.25997 0.87401 0.96680 0.95141 1.70504 1.18059 1.24054 1.15352 1.26019 0.96897 0.97040 0.90993 1.77887 0.99604 1.23351 1.12154 1.60532 1.35428 1.32009 1.01369 1.21417 0.98161 0.91301 0.90552 1.18828 0.90856 0.95798 0.89321 1.20122 1.00681 0.90126 1.38706 0.92673 1.24840 0.96613 0.95793 0.95672 1.70005 1.11214 1.27655 1.43532 0.86786 0.77897 0.85555 0.78380 1.20389 1.21696 1.20679 1.23049 0.92748 1.02102 1.07422 1.22488 1.01997 0.96458 0.98870 0.91591 0.93636 0.91334 0.88182 0.87932 0.76841 0.76848 0.82128 0.91576 0.99569 0.93555 0.92296 0.90628 0.90116 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.41 37.16 0.35 -1.66 16 2 C 0.07 1.17 2.87 -67.71 -0.19 0.98 16 3 H 0.03 0.54 7.86 -51.93 -0.41 0.13 16 4 C 0.12 1.48 6.11 -4.04 -0.02 1.45 16 5 N -0.37 -5.08 3.69 -62.63 -0.23 -5.31 16 6 C 0.24 2.80 12.63 -90.66 -1.14 1.65 16 7 N -0.55 -7.58 11.19 -15.83 -0.18 -7.76 16 8 C 0.19 2.75 13.03 -91.81 -1.20 1.55 16 9 N -0.30 -4.93 10.01 29.29 0.29 -4.64 16 10 N -0.66 -13.60 5.60 -106.72 -0.60 -14.20 16 11 C 0.11 2.65 5.54 -3.83 -0.02 2.63 16 12 C 0.05 1.33 1.74 -155.66 -0.27 1.06 16 13 C -0.46 -12.67 8.15 -34.44 -0.28 -12.95 16 14 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 15 C 0.07 2.01 5.39 -17.82 -0.10 1.91 16 16 N -0.89 -25.37 12.93 55.43 0.72 -24.66 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 C -0.22 -4.96 9.88 -26.73 -0.26 -5.22 16 22 C -0.16 -3.91 9.45 -26.73 -0.25 -4.16 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 28 H 0.22 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.22 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.35 7.42 5.53 -39.29 -0.22 7.21 16 31 H 0.07 1.65 7.33 -51.93 -0.38 1.27 16 32 H -0.01 -0.31 7.94 -51.93 -0.41 -0.72 16 33 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 311.78 15.07 4.70 4.70 Total: -1.00 -32.13 311.78 -9.28 -41.42 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.57 Total: 6.50 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.40 Total: -12.77 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.00 Total: -56.57 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.13 -9.28 -41.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595048526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.687 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds