Wall clock time and date at job start Mon Mar 30 2020 18:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47058 * 2 1 4 4 C 1.53001 * 109.47148 * 120.00213 * 2 1 3 5 5 N 1.46499 * 109.46950 * 184.99585 * 4 2 1 6 6 C 1.34435 * 126.82068 * 124.99861 * 5 4 2 7 7 N 1.30823 * 108.07868 * 180.02562 * 6 5 4 8 8 C 1.33248 * 109.83004 * 359.97438 * 7 6 5 9 9 N 1.30712 * 108.94422 * 359.97438 * 8 7 6 10 10 N 1.46907 * 109.46810 * 239.99839 * 2 1 3 11 11 C 1.46898 * 110.99818 * 85.00258 * 10 2 1 12 12 C 1.52995 * 109.47336 * 185.37822 * 11 10 2 13 13 C 1.50698 * 115.55059 * 39.51933 * 12 11 10 14 14 H 1.08006 * 120.00484 * 265.23922 * 13 12 11 15 15 C 1.37885 * 120.00136 * 85.23348 * 13 12 11 16 16 N 1.31517 * 119.99498 * 353.53328 * 15 13 12 17 17 Si 1.86802 * 120.00087 * 173.52836 * 15 13 12 18 18 H 1.48496 * 109.47075 * 60.00476 * 17 15 13 19 19 H 1.48504 * 109.46892 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47171 * 300.00075 * 17 15 13 21 21 C 1.53000 * 117.50069 * 253.81431 * 12 11 10 22 22 C 1.52996 * 59.99987 * 252.50502 * 21 12 11 23 23 H 1.09003 * 109.46873 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47255 * 299.99658 * 1 2 3 25 25 H 1.09000 * 109.47580 * 59.99837 * 1 2 3 26 26 H 1.08998 * 109.46899 * 64.99869 * 4 2 1 27 27 H 1.08999 * 109.46922 * 305.00118 * 4 2 1 28 28 H 1.08005 * 125.95615 * 359.77066 * 6 5 4 29 29 H 1.07994 * 125.52916 * 179.97438 * 8 7 6 30 30 H 1.00898 * 111.00068 * 208.95489 * 10 2 1 31 31 H 1.09004 * 109.46957 * 305.37654 * 11 10 2 32 32 H 1.09003 * 109.47460 * 65.37321 * 11 10 2 33 33 H 0.97004 * 119.99712 * 179.97438 * 16 15 13 34 34 H 1.08999 * 117.49384 * 359.97438 * 21 12 11 35 35 H 1.09002 * 117.50042 * 145.01231 * 21 12 11 36 36 H 1.08995 * 117.50086 * 252.50202 * 22 21 12 37 37 H 1.09004 * 117.51493 * 107.47503 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.6180 1.3108 6 6 4.2314 -0.1375 2.3314 7 7 5.4940 -0.2151 1.9979 8 6 5.6079 -0.7380 0.7776 9 7 4.4139 -1.0020 0.3159 10 7 2.0196 -0.6926 -1.1995 11 6 2.0824 0.2225 -2.3469 12 6 2.4664 -0.5610 -3.6037 13 6 1.8383 -1.9243 -3.7369 14 1 2.3713 -2.8001 -3.3970 15 6 0.5831 -2.0539 -4.2926 16 7 -0.1185 -0.9818 -4.5892 17 14 -0.1209 -3.7521 -4.6242 18 1 -0.2135 -4.5072 -3.3488 19 1 -1.4743 -3.6191 -5.2207 20 1 0.7658 -4.4800 -5.5671 21 6 3.8876 -0.3819 -4.1412 22 6 2.7038 0.2359 -4.8880 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7516 -1.7715 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 3.8439 0.2494 3.2623 29 1 6.5362 -0.9150 0.2548 30 1 2.9172 -1.1206 -1.0288 31 1 1.1083 0.6892 -2.4932 32 1 2.8296 0.9931 -2.1567 33 1 -1.0014 -1.0729 -4.9805 34 1 4.5489 0.2945 -3.5997 35 1 4.3687 -1.2504 -4.5911 36 1 2.4061 -0.2261 -5.8293 37 1 2.5860 1.3184 -4.8376 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595048526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:25 Heat of formation + Delta-G solvation = 104.520736 kcal Electronic energy + Delta-G solvation = -18739.118806 eV Core-core repulsion = 15939.807996 eV Total energy + Delta-G solvation = -2799.310810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.96626 -39.04724 -37.46946 -34.14510 -33.83042 -32.21654 -31.32142 -27.73634 -27.49025 -25.87454 -23.01486 -22.90746 -22.79927 -21.46276 -20.85362 -18.18245 -17.95776 -17.18896 -16.59419 -16.25958 -16.04556 -15.72043 -15.06839 -15.05307 -14.69080 -14.01806 -13.77686 -13.57486 -13.45002 -13.12315 -12.83447 -12.73130 -12.62539 -12.36872 -12.31011 -12.09288 -11.87977 -11.29128 -10.94251 -10.77620 -10.73649 -10.55568 -10.31441 -9.87298 -8.92115 -7.97207 -6.01492 0.77151 1.44623 1.45421 1.47228 1.52183 2.05387 2.51452 3.30514 3.35370 3.49808 3.55604 3.62377 4.03763 4.06941 4.20848 4.35085 4.43592 4.50600 4.58610 4.66896 4.72169 4.80998 4.87830 4.96839 5.09550 5.16037 5.25866 5.31349 5.45104 5.51227 5.61443 5.69226 5.89863 5.99430 6.42633 6.62618 6.95560 7.01175 7.18065 7.61901 9.12525 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.023026 B = 0.006781 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.728476 B = 4128.324602 C = 4503.873914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.070 3.930 3 H 0.028 0.972 4 C 0.128 3.872 5 N -0.384 5.384 6 C 0.261 3.739 7 N -0.576 5.576 8 C 0.191 3.809 9 N -0.354 5.354 10 N -0.674 5.674 11 C 0.133 3.867 12 C 0.027 3.973 13 C -0.467 4.467 14 H 0.042 0.958 15 C 0.030 3.970 16 N -0.910 5.910 17 Si 0.941 3.059 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.193 4.193 22 C -0.165 4.165 23 H 0.054 0.946 24 H 0.091 0.909 25 H 0.031 0.969 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.267 0.733 29 H 0.232 0.768 30 H 0.352 0.648 31 H 0.039 0.961 32 H -0.013 1.013 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 3.035 15.199 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.041 4.041 3 H 0.046 0.954 4 C 0.007 3.993 5 N -0.175 5.175 6 C -0.035 4.035 7 N -0.304 5.304 8 C -0.112 4.112 9 N -0.183 5.183 10 N -0.311 5.311 11 C 0.003 3.997 12 C 0.027 3.973 13 C -0.505 4.505 14 H 0.060 0.940 15 C -0.169 4.169 16 N -0.549 5.549 17 Si 0.768 3.232 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.230 4.230 22 C -0.203 4.203 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.176 0.824 28 H 0.282 0.718 29 H 0.248 0.752 30 H 0.177 0.823 31 H 0.058 0.942 32 H 0.005 0.995 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.072 2.601 14.459 15.009 hybrid contribution 0.096 -0.169 -0.516 0.551 sum 3.168 2.432 13.944 14.504 Atomic orbital electron populations 1.21657 0.92981 1.02263 1.01660 1.21842 0.97004 0.95145 0.90077 0.95414 1.22389 0.72400 1.03809 1.00691 1.50776 1.08438 1.46012 1.12225 1.27002 0.86524 0.94226 0.95721 1.70542 1.19529 1.25040 1.15311 1.26453 0.97158 0.96248 0.91336 1.77787 1.00751 1.25388 1.14364 1.60456 1.35506 1.32446 1.02743 1.21058 0.96405 0.91254 0.90952 1.19001 0.92503 0.95395 0.90435 1.20261 1.00888 0.90822 1.38514 0.94021 1.25443 0.96955 0.98816 0.95684 1.70113 1.11341 1.29217 1.44254 0.85894 0.77244 0.81836 0.78191 1.20088 1.21333 1.20397 1.23003 0.92000 1.01990 1.06053 1.22402 1.03266 0.96834 0.97810 0.92655 0.89036 0.94935 0.88881 0.82355 0.71801 0.75162 0.82274 0.94227 0.99504 0.93740 0.90300 0.90597 0.92156 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.41 71.98 0.68 -2.98 16 2 C 0.07 2.14 2.87 44.92 0.13 2.27 16 3 H 0.03 0.88 7.86 -2.39 -0.02 0.86 16 4 C 0.13 2.73 6.11 86.38 0.53 3.25 16 5 N -0.38 -9.48 3.69 -352.06 -1.30 -10.78 16 6 C 0.26 5.05 12.63 180.36 2.28 7.33 16 7 N -0.58 -14.55 11.19 -204.00 -2.28 -16.83 16 8 C 0.19 5.21 13.03 180.76 2.36 7.57 16 9 N -0.35 -11.26 10.01 -61.25 -0.61 -11.88 16 10 N -0.67 -28.04 5.60 -491.56 -2.75 -30.79 16 11 C 0.13 6.25 5.54 86.30 0.48 6.73 16 12 C 0.03 1.40 1.74 -52.93 -0.09 1.30 16 13 C -0.47 -26.20 8.15 25.60 0.21 -26.00 16 14 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 15 C 0.03 1.68 5.39 84.66 0.46 2.14 16 16 N -0.91 -53.07 12.93 21.45 0.28 -52.80 16 17 Si 0.94 45.04 29.54 68.60 2.03 47.06 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 C -0.19 -8.83 9.88 30.59 0.30 -8.52 16 22 C -0.16 -8.16 9.45 30.59 0.29 -7.87 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 25 H 0.03 1.15 7.38 -2.39 -0.02 1.13 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.16 1.57 8.09 -2.39 -0.02 1.56 16 28 H 0.27 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.23 4.93 8.06 -2.91 -0.02 4.90 16 30 H 0.35 14.82 5.53 -89.70 -0.50 14.33 16 31 H 0.04 2.04 7.33 -2.39 -0.02 2.02 16 32 H -0.01 -0.59 7.94 -2.39 -0.02 -0.61 16 33 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 34 H 0.08 3.27 8.08 -2.39 -0.02 3.25 16 35 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 Total: -1.00 -71.33 311.78 3.52 -67.80 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.56 Total: 22.99 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 7.61 Total: -14.78 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.67 Total: -123.08 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -71.33 3.52 -67.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595048526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.324 kcal (2) G-P(sol) polarization free energy of solvation -71.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds