Wall clock time and date at job start Mon Mar 30 2020 18:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46660 * 2 1 4 4 C 1.52991 * 109.47221 * 239.99670 * 2 1 3 5 5 N 1.46509 * 109.47280 * 174.99922 * 4 2 1 6 6 C 1.34420 * 126.82243 * 124.70461 * 5 4 2 7 7 N 1.30834 * 108.07639 * 179.89704 * 6 5 4 8 8 C 1.33238 * 109.82781 * 0.38216 * 7 6 5 9 9 N 1.30714 * 108.94495 * 359.76350 * 8 7 6 10 10 N 1.46903 * 109.46743 * 119.99472 * 2 1 3 11 11 C 1.46897 * 110.99964 * 275.00057 * 10 2 1 12 12 C 1.53002 * 109.47030 * 185.24701 * 11 10 2 13 13 C 1.50699 * 115.54715 * 320.26988 * 12 11 10 14 14 H 1.08000 * 119.99853 * 99.49623 * 13 12 11 15 15 C 1.37878 * 120.00291 * 279.49979 * 13 12 11 16 16 N 1.31512 * 119.99855 * 355.01894 * 15 13 12 17 17 Si 1.86802 * 120.00014 * 175.02469 * 15 13 12 18 18 H 1.48499 * 109.47060 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47290 * 119.99499 * 17 15 13 20 20 H 1.48502 * 109.47075 * 239.99792 * 17 15 13 21 21 C 1.52995 * 117.50068 * 174.60338 * 12 11 10 22 22 C 1.52992 * 60.03200 * 252.49820 * 21 12 11 23 23 H 1.09005 * 109.46619 * 60.00271 * 1 2 3 24 24 H 1.08997 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47183 * 300.00425 * 1 2 3 26 26 H 1.08999 * 109.47219 * 294.99927 * 4 2 1 27 27 H 1.08998 * 109.47376 * 54.99963 * 4 2 1 28 28 H 1.08000 * 125.96457 * 0.04501 * 6 5 4 29 29 H 1.08001 * 125.52702 * 179.72282 * 8 7 6 30 30 H 1.00892 * 111.00051 * 38.95816 * 10 2 1 31 31 H 1.08998 * 109.46984 * 65.24528 * 11 10 2 32 32 H 1.09007 * 109.47215 * 305.24410 * 11 10 2 33 33 H 0.96997 * 119.99672 * 185.00687 * 16 15 13 34 34 H 1.09002 * 117.49884 * 359.97438 * 21 12 11 35 35 H 1.08997 * 117.50174 * 144.99003 * 21 12 11 36 36 H 1.08994 * 117.50238 * 107.50790 * 22 21 12 37 37 H 1.09005 * 117.49798 * 252.52058 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5002 -0.6179 -1.3109 6 6 4.3765 -1.6330 -1.4033 7 7 5.5824 -1.1266 -1.4349 8 6 5.5170 0.2019 -1.3567 9 7 4.2625 0.5611 -1.2789 10 7 2.0196 -0.6924 1.1996 11 6 2.0824 0.2228 2.3469 12 6 2.7173 -0.4964 3.5388 13 6 2.3073 -1.9347 3.7236 14 1 2.9527 -2.7288 3.3783 15 6 1.1082 -2.2369 4.3334 16 7 0.3682 -1.2757 4.8414 17 14 0.5348 -4.0117 4.4384 18 1 1.5405 -4.8955 3.7959 19 1 0.3752 -4.3969 5.8636 20 1 -0.7672 -4.1534 3.7384 21 6 2.9889 0.3282 4.7986 22 6 4.1527 -0.1169 3.9109 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.7517 -1.7715 -1.2054 27 1 1.6054 -0.2619 -2.1369 28 1 4.1283 -2.6832 -1.4466 29 1 6.3631 0.8731 -1.3567 30 1 1.4496 -1.4978 1.4101 31 1 1.0748 0.5439 2.6110 32 1 2.6842 1.0931 2.0850 33 1 -0.4386 -1.4935 5.3337 34 1 2.7156 1.3832 4.7782 35 1 2.8709 -0.1696 5.7611 36 1 4.6449 0.6451 3.3067 37 1 4.8004 -0.9078 4.2892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595048528.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:32 Heat of formation + Delta-G solvation = 112.683995 kcal Electronic energy + Delta-G solvation = -18724.971300 eV Core-core repulsion = 15926.014476 eV Total energy + Delta-G solvation = -2798.956824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.64696 -37.50530 -35.90650 -32.92044 -31.94967 -30.83524 -29.88549 -26.50508 -25.59107 -24.20590 -21.94566 -21.63485 -20.98068 -20.17834 -19.04305 -17.12528 -16.07882 -15.44950 -14.94886 -14.63471 -14.62015 -14.14318 -13.84692 -13.72659 -13.23407 -12.67540 -12.47506 -12.29496 -11.86281 -11.49583 -11.43609 -11.24820 -11.02555 -10.86457 -10.68107 -10.45871 -10.10076 -9.68410 -9.47729 -9.39211 -9.20304 -8.89793 -8.44618 -8.08557 -7.44879 -6.04334 -4.09487 2.02000 2.68572 3.22322 3.32534 3.32576 3.36797 4.36427 4.51909 4.64005 4.87884 5.12499 5.20560 5.23888 5.34918 5.44624 5.51923 5.57446 5.70873 5.97087 6.11794 6.20966 6.33414 6.44232 6.56093 6.59668 6.77915 6.78592 6.84283 6.95637 7.15188 7.16378 7.39857 7.55455 7.86501 7.99637 8.30557 8.42931 8.51932 8.93594 9.54110 11.03078 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.007062 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.150491 B = 3963.720187 C = 4218.346662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.067 3.933 3 H 0.083 0.917 4 C 0.142 3.858 5 N -0.351 5.351 6 C 0.261 3.739 7 N -0.556 5.556 8 C 0.188 3.812 9 N -0.317 5.317 10 N -0.666 5.666 11 C 0.113 3.887 12 C 0.051 3.949 13 C -0.478 4.478 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.884 3.116 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.162 4.162 22 C -0.206 4.206 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.212 0.788 29 H 0.209 0.791 30 H 0.352 0.648 31 H 0.027 0.973 32 H 0.037 0.963 33 H 0.258 0.742 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.879 1.168 -11.607 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.045 4.045 3 H 0.101 0.899 4 C 0.019 3.981 5 N -0.141 5.141 6 C -0.036 4.036 7 N -0.284 5.284 8 C -0.115 4.115 9 N -0.146 5.146 10 N -0.298 5.298 11 C -0.016 4.016 12 C 0.051 3.949 13 C -0.517 4.517 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.519 5.519 17 Si 0.712 3.288 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.200 4.200 22 C -0.243 4.243 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.101 0.899 28 H 0.228 0.772 29 H 0.225 0.775 30 H 0.173 0.827 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.298 1.825 -11.699 11.911 hybrid contribution -1.547 -1.003 0.625 1.947 sum -0.249 0.822 -11.074 11.107 Atomic orbital electron populations 1.22450 0.96665 1.02389 1.02327 1.21829 0.92515 0.98818 0.91350 0.89873 1.21928 0.74161 1.02904 0.99151 1.50200 1.07831 1.04061 1.51958 1.25829 0.84835 0.96515 0.96416 1.70464 1.23048 1.09100 1.25811 1.25779 0.94651 0.91695 0.99337 1.77904 1.04469 1.06741 1.25463 1.60462 1.56477 1.09867 1.02998 1.21326 0.97921 0.92617 0.89743 1.18783 0.90942 0.94678 0.90535 1.20432 1.02894 0.89877 1.38453 0.92177 1.25004 0.96507 0.96596 0.95466 1.70017 1.15423 1.31185 1.35269 0.86656 0.78599 0.85691 0.77841 1.19604 1.21176 1.21139 1.22531 1.02524 0.97653 0.97318 1.22945 0.93132 1.02417 1.05803 0.92719 0.92240 0.91606 0.88344 0.89852 0.77203 0.77506 0.82697 0.95440 0.94504 0.93238 0.92383 0.90149 0.92079 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.16 37.16 0.34 -2.04 16 2 C 0.07 1.00 2.72 -67.71 -0.18 0.82 16 3 H 0.08 1.39 7.67 -51.93 -0.40 0.99 16 4 C 0.14 1.73 6.18 -4.04 -0.02 1.71 16 5 N -0.35 -5.15 3.62 -62.63 -0.23 -5.37 16 6 C 0.26 3.69 12.63 -90.66 -1.14 2.54 16 7 N -0.56 -8.87 11.19 -15.83 -0.18 -9.05 16 8 C 0.19 2.87 13.03 -91.81 -1.20 1.67 16 9 N -0.32 -5.19 12.53 29.29 0.37 -4.82 16 10 N -0.67 -12.61 5.94 -106.72 -0.63 -13.24 16 11 C 0.11 2.48 5.63 -3.82 -0.02 2.46 16 12 C 0.05 1.25 1.77 -155.63 -0.28 0.97 16 13 C -0.48 -12.46 7.45 -34.44 -0.26 -12.72 16 14 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 15 C 0.07 1.74 5.44 -17.82 -0.10 1.64 16 16 N -0.88 -24.05 12.86 55.43 0.71 -23.33 16 17 Si 0.88 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.16 -3.91 9.43 -26.74 -0.25 -4.16 16 22 C -0.21 -4.75 9.89 -26.70 -0.26 -5.01 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 25 H 0.06 1.01 7.55 -51.93 -0.39 0.62 16 26 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.21 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.21 2.41 8.06 -52.49 -0.42 1.98 16 30 H 0.35 7.08 7.45 -39.30 -0.29 6.79 16 31 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 32 H 0.04 0.81 7.73 -51.92 -0.40 0.40 16 33 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 37 H 0.07 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 315.56 15.07 4.76 4.76 Total: -1.00 -30.14 315.56 -9.25 -39.38 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.64 Total: 8.61 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.38 Total: -12.12 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.04 Total: -55.82 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.14 -9.25 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595048528.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.069 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds