Wall clock time and date at job start Mon Mar 30 2020 18:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99681 * 2 1 4 4 H 1.48495 * 109.47102 * 270.00354 * 3 2 1 5 5 H 1.48504 * 109.46810 * 30.00390 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00083 * 3 2 1 7 7 C 1.38803 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99833 * 159.26834 * 7 2 1 9 9 N 1.36934 * 120.00469 * 339.26705 * 7 2 1 10 10 C 1.46500 * 119.99838 * 321.60039 * 9 7 2 11 11 C 1.52994 * 109.47511 * 269.99842 * 10 9 7 12 12 C 1.50693 * 109.47607 * 179.97438 * 11 10 9 13 13 C 1.35358 * 126.91057 * 274.95930 * 12 11 10 14 14 N 1.33767 * 106.49381 * 180.02562 * 13 12 11 15 15 N 1.28635 * 108.88904 * 359.97438 * 14 13 12 16 16 N 1.28711 * 110.17579 * 0.02562 * 15 14 13 17 17 H 0.96999 * 125.86386 * 180.02562 * 16 15 14 18 18 C 1.46499 * 120.00615 * 141.59866 * 9 7 2 19 19 C 1.54268 * 110.03200 * 62.54885 * 18 9 7 20 20 C 1.54961 * 104.15957 * 217.14227 * 19 18 9 21 21 C 1.54884 * 102.78046 * 37.88916 * 20 19 18 22 22 C 1.53877 * 110.02893 * 305.33751 * 18 9 7 23 23 H 0.97000 * 120.00615 * 355.03592 * 1 2 3 24 24 H 1.09006 * 109.47275 * 149.99571 * 10 9 7 25 25 H 1.08998 * 109.46901 * 29.99852 * 10 9 7 26 26 H 1.09006 * 109.47072 * 59.99605 * 11 10 9 27 27 H 1.09000 * 109.46970 * 300.00455 * 11 10 9 28 28 H 1.08000 * 126.75430 * 0.02562 * 13 12 11 29 29 H 1.08992 * 110.02152 * 183.94690 * 18 9 7 30 30 H 1.09002 * 110.48583 * 335.78690 * 19 18 9 31 31 H 1.09003 * 110.48354 * 98.42902 * 19 18 9 32 32 H 1.08999 * 110.72079 * 279.57048 * 20 19 18 33 33 H 1.09011 * 110.92028 * 156.29879 * 20 19 18 34 34 H 1.09002 * 110.48802 * 203.40447 * 21 20 19 35 35 H 1.08995 * 110.60053 * 80.82081 * 21 20 19 36 36 H 1.09001 * 110.03011 * 238.56413 * 22 18 9 37 37 H 1.08998 * 110.03480 * 359.94438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0378 -1.2321 -0.3317 9 7 1.3922 -2.3498 0.4187 10 6 0.4699 -2.3115 1.5564 11 6 1.2462 -2.5609 2.8510 12 6 0.2977 -2.5208 4.0212 13 6 -0.1147 -1.4224 4.6962 14 7 -0.9462 -1.8534 5.6513 15 7 -1.0427 -3.1337 5.5726 16 7 -0.3130 -3.5756 4.6089 17 1 -0.2177 -4.5050 4.3482 18 6 1.6531 -3.6161 -0.2702 19 6 3.1427 -3.9939 -0.1353 20 6 3.4983 -4.6282 -1.5037 21 6 2.7000 -3.7554 -2.5037 22 6 1.3715 -3.4648 -1.7754 23 1 -0.4851 0.8368 0.0727 24 1 -0.2902 -3.0832 1.4341 25 1 -0.0093 -1.3336 1.6028 26 1 2.0063 -1.7892 2.9732 27 1 1.7255 -3.5387 2.8045 28 1 0.1713 -0.3992 4.5018 29 1 1.0284 -4.4046 0.1491 30 1 3.7474 -3.1044 0.0413 31 1 3.2816 -4.7166 0.6687 32 1 3.1665 -5.6656 -1.5459 33 1 4.5686 -4.5583 -1.6988 34 1 2.5166 -4.3044 -3.4273 35 1 3.2318 -2.8271 -2.7121 36 1 0.6108 -4.1807 -2.0867 37 1 1.0398 -2.4496 -1.9931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595326902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:36 Heat of formation + Delta-G solvation = 95.718086 kcal Electronic energy + Delta-G solvation = -18728.308317 eV Core-core repulsion = 15928.615796 eV Total energy + Delta-G solvation = -2799.692521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.89317 -37.86697 -34.98959 -33.14403 -32.37300 -30.93020 -28.30861 -27.89094 -26.46332 -24.32454 -22.57930 -21.94238 -20.77877 -20.01316 -19.11306 -17.75765 -16.44793 -15.66046 -15.38451 -14.86761 -14.39246 -14.03254 -13.88240 -13.29705 -13.11083 -12.63561 -12.46421 -12.04025 -11.44415 -11.21428 -10.99266 -10.86693 -10.70905 -10.61327 -10.48078 -10.34743 -10.30567 -10.22699 -10.17699 -9.76317 -9.73380 -9.58574 -8.71615 -8.51581 -6.66242 -5.83156 -3.47818 1.94485 2.93176 3.09130 3.31850 3.41417 3.42781 4.41751 4.87691 5.11734 5.23532 5.34796 5.38872 5.45342 5.49162 5.69722 5.81490 6.07831 6.13136 6.16550 6.19893 6.23856 6.35671 6.40990 6.46579 6.53499 6.54591 6.59720 6.77670 6.88779 6.97567 7.08978 7.19232 7.33126 7.55114 7.77819 8.45210 8.79165 9.11303 9.73063 10.31044 11.13085 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.008177 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.630737 B = 3423.246878 C = 4683.922992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.016 3.984 3 Si 0.889 3.111 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.575 5.575 10 C 0.154 3.846 11 C -0.072 4.072 12 C 0.022 3.978 13 C -0.057 4.057 14 N -0.271 5.271 15 N -0.105 5.105 16 N -0.398 5.398 17 H 0.443 0.557 18 C 0.169 3.831 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.131 4.131 23 H 0.255 0.745 24 H 0.022 0.978 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.188 0.812 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 -7.755 1.428 8.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.185 4.185 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.293 5.293 10 C 0.026 3.974 11 C -0.114 4.114 12 C -0.113 4.113 13 C -0.214 4.214 14 N -0.138 5.138 15 N -0.085 5.085 16 N -0.119 5.119 17 H 0.287 0.713 18 C 0.062 3.938 19 C -0.175 4.175 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.170 4.170 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.118 0.882 26 H 0.111 0.889 27 H 0.078 0.922 28 H 0.205 0.795 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.629 -7.831 2.547 8.644 hybrid contribution 1.217 0.550 -1.046 1.696 sum 3.846 -7.281 1.502 8.370 Atomic orbital electron populations 1.70048 1.05493 1.26261 1.50565 1.25163 0.94876 0.98657 0.99788 0.86541 0.79665 0.84106 0.77886 1.21318 1.21428 1.20291 1.18883 0.93713 0.85292 1.40524 0.92031 1.43914 1.51885 1.03547 1.29955 1.20908 0.90529 1.02943 0.83031 1.21154 0.96317 1.02631 0.91330 1.22766 1.01472 0.87189 0.99858 1.23368 1.01172 1.00516 0.96310 1.74979 1.16607 1.01653 1.20603 1.78150 1.15362 1.06730 1.08277 1.45056 1.32215 1.11118 1.23486 0.71279 1.21081 0.92831 0.88427 0.91481 1.22865 0.99770 0.99767 0.95077 1.22439 0.98761 0.98323 0.96586 1.22251 0.97360 0.99009 0.96927 1.22530 0.95383 1.02624 0.96472 0.93494 0.95998 0.88232 0.88914 0.92249 0.79527 0.93686 0.90702 0.93652 0.92757 0.92907 0.93444 0.91941 0.94178 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.49 11.48 55.49 0.64 -22.85 16 2 C 0.02 0.40 4.96 -17.43 -0.09 0.32 16 3 Si 0.89 20.13 29.61 -169.99 -5.03 15.10 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.25 -6.14 7.75 -15.06 -0.12 -6.26 16 8 H 0.06 1.51 6.94 -52.48 -0.36 1.15 16 9 N -0.57 -12.41 2.38 -164.40 -0.39 -12.80 16 10 C 0.15 3.14 5.26 -4.04 -0.02 3.12 16 11 C -0.07 -1.20 6.11 -27.89 -0.17 -1.37 16 12 C 0.02 0.35 6.56 -82.09 -0.54 -0.19 16 13 C -0.06 -0.98 11.99 -17.74 -0.21 -1.19 16 14 N -0.27 -5.00 12.41 30.24 0.38 -4.62 16 15 N -0.11 -1.80 13.38 60.35 0.81 -0.99 16 16 N -0.40 -5.75 6.98 33.54 0.23 -5.52 16 17 H 0.44 4.66 8.96 -190.41 -1.71 2.95 16 18 C 0.17 3.18 3.42 -66.81 -0.23 2.95 16 19 C -0.14 -2.26 6.43 -25.03 -0.16 -2.42 16 20 C -0.12 -1.82 6.91 -24.70 -0.17 -1.99 16 21 C -0.12 -1.91 6.83 -25.08 -0.17 -2.08 16 22 C -0.13 -2.47 6.24 -25.61 -0.16 -2.63 16 23 H 0.25 6.68 8.32 -40.82 -0.34 6.34 16 24 H 0.02 0.44 7.90 -51.93 -0.41 0.03 16 25 H 0.10 2.38 5.55 -51.93 -0.29 2.09 16 26 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.19 2.95 8.06 -52.49 -0.42 2.52 16 29 H 0.04 0.81 7.81 -51.93 -0.41 0.40 16 30 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.97 7.17 -51.93 -0.37 1.60 16 LS Contribution 302.51 15.07 4.56 4.56 Total: -1.00 -27.56 302.51 -7.68 -35.24 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.83 Total: 3.62 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -2.04 Total: -11.74 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 1.66 Total: -46.78 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.56 -7.68 -35.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595326902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.954 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds