Wall clock time and date at job start Mon Mar 30 2020 18:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47499 * 239.99123 * 2 1 3 5 5 H 1.07991 * 120.00443 * 240.00770 * 4 2 1 6 6 C 1.37885 * 119.99748 * 60.00263 * 4 2 1 7 7 N 1.31512 * 119.99800 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00101 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47319 * 119.99927 * 8 6 4 11 11 H 1.48501 * 109.47021 * 240.00321 * 8 6 4 12 12 N 1.46904 * 109.46520 * 119.99303 * 2 1 3 13 13 C 1.46907 * 110.99604 * 176.04571 * 12 2 1 14 14 C 1.46899 * 111.00294 * 299.99712 * 12 2 1 15 15 C 1.50706 * 109.46939 * 170.00052 * 14 12 2 16 16 C 1.35448 * 126.77201 * 90.00445 * 15 14 12 17 17 C 1.41384 * 103.98528 * 179.74051 * 16 15 14 18 18 C 1.50698 * 126.80687 * 180.20620 * 17 16 15 19 19 C 1.53005 * 117.49568 * 343.61960 * 18 17 16 20 20 C 1.53002 * 60.00102 * 252.51363 * 19 18 17 21 21 N 1.30176 * 106.39294 * 0.22557 * 17 16 15 22 22 O 1.20926 * 111.60451 * 359.97438 * 21 17 16 23 23 H 1.09001 * 109.47642 * 300.00829 * 1 2 3 24 24 H 1.09003 * 109.47199 * 60.00330 * 1 2 3 25 25 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 26 26 H 0.96997 * 119.99887 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47040 * 183.95206 * 13 12 2 28 28 H 1.08993 * 109.47113 * 303.95724 * 13 12 2 29 29 H 1.08997 * 109.47100 * 63.95879 * 13 12 2 30 30 H 1.09002 * 109.46994 * 50.00598 * 14 12 2 31 31 H 1.08992 * 109.47339 * 290.00373 * 14 12 2 32 32 H 1.08002 * 128.01287 * 0.02562 * 16 15 14 33 33 H 1.08992 * 115.55272 * 129.32925 * 18 17 16 34 34 H 1.08998 * 117.49888 * 0.02562 * 19 18 17 35 35 H 1.08996 * 117.49332 * 145.02375 * 19 18 17 36 36 H 1.08996 * 117.50011 * 252.51302 * 20 19 18 37 37 H 1.09003 * 117.51607 * 107.48305 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6531 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3214 -1.1207 -4.0077 9 1 3.1465 -2.2874 -3.6034 10 1 1.1663 -1.5871 -4.8158 11 1 3.1468 -0.1878 -4.8163 12 7 2.0195 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1872 14 6 1.5485 -0.0261 2.4211 15 6 1.8577 -0.8908 3.6161 16 6 2.9869 -0.8671 4.3636 17 6 2.7659 -1.8576 5.3481 18 6 3.7066 -2.2548 6.4564 19 6 5.1686 -1.8213 6.3313 20 6 4.7860 -3.2889 6.1301 21 7 1.5888 -2.3587 5.1072 22 8 1.0702 -1.8361 4.1479 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7091 1.1610 -3.4845 27 1 3.8162 -1.3720 2.0503 28 1 3.8068 -1.2915 0.2722 29 1 3.9191 0.2044 1.2302 30 1 0.4720 0.1327 2.3564 31 1 2.0517 0.9348 2.5280 32 1 3.8535 -0.2346 4.2397 33 1 3.2721 -2.2789 7.4557 34 1 5.4498 -1.2484 5.4477 35 1 5.6961 -1.5600 7.2486 36 1 5.0618 -3.9932 6.9149 37 1 4.8154 -3.6822 5.1139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595343175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:41 Heat of formation + Delta-G solvation = 95.149961 kcal Electronic energy + Delta-G solvation = -18280.727766 eV Core-core repulsion = 15448.717858 eV Total energy + Delta-G solvation = -2832.009908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.64028 -37.63053 -37.29109 -33.44920 -32.84917 -31.53863 -29.12763 -27.32145 -24.78418 -24.56801 -23.42147 -22.72353 -21.94639 -19.97270 -19.24229 -17.32877 -16.92427 -16.29505 -15.81427 -15.20079 -14.59288 -14.29941 -14.10206 -13.94612 -13.32407 -12.71000 -12.36137 -12.10389 -11.94728 -11.72004 -11.41494 -11.28435 -11.10415 -11.01631 -10.73996 -10.71762 -10.45689 -10.21088 -10.11741 -9.95524 -9.61924 -9.15083 -8.91866 -8.46952 -7.35820 -6.06706 -4.11302 1.73326 2.35904 3.27335 3.35558 3.38087 3.40684 3.56725 4.10729 4.37372 4.59538 4.67192 4.87184 5.01068 5.07837 5.25477 5.35270 5.40677 5.49307 5.55246 5.72605 5.87244 5.90135 5.92422 6.05375 6.09399 6.22269 6.28919 6.69063 6.77145 6.98634 7.04876 7.40927 7.59704 7.76921 8.08122 8.22480 8.46765 8.53106 8.94397 9.53929 11.00203 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035449 B = 0.004794 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.673106 B = 5839.078893 C = 6254.456012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.532 5.532 13 C 0.032 3.968 14 C 0.119 3.881 15 C 0.012 3.988 16 C -0.239 4.239 17 C 0.043 3.957 18 C -0.082 4.082 19 C -0.164 4.164 20 C -0.164 4.164 21 N -0.369 5.369 22 O 0.105 5.895 23 H 0.010 0.990 24 H 0.088 0.912 25 H 0.037 0.963 26 H 0.261 0.739 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.014 0.986 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.165 0.835 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -1.905 14.433 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.108 3.892 3 H 0.020 0.980 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.257 5.257 13 C -0.116 4.116 14 C -0.010 4.010 15 C -0.052 4.052 16 C -0.262 4.262 17 C -0.116 4.116 18 C -0.101 4.101 19 C -0.201 4.201 20 C -0.202 4.202 21 N -0.073 5.073 22 O 0.039 5.961 23 H 0.029 0.971 24 H 0.106 0.894 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.032 0.968 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.933 -3.216 14.840 15.966 hybrid contribution 1.231 0.951 -1.058 1.882 sum 6.165 -2.265 13.782 15.267 Atomic orbital electron populations 1.21903 0.97464 1.00045 1.00088 1.19309 0.92531 0.92106 0.85260 0.97975 1.21154 1.31215 1.12386 0.89556 0.91702 1.24920 0.95127 0.95051 0.99040 1.69891 1.36814 1.22978 1.23449 0.86447 0.78632 0.79601 0.82787 1.19734 1.20955 1.21122 1.62156 1.09879 1.52539 1.01160 1.22320 0.88278 0.99025 1.02022 1.20668 1.03220 0.91526 0.85597 1.24688 0.90710 0.92393 0.97443 1.22261 1.01026 1.04577 0.98348 1.22526 0.93578 0.96863 0.98594 1.20041 0.88341 1.05766 0.95980 1.23012 0.95383 0.97862 1.03881 1.23010 1.01394 0.92372 1.03457 1.73790 1.10939 1.18964 1.03652 1.84838 1.40168 1.39007 1.32048 0.97127 0.89383 0.94340 0.92944 0.93696 0.90027 0.96759 0.88187 0.92227 0.81763 0.86289 0.88170 0.88023 0.88117 0.88403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.76 37.16 0.33 -2.89 16 2 C 0.21 5.17 2.06 -68.87 -0.14 5.02 16 3 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 4 C -0.50 -13.42 7.88 -34.44 -0.27 -13.69 16 5 H 0.06 1.73 6.40 -52.49 -0.34 1.40 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.09 4.61 -237.73 -1.10 -12.19 16 13 C 0.03 0.61 9.01 60.07 0.54 1.15 16 14 C 0.12 2.07 5.34 -4.97 -0.03 2.04 16 15 C 0.01 0.20 6.36 -35.30 -0.22 -0.03 16 16 C -0.24 -3.49 9.07 -39.38 -0.36 -3.85 16 17 C 0.04 0.63 6.95 -82.10 -0.57 0.06 16 18 C -0.08 -0.93 6.33 -91.77 -0.58 -1.52 16 19 C -0.16 -1.47 10.04 -26.73 -0.27 -1.74 16 20 C -0.16 -1.61 10.23 -26.73 -0.27 -1.89 16 21 N -0.37 -6.35 12.07 33.42 0.40 -5.95 16 22 O 0.10 1.87 11.20 17.19 0.19 2.06 16 23 H 0.01 0.21 6.20 -51.93 -0.32 -0.12 16 24 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.04 0.77 6.34 -51.93 -0.33 0.44 16 28 H 0.08 1.68 6.10 -51.93 -0.32 1.36 16 29 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 1.73 5.83 -51.93 -0.30 1.42 16 31 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 32 H 0.16 2.03 7.63 -52.49 -0.40 1.63 16 33 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.10 0.91 7.35 -51.93 -0.38 0.53 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 302.75 15.07 4.56 4.56 Total: -1.00 -28.55 302.75 -7.49 -36.04 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.22 Total: -0.53 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -1.94 Total: -15.79 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -0.07 Total: -42.24 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.19 Total: 2.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.55 -7.49 -36.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595343175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.194 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds