Wall clock time and date at job start Mon Mar 30 2020 18:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47499 * 239.99123 * 2 1 3 5 5 H 1.07991 * 120.00443 * 240.00770 * 4 2 1 6 6 C 1.37885 * 119.99748 * 60.00263 * 4 2 1 7 7 N 1.31512 * 119.99800 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00101 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46929 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47319 * 119.99927 * 8 6 4 11 11 H 1.48501 * 109.47021 * 240.00321 * 8 6 4 12 12 N 1.46904 * 109.46520 * 119.99303 * 2 1 3 13 13 C 1.46907 * 110.99604 * 176.04571 * 12 2 1 14 14 C 1.46899 * 111.00294 * 299.99712 * 12 2 1 15 15 C 1.50706 * 109.46939 * 170.00052 * 14 12 2 16 16 C 1.35448 * 126.77201 * 90.00445 * 15 14 12 17 17 C 1.41384 * 103.98528 * 179.74051 * 16 15 14 18 18 C 1.50698 * 126.80687 * 180.20620 * 17 16 15 19 19 C 1.53005 * 117.49568 * 343.61960 * 18 17 16 20 20 C 1.53002 * 60.00102 * 252.51363 * 19 18 17 21 21 N 1.30176 * 106.39294 * 0.22557 * 17 16 15 22 22 O 1.20926 * 111.60451 * 359.97438 * 21 17 16 23 23 H 1.09001 * 109.47642 * 300.00829 * 1 2 3 24 24 H 1.09003 * 109.47199 * 60.00330 * 1 2 3 25 25 H 1.08996 * 109.47323 * 180.02562 * 1 2 3 26 26 H 0.96997 * 119.99887 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47040 * 183.95206 * 13 12 2 28 28 H 1.08993 * 109.47113 * 303.95724 * 13 12 2 29 29 H 1.08997 * 109.47100 * 63.95879 * 13 12 2 30 30 H 1.09002 * 109.46994 * 50.00598 * 14 12 2 31 31 H 1.08992 * 109.47339 * 290.00373 * 14 12 2 32 32 H 1.08002 * 128.01287 * 0.02562 * 16 15 14 33 33 H 1.08992 * 115.55272 * 129.32925 * 18 17 16 34 34 H 1.08998 * 117.49888 * 0.02562 * 19 18 17 35 35 H 1.08996 * 117.49332 * 145.02375 * 19 18 17 36 36 H 1.08996 * 117.50011 * 252.51302 * 20 19 18 37 37 H 1.09003 * 117.51607 * 107.48305 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6531 -1.5886 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3214 -1.1207 -4.0077 9 1 3.1465 -2.2874 -3.6034 10 1 1.1663 -1.5871 -4.8158 11 1 3.1468 -0.1878 -4.8163 12 7 2.0195 -0.6924 1.1996 13 6 3.4850 -0.7945 1.1872 14 6 1.5485 -0.0261 2.4211 15 6 1.8577 -0.8908 3.6161 16 6 2.9869 -0.8671 4.3636 17 6 2.7659 -1.8576 5.3481 18 6 3.7066 -2.2548 6.4564 19 6 5.1686 -1.8213 6.3313 20 6 4.7860 -3.2889 6.1301 21 7 1.5888 -2.3587 5.1072 22 8 1.0702 -1.8361 4.1479 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7091 1.1610 -3.4845 27 1 3.8162 -1.3720 2.0503 28 1 3.8068 -1.2915 0.2722 29 1 3.9191 0.2044 1.2302 30 1 0.4720 0.1327 2.3564 31 1 2.0517 0.9348 2.5280 32 1 3.8535 -0.2346 4.2397 33 1 3.2721 -2.2789 7.4557 34 1 5.4498 -1.2484 5.4477 35 1 5.6961 -1.5600 7.2486 36 1 5.0618 -3.9932 6.9149 37 1 4.8154 -3.6822 5.1139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595343175.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:40 Heat of formation + Delta-G solvation = 78.555402 kcal Electronic energy + Delta-G solvation = -18281.447360 eV Core-core repulsion = 15448.717858 eV Total energy + Delta-G solvation = -2832.729502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -45.86614 -38.95190 -38.46154 -35.17504 -34.12974 -33.03128 -30.93535 -28.86443 -26.69271 -25.64560 -24.96423 -23.68036 -22.90470 -21.63340 -20.47763 -18.62414 -18.46039 -17.96012 -17.01095 -16.70859 -15.98467 -15.65167 -15.58064 -15.27615 -14.69494 -14.46744 -13.78612 -13.74552 -13.01465 -12.96614 -12.90267 -12.61492 -12.56077 -12.45306 -12.36229 -12.11966 -12.04728 -11.92518 -11.76376 -11.32745 -10.91631 -10.66136 -10.55057 -10.32815 -9.02609 -8.10983 -6.21883 0.46599 1.22840 1.42203 1.45270 1.55854 2.13460 2.43897 2.74854 3.14773 3.17948 3.36774 3.63834 3.87281 4.05182 4.09787 4.14866 4.30177 4.39772 4.54485 4.61652 4.69325 4.73175 4.77635 4.93035 4.97157 5.03783 5.07057 5.11914 5.13605 5.23736 5.25649 5.49831 5.71857 5.77433 6.25606 6.32335 6.63478 6.90855 7.29782 7.46930 8.95067 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035449 B = 0.004794 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.673106 B = 5839.078893 C = 6254.456012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.219 3.781 3 H -0.022 1.022 4 C -0.519 4.519 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.545 5.545 13 C 0.038 3.962 14 C 0.124 3.876 15 C -0.003 4.003 16 C -0.227 4.227 17 C 0.049 3.951 18 C -0.106 4.106 19 C -0.144 4.144 20 C -0.164 4.164 21 N -0.395 5.395 22 O 0.079 5.921 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.028 0.972 26 H 0.262 0.738 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.190 0.810 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -2.106 15.710 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.112 3.888 3 H -0.004 1.004 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.271 5.271 13 C -0.110 4.110 14 C -0.005 4.005 15 C -0.067 4.067 16 C -0.249 4.249 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.181 4.181 20 C -0.202 4.202 21 N -0.103 5.103 22 O 0.017 5.983 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.207 0.793 33 H 0.148 0.852 34 H 0.118 0.882 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.574 -3.411 16.113 17.733 hybrid contribution 0.756 1.001 -1.358 1.849 sum 7.330 -2.410 14.754 16.650 Atomic orbital electron populations 1.21736 0.97199 0.99378 1.00213 1.19075 0.92712 0.90722 0.86251 1.00437 1.21425 1.31184 1.12294 0.90878 0.92395 1.25635 0.95347 0.95726 1.01683 1.70002 1.37630 1.24043 1.24040 0.85517 0.78085 0.78614 0.79469 1.19428 1.20801 1.20568 1.62018 1.11001 1.52763 1.01317 1.22252 0.87291 0.99577 1.01876 1.20604 1.03167 0.92208 0.84505 1.24580 0.91574 0.92811 0.97740 1.22589 1.00838 1.04136 0.97314 1.23126 0.93101 0.95826 0.98900 1.20256 0.88950 1.08010 0.95298 1.23153 0.93064 0.96820 1.05076 1.23085 1.00385 0.93391 1.03324 1.73793 1.12409 1.19978 1.04110 1.84806 1.41015 1.39763 1.32725 0.94425 0.91826 0.95238 0.92881 0.91635 0.92059 0.95913 0.88466 0.90497 0.79283 0.85230 0.88159 0.85398 0.86027 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.04 8.76 71.98 0.63 -5.41 16 2 C 0.22 10.69 2.06 44.17 0.09 10.78 16 3 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 4 C -0.52 -27.89 7.88 25.60 0.20 -27.69 16 5 H 0.06 3.13 6.40 -2.92 -0.02 3.11 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.40 11.32 21.45 0.24 -51.16 16 8 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.55 -22.56 4.61 -906.04 -4.18 -26.74 16 13 C 0.04 1.42 9.01 127.69 1.15 2.57 16 14 C 0.12 4.19 5.34 85.56 0.46 4.65 16 15 C 0.00 -0.10 6.36 25.04 0.16 0.06 16 16 C -0.23 -6.12 9.07 22.40 0.20 -5.91 16 17 C 0.05 1.37 6.95 43.58 0.30 1.67 16 18 C -0.11 -2.14 6.33 -11.54 -0.07 -2.21 16 19 C -0.14 -2.05 10.04 30.60 0.31 -1.74 16 20 C -0.16 -2.77 10.23 30.60 0.31 -2.46 16 21 N -0.39 -13.36 12.07 -49.54 -0.60 -13.96 16 22 O 0.08 2.79 11.20 71.69 0.80 3.59 16 23 H 0.04 1.53 6.20 -2.39 -0.01 1.51 16 24 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 27 H 0.07 2.13 6.34 -2.38 -0.02 2.11 16 28 H 0.06 2.51 6.10 -2.39 -0.01 2.50 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 3.30 5.83 -2.39 -0.01 3.29 16 31 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 32 H 0.19 4.02 7.63 -2.91 -0.02 4.00 16 33 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.10 1.45 7.35 -2.39 -0.02 1.43 16 35 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -61.39 302.75 3.55 -57.84 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.06 Total: 9.80 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 4.19 Total: -24.42 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -4.54 Total: -91.86 kcal Atomic # 8 Polarization: 2.79 SS G_CDS: 0.80 Total: 3.59 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -61.39 3.55 -57.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595343175.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.395 kcal (2) G-P(sol) polarization free energy of solvation -61.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds