Wall clock time and date at job start Mon Mar 30 2020 18:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50697 * 109.46615 * 46.20263 * 14 13 12 16 16 C 1.39871 * 125.89878 * 95.00596 * 15 14 13 17 17 C 1.35313 * 107.92380 * 179.97438 * 16 15 14 18 18 N 1.34949 * 107.74415 * 359.97438 * 17 16 15 19 19 H 0.97000 * 126.04083 * 180.02562 * 18 17 16 20 20 N 1.30836 * 125.90080 * 274.68904 * 15 14 13 21 21 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 22 22 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 23 23 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 25 25 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 26 26 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 27 27 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 28 28 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 29 29 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 30 30 H 1.08997 * 109.47258 * 166.20113 * 14 13 12 31 31 H 1.09001 * 109.46957 * 286.20350 * 14 13 12 32 32 H 1.08000 * 126.03869 * 359.97002 * 16 15 14 33 33 H 1.08001 * 126.13052 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.48908 * 180.71202 * 21 13 12 35 35 H 1.09002 * 109.49369 * 60.64073 * 21 13 12 36 36 H 1.08997 * 109.49355 * 296.78047 * 22 10 9 37 37 H 1.09003 * 109.49032 * 56.82589 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5858 -8.4251 -0.4600 16 6 3.0019 -9.4067 -1.2675 17 6 2.4916 -10.3629 -0.4574 18 7 2.7441 -9.9996 0.8175 19 1 2.4937 -10.4957 1.6126 20 7 3.4362 -8.7820 0.7898 21 6 4.0043 -4.7809 -1.1842 22 6 2.9687 -3.6562 -1.2558 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 0.9734 -4.8433 1.1788 27 1 0.8254 -5.0915 -0.5780 28 1 3.2356 -5.8353 1.1420 29 1 2.0486 -6.9718 0.4571 30 1 4.6460 -7.3360 -1.9580 31 1 5.1087 -6.9403 -0.2854 32 1 2.9648 -9.4021 -2.3468 33 1 1.9747 -11.2567 -0.7743 34 1 4.5519 -4.8316 -2.1253 35 1 4.6998 -4.5834 -0.3685 36 1 2.2897 -3.8396 -2.0885 37 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595391163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:48 Heat of formation + Delta-G solvation = 92.979651 kcal Electronic energy + Delta-G solvation = -18253.124637 eV Core-core repulsion = 15453.313368 eV Total energy + Delta-G solvation = -2799.811269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29690 -38.55982 -35.23333 -32.64922 -31.67165 -30.33673 -29.98659 -28.43471 -26.14719 -23.88120 -22.90387 -21.52729 -21.35262 -19.63026 -19.02541 -18.17599 -16.25141 -15.96632 -14.85815 -14.65767 -14.59895 -14.26951 -14.10195 -13.66958 -13.58568 -13.21222 -13.12560 -12.40249 -12.10454 -11.83659 -11.52345 -11.12065 -10.80233 -10.72421 -10.65743 -10.59017 -10.32654 -10.23033 -9.65585 -9.53072 -9.10926 -8.82468 -8.39407 -8.02337 -7.14061 -5.97883 -3.99136 1.77271 2.64791 2.77259 3.34971 3.40929 3.45571 4.30858 4.46662 4.58150 4.70854 5.05024 5.12546 5.37704 5.41376 5.55521 5.63150 5.70236 5.72233 5.89161 5.95002 5.97995 6.00704 6.15805 6.34005 6.51890 6.55203 6.68838 6.75811 7.14627 7.26825 7.29210 7.42386 7.45664 7.58638 7.85812 8.15844 8.28769 8.62127 9.08650 9.64907 11.13082 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.052337 B = 0.004238 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.868970 B = 6604.604337 C = 6858.144376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.058 3.942 12 C 0.064 3.936 13 N -0.532 5.532 14 C 0.132 3.868 15 C 0.086 3.914 16 C -0.255 4.255 17 C 0.051 3.949 18 N -0.480 5.480 19 H 0.437 0.563 20 N -0.288 5.288 21 C 0.058 3.942 22 C 0.068 3.932 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.148 0.852 33 H 0.175 0.825 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.029 0.971 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 -19.887 -2.314 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.064 4.064 13 N -0.258 5.258 14 C 0.003 3.997 15 C -0.081 4.081 16 C -0.285 4.285 17 C -0.096 4.096 18 N -0.188 5.188 19 H 0.281 0.719 20 N -0.113 5.113 21 C -0.070 4.070 22 C -0.061 4.061 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.166 0.834 33 H 0.192 0.808 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.148 -19.448 -1.118 20.427 hybrid contribution -0.098 0.304 -0.436 0.540 sum 6.050 -19.143 -1.554 20.137 Atomic orbital electron populations 1.69961 1.06076 1.26703 1.51165 1.24990 0.94846 0.99281 0.95514 0.86509 0.79816 0.83157 0.78005 1.20737 1.21308 1.19787 1.21168 0.93466 0.89970 1.49848 0.91899 1.19700 0.90087 0.87345 0.96069 1.62276 1.28142 1.02746 1.33218 1.22069 0.94872 0.90020 1.00188 1.22189 0.96080 0.98422 0.89715 1.62333 1.25191 1.02808 1.35517 1.20490 0.92739 0.85816 1.00700 1.22190 0.98600 0.96842 0.90451 1.21436 1.09595 0.96505 1.00924 1.22565 1.01437 1.00770 0.84877 1.46355 1.46230 1.18856 1.07350 0.71924 1.77389 1.16317 0.97123 1.20454 1.22273 0.96198 0.88261 1.00236 1.21982 0.95455 0.97317 0.91314 0.92975 0.99078 0.95315 0.91306 0.95354 0.94241 0.91095 0.88928 0.93430 0.83436 0.80829 0.90934 0.94150 0.95284 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.50 8.47 -34.44 -0.29 -14.79 16 8 H 0.06 1.78 7.13 -52.49 -0.37 1.40 16 9 C 0.19 5.23 4.72 -4.98 -0.02 5.20 16 10 N -0.54 -12.31 4.70 -235.90 -1.11 -13.42 16 11 C 0.06 1.16 5.61 -3.76 -0.02 1.13 16 12 C 0.06 1.12 4.96 -3.77 -0.02 1.10 16 13 N -0.53 -8.49 4.85 -235.90 -1.14 -9.64 16 14 C 0.13 1.73 5.85 -4.97 -0.03 1.70 16 15 C 0.09 1.13 5.19 -82.41 -0.43 0.70 16 16 C -0.25 -2.77 10.74 -40.01 -0.43 -3.20 16 17 C 0.05 0.44 11.99 -17.22 -0.21 0.23 16 18 N -0.48 -4.66 7.36 30.45 0.22 -4.44 16 19 H 0.44 2.79 8.96 -182.61 -1.64 1.15 16 20 N -0.29 -3.91 11.49 33.67 0.39 -3.52 16 21 C 0.06 0.95 5.58 -3.76 -0.02 0.93 16 22 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 25 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 26 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.21 6.00 -51.93 -0.31 0.90 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.85 6.79 -51.93 -0.35 1.50 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -33.07 301.00 -9.85 -42.92 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.87 Total: -2.71 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.59 Total: -4.14 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.91 Total: -57.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.07 -9.85 -42.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.899 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds