Wall clock time and date at job start Mon Mar 30 2020 18:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47289 * 270.00330 * 3 2 1 5 5 H 1.48507 * 109.46945 * 30.00625 * 3 2 1 6 6 H 1.48502 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 C 1.50697 * 109.46615 * 46.20263 * 14 13 12 16 16 C 1.39871 * 125.89878 * 95.00596 * 15 14 13 17 17 C 1.35313 * 107.92380 * 179.97438 * 16 15 14 18 18 N 1.34949 * 107.74415 * 359.97438 * 17 16 15 19 19 H 0.97000 * 126.04083 * 180.02562 * 18 17 16 20 20 N 1.30836 * 125.90080 * 274.68904 * 15 14 13 21 21 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 22 22 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 23 23 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 25 25 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 26 26 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 27 27 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 28 28 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 29 29 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 30 30 H 1.08997 * 109.47258 * 166.20113 * 14 13 12 31 31 H 1.09001 * 109.46957 * 286.20350 * 14 13 12 32 32 H 1.08000 * 126.03869 * 359.97002 * 16 15 14 33 33 H 1.08001 * 126.13052 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.48908 * 180.71202 * 21 13 12 35 35 H 1.09002 * 109.49369 * 60.64073 * 21 13 12 36 36 H 1.08997 * 109.49355 * 296.78047 * 22 10 9 37 37 H 1.09003 * 109.49032 * 56.82589 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 6 3.5858 -8.4251 -0.4600 16 6 3.0019 -9.4067 -1.2675 17 6 2.4916 -10.3629 -0.4574 18 7 2.7441 -9.9996 0.8175 19 1 2.4937 -10.4957 1.6126 20 7 3.4362 -8.7820 0.7898 21 6 4.0043 -4.7809 -1.1842 22 6 2.9687 -3.6562 -1.2558 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8897 26 1 0.9734 -4.8433 1.1788 27 1 0.8254 -5.0915 -0.5780 28 1 3.2356 -5.8353 1.1420 29 1 2.0486 -6.9718 0.4571 30 1 4.6460 -7.3360 -1.9580 31 1 5.1087 -6.9403 -0.2854 32 1 2.9648 -9.4021 -2.3468 33 1 1.9747 -11.2567 -0.7743 34 1 4.5519 -4.8316 -2.1253 35 1 4.6998 -4.5834 -0.3685 36 1 2.2897 -3.8396 -2.0885 37 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595391163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:48 Heat of formation + Delta-G solvation = 67.237831 kcal Electronic energy + Delta-G solvation = -18254.240886 eV Core-core repulsion = 15453.313368 eV Total energy + Delta-G solvation = -2800.927518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.11399 -40.05398 -36.82450 -34.65772 -32.83349 -31.83259 -30.81397 -30.04368 -27.84430 -25.46490 -24.43836 -23.26636 -22.27162 -20.80409 -20.36453 -18.93806 -18.45854 -17.39195 -16.48828 -16.02763 -15.89665 -15.81200 -15.47357 -15.20516 -14.69144 -14.48042 -14.33138 -14.04453 -13.50834 -13.39494 -12.97709 -12.84258 -12.67366 -12.47167 -12.23161 -12.13108 -11.94657 -11.58313 -11.49545 -11.16894 -10.61801 -10.41871 -9.60046 -9.31763 -9.03530 -8.20219 -6.31099 0.99275 1.41925 1.43944 1.55639 1.80930 2.08846 2.41094 3.08188 3.12046 3.29169 3.71223 3.95706 4.01740 4.20083 4.28266 4.35698 4.47739 4.51880 4.61887 4.65645 4.82824 4.88390 4.93742 4.96125 5.02104 5.05984 5.16048 5.23368 5.27050 5.63892 5.69912 5.97760 6.01783 6.09571 6.34652 6.53478 6.60379 6.77194 6.84711 7.38813 8.91380 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.052337 B = 0.004238 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.868970 B = 6604.604337 C = 6858.144376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.545 5.545 11 C 0.058 3.942 12 C 0.084 3.916 13 N -0.537 5.537 14 C 0.134 3.866 15 C 0.066 3.934 16 C -0.278 4.278 17 C 0.071 3.929 18 N -0.473 5.473 19 H 0.450 0.550 20 N -0.331 5.331 21 C 0.069 3.931 22 C 0.068 3.932 23 H 0.265 0.735 24 H -0.039 1.039 25 H 0.000 1.000 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.045 0.955 32 H 0.161 0.839 33 H 0.219 0.781 34 H 0.107 0.893 35 H 0.037 0.963 36 H 0.019 0.981 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 -21.116 -3.025 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.271 5.271 11 C -0.071 4.071 12 C -0.045 4.045 13 N -0.263 5.263 14 C 0.006 3.994 15 C -0.099 4.099 16 C -0.308 4.308 17 C -0.077 4.077 18 N -0.183 5.183 19 H 0.296 0.704 20 N -0.157 5.157 21 C -0.059 4.059 22 C -0.060 4.060 23 H 0.074 0.926 24 H -0.021 1.021 25 H 0.018 0.982 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.178 0.822 33 H 0.236 0.764 34 H 0.125 0.875 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.474 -20.708 -1.823 22.091 hybrid contribution -0.564 0.558 -0.210 0.821 sum 6.909 -20.150 -2.034 21.398 Atomic orbital electron populations 1.70096 1.07871 1.27974 1.51728 1.25960 0.95754 1.03344 0.94652 0.85327 0.78485 0.77920 0.78545 1.19537 1.20768 1.18850 1.21443 0.93655 0.90873 1.50206 0.91709 1.19359 0.90123 0.89086 0.93217 1.62224 1.27250 1.02725 1.34854 1.22116 0.95654 0.89796 0.99523 1.21916 0.95201 0.97116 0.90230 1.62310 1.26221 1.03472 1.34281 1.20559 0.91849 0.84824 1.02200 1.22276 0.99409 0.97329 0.90933 1.21732 1.10410 0.96760 1.01871 1.23244 0.99518 1.01194 0.83773 1.46418 1.45294 1.17931 1.08649 0.70374 1.77298 1.18120 0.99176 1.21128 1.22174 0.94674 0.87073 1.01962 1.22010 0.95742 0.98641 0.89644 0.92644 1.02141 0.98180 0.91867 0.96154 0.95457 0.90371 0.86397 0.93688 0.82156 0.76414 0.87470 0.94461 0.96289 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.52 -30.67 8.47 25.60 0.22 -30.45 16 8 H 0.06 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 11.81 4.72 85.56 0.40 12.21 16 10 N -0.55 -25.68 4.70 -900.26 -4.23 -29.91 16 11 C 0.06 2.39 5.61 86.31 0.48 2.87 16 12 C 0.08 2.91 4.96 86.31 0.43 3.34 16 13 N -0.54 -16.47 4.85 -900.25 -4.37 -20.84 16 14 C 0.13 3.28 5.85 85.55 0.50 3.78 16 15 C 0.07 1.63 5.19 43.10 0.22 1.85 16 16 C -0.28 -5.34 10.74 21.99 0.24 -5.11 16 17 C 0.07 0.98 11.99 83.54 1.00 1.98 16 18 N -0.47 -8.15 7.36 -57.59 -0.42 -8.57 16 19 H 0.45 4.77 8.96 -213.33 -1.91 2.86 16 20 N -0.33 -8.58 11.49 -47.39 -0.54 -9.13 16 21 C 0.07 2.17 5.58 86.31 0.48 2.65 16 22 C 0.07 2.79 5.43 86.31 0.47 3.26 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 25 H 0.00 0.01 8.03 -2.39 -0.02 -0.01 16 26 H 0.06 2.62 8.07 -2.39 -0.02 2.60 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 2.63 6.00 -2.39 -0.01 2.62 16 30 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 32 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 33 H 0.22 0.90 8.06 -2.91 -0.02 0.87 16 34 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 3.20 6.79 -2.39 -0.02 3.19 16 Total: -1.00 -72.98 301.00 -3.20 -76.19 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -0.85 Total: 5.86 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 4.91 Total: -3.10 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -9.28 Total: -125.99 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.98 -3.20 -76.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.424 kcal (2) G-P(sol) polarization free energy of solvation -72.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds