Wall clock time and date at job start Mon Mar 30 2020 18:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48501 * 109.47065 * 239.99898 * 3 2 1 5 5 H 1.48491 * 109.47465 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46898 * 120.00258 * 3 2 1 7 7 C 1.37879 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99485 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46496 * 180.02562 * 9 7 2 11 11 C 1.46954 * 110.99752 * 169.99951 * 10 9 7 12 12 C 1.53056 * 109.36505 * 183.18536 * 11 10 9 13 13 N 1.46951 * 109.36472 * 301.60098 * 12 11 10 14 14 C 1.46902 * 110.99682 * 183.18701 * 13 12 11 15 15 C 1.50703 * 109.46870 * 169.99895 * 14 13 12 16 16 C 1.39875 * 126.04085 * 90.02443 * 15 14 13 17 17 N 1.30829 * 108.20298 * 179.73658 * 16 15 14 18 18 N 1.40087 * 108.20855 * 359.97438 * 17 16 15 19 19 H 0.96996 * 126.03795 * 179.97438 * 18 17 16 20 20 C 1.34946 * 107.92254 * 0.02562 * 18 17 16 21 21 C 1.46954 * 110.88177 * 59.31883 * 13 12 11 22 22 C 1.46958 * 110.99952 * 293.79571 * 10 9 7 23 23 H 0.96999 * 119.99827 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47205 * 60.00588 * 9 7 2 25 25 H 1.08995 * 109.47090 * 299.99344 * 9 7 2 26 26 H 1.08999 * 109.48942 * 63.21884 * 11 10 9 27 27 H 1.09005 * 109.49208 * 303.15163 * 11 10 9 28 28 H 1.08996 * 109.48968 * 181.62704 * 12 11 10 29 29 H 1.09004 * 109.48287 * 61.56815 * 12 11 10 30 30 H 1.08997 * 109.47529 * 50.00084 * 14 13 12 31 31 H 1.08999 * 109.47098 * 289.99307 * 14 13 12 32 32 H 1.08004 * 125.89555 * 359.71602 * 16 15 14 33 33 H 1.07999 * 126.12479 * 180.02562 * 20 18 17 34 34 H 1.08999 * 109.48942 * 60.64750 * 21 13 12 35 35 H 1.09006 * 109.48943 * 180.70989 * 21 13 12 36 36 H 1.08996 * 109.49179 * 296.78098 * 22 10 9 37 37 H 1.09000 * 109.48705 * 56.84828 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5208 -4.8940 0.2377 12 6 2.5562 -6.0188 0.3093 13 7 3.3192 -6.0593 -0.9460 14 6 4.2738 -7.1759 -0.9459 15 6 4.8578 -7.3375 -2.3258 16 6 6.0118 -6.7124 -2.8094 17 7 6.2017 -7.1032 -4.0434 18 7 5.1732 -7.9910 -4.3846 19 1 5.0633 -8.4355 -5.2397 20 6 4.3618 -8.1178 -3.3138 21 6 4.0040 -4.7811 -1.1842 22 6 2.9685 -3.6563 -1.2559 23 1 -0.4850 0.8401 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 0.8251 -5.0914 -0.5779 27 1 0.9732 -4.8434 1.1789 28 1 2.0483 -6.9718 0.4571 29 1 3.2354 -5.8353 1.1420 30 1 3.7598 -8.0934 -0.6592 31 1 5.0737 -6.9701 -0.2347 32 1 6.6379 -6.0256 -2.2591 33 1 3.4758 -8.7326 -3.2556 34 1 4.6996 -4.5836 -0.3686 35 1 4.5516 -4.8318 -2.1254 36 1 2.2894 -3.8397 -2.0885 37 1 3.4764 -2.7033 -1.4036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595391687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:23:53 Heat of formation + Delta-G solvation = 88.712714 kcal Electronic energy + Delta-G solvation = -18243.390264 eV Core-core repulsion = 15443.393967 eV Total energy + Delta-G solvation = -2799.996297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24420 -38.55605 -35.18198 -32.60371 -31.58169 -30.79744 -30.27778 -27.91888 -25.67963 -23.54749 -23.09210 -21.91892 -21.27083 -20.03882 -19.05116 -17.79933 -16.26993 -15.83232 -14.81138 -14.64712 -14.51120 -14.31162 -14.18313 -14.08956 -13.49018 -13.17469 -12.90634 -12.53675 -12.04600 -11.79738 -11.56591 -11.15476 -10.84031 -10.78249 -10.65639 -10.51364 -10.28610 -10.22740 -9.73363 -9.62756 -9.14962 -8.63144 -8.39548 -7.99407 -7.16447 -5.98942 -4.00180 1.83652 2.68164 2.83063 3.36262 3.39974 3.43084 4.35879 4.45842 4.69289 4.83737 5.02665 5.24997 5.34355 5.36701 5.45006 5.57027 5.65465 5.70683 5.85640 5.96002 5.99421 6.09140 6.17856 6.28631 6.49774 6.53940 6.67508 6.77407 7.16843 7.27113 7.35474 7.41213 7.46502 7.57358 7.84361 8.14349 8.26721 8.60722 9.07237 9.63868 11.11973 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.031662 B = 0.004686 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.117496 B = 5974.122858 C = 6504.341592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.131 3.869 15 C -0.224 4.224 16 C 0.059 3.941 17 N -0.300 5.300 18 N -0.482 5.482 19 H 0.437 0.563 20 C 0.074 3.926 21 C 0.060 3.940 22 C 0.068 3.932 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.829 -17.221 -4.395 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.072 4.072 12 C -0.067 4.067 13 N -0.262 5.262 14 C 0.002 3.998 15 C -0.236 4.236 16 C -0.129 4.129 17 N -0.122 5.122 18 N -0.190 5.190 19 H 0.280 0.720 20 C -0.074 4.074 21 C -0.068 4.068 22 C -0.061 4.061 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.197 0.803 33 H 0.192 0.808 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.406 -16.983 -5.393 19.702 hybrid contribution -0.326 0.688 0.253 0.802 sum 8.079 -16.295 -5.141 18.900 Atomic orbital electron populations 1.69952 1.06065 1.26820 1.51079 1.24985 0.94847 0.99264 0.95486 0.86570 0.79446 0.82811 0.78639 1.20281 1.21386 1.20183 1.21128 0.93418 0.89995 1.49994 0.91984 1.19694 0.90075 0.87358 0.96036 1.62284 1.28068 1.02718 1.33290 1.22057 0.94784 0.90087 1.00314 1.22147 0.96099 0.98408 0.90041 1.62210 1.25908 1.03429 1.34622 1.20263 0.93699 0.94657 0.91147 1.19993 0.99457 1.05536 0.98632 1.23843 0.97258 0.99419 0.92341 1.77311 1.09964 1.09107 1.15859 1.46277 1.21103 1.37835 1.13785 0.71963 1.22353 0.96564 1.00944 0.87567 1.22235 0.96012 0.88439 1.00129 1.21979 0.95473 0.97493 0.91110 0.92914 0.99145 0.95275 0.95285 0.91128 0.91297 0.94349 0.90640 0.94242 0.80295 0.80788 0.94511 0.91074 0.95579 0.89770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.41 8.47 -34.44 -0.29 -14.70 16 8 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 9 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 10 N -0.54 -11.90 4.70 -235.90 -1.11 -13.01 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.02 16 12 C 0.06 0.91 5.61 -3.77 -0.02 0.89 16 13 N -0.54 -7.86 4.70 -235.91 -1.11 -8.96 16 14 C 0.13 1.51 5.45 -4.97 -0.03 1.49 16 15 C -0.22 -2.57 4.96 -105.05 -0.52 -3.09 16 16 C 0.06 0.70 10.55 -17.37 -0.18 0.52 16 17 N -0.30 -3.80 12.70 30.63 0.39 -3.41 16 18 N -0.48 -4.70 7.36 30.44 0.22 -4.48 16 19 H 0.44 2.80 8.96 -182.61 -1.64 1.16 16 20 C 0.07 0.72 11.90 -17.22 -0.21 0.51 16 21 C 0.06 0.98 5.38 -3.77 -0.02 0.96 16 22 C 0.07 1.39 5.43 -3.76 -0.02 1.36 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 24 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 25 H 0.03 0.82 8.02 -51.93 -0.42 0.41 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 28 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 31 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.10 6.15 -51.93 -0.32 0.78 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.83 6.79 -51.93 -0.35 1.48 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -32.54 301.59 -9.65 -42.18 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.87 Total: -2.96 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.43 Total: -4.42 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.87 Total: -56.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.54 -9.65 -42.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595391687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.895 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds